mRNA_E-siliculosus-1a_F_contig1357.2133.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1357.2133.1
Unique NamemRNA_E-siliculosus-1a_F_contig1357.2133.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1357contigE-siliculosus-1a_F_contig1357:24864..25818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size303
Model size303
Exons2
Ec32 orthologEc-01_010500.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927871.1001143-CDS-E-siliculosus-1a_F_contig1357:24863..250471622927871.1001143-CDS-E-siliculosus-1a_F_contig1357:24863..25047Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1357 24864..25047 -
1696318717.2098472-CDS-E-siliculosus-1a_F_contig1357:24863..250471696318717.2098472-CDS-E-siliculosus-1a_F_contig1357:24863..25047Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1357 24864..25047 -
1622927871.1131375-CDS-E-siliculosus-1a_F_contig1357:25699..258181622927871.1131375-CDS-E-siliculosus-1a_F_contig1357:25699..25818Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1357 25700..25818 -
1696318717.2172678-CDS-E-siliculosus-1a_F_contig1357:25699..258181696318717.2172678-CDS-E-siliculosus-1a_F_contig1357:25699..25818Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1357 25700..25818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1357.2133.1prot_E-siliculosus-1a_F_contig1357.2133.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1357 24864..25818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1357.2133.1

>prot_E-siliculosus-1a_F_contig1357.2133.1 ID=prot_E-siliculosus-1a_F_contig1357.2133.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2133.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=101bp
MSKKGKVKMGLGDFLGKQAAGAAQPVKGHILPSGPDPNRDPDERRGPGGR
RYDDDDGPGARSDGADQWRRGPGGGGGGMDRGGGGGGYDHERGGVAPEEG
T
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mRNA from alignment at E-siliculosus-1a_F_contig1357:24864..25818-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1357.2133.1 ID=mRNA_E-siliculosus-1a_F_contig1357.2133.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2133.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=955bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1357:24864..25818- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGAAGAAAGGCAAAGTGAAGATGGGCCTCGGGGATTTCTTGGGTAA
ACAGGCCGCGGGAGCTGCGCAGCCCGTGAAGGGCCATATTCTGCCGTCAG
GACCCGACCCCAACAGAGAGTGAGTTTACAATCAGGCAGAGAGAAAGGAG
AAAAGCAGGTCGCTTGTTGCGACGACACGAAACCCCTCCCTGTGCTAGTG
AGCGTACCCGTTGCTTTTGGGCTTGCTTTGGCTGCCGCTGGATGCCTTTG
CAAGAGACGTTTGCTTTTTCAGAGCCCTGTGACCACACACCACACATCAT
CATCCATTTACGGGAGAGGGGGGAGTATGCATGCGTGTTCGAAAAAAGTT
CGAAAATATACACGCCCTCACACGCACCTGCCCGCGTCTTCAATAGAGTC
GGAGCATCAGCAGGCCACGTGCTACATATGCCAGTGATGCGCAACTTTTT
GTTTCCATGCGCAACGACGCATACTCCACCTTGGATGACGTGAGGATGTC
GGTATCATGTATACACGTCGGCACAACCGAACACTGGGATCAACGGCGCA
AAGAGAGGTACAACCCCAGCGGTACATATCCAGCAGGCTTTATCCCCCAC
TCACTGAAAAGACTTCAACCCATCCCCTTTGACGGCTGTGGTATTATCTG
GAACTAGTCTTTCGTTGAGTGTGGTATGTGTACTTCCTAGAAAGCTTGCT
CTCCAAGCACACTTGAAGCATATATAGTACTCGAGCAATTGACGTCGTTT
CCATTGATTTTTTTCGCACAGCCCTGACGAGCGCCGCGGCCCGGGAGGAA
GGCGTTACGACGACGACGACGGCCCCGGCGCGCGCTCCGATGGCGCCGAC
CAGTGGAGGCGCGGGCCCGGCGGCGGCGGCGGCGGCATGGACCGAGGCGG
CGGCGGCGGTGGTTACGACCACGAGCGGGGAGGGGTGGCCCCGGAAGAGG
GAACC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1357:24864..25818-

>mRNA_E-siliculosus-1a_F_contig1357.2133.1 ID=mRNA_E-siliculosus-1a_F_contig1357.2133.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2133.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1357:24864..25818- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGAAGAAAGGCAAAGTGAAGATGGGCCTCGGGGATTTCTTGGGTAA
ACAGGCCGCGGGAGCTGCGCAGCCCGTGAAGGGCCATATTCTGCCGTCAG
GACCCGACCCCAACAGAGAATGTCGAAGAAAGGCAAAGTGAAGATGGGCC
TCGGGGATTTCTTGGGTAAACAGGCCGCGGGAGCTGCGCAGCCCGTGAAG
GGCCATATTCTGCCGTCAGGACCCGACCCCAACAGAGACCCTGACGAGCG
CCGCGGCCCGGGAGGAAGGCGTTACGACGACGACGACGGCCCCGGCGCGC
GCTCCGATGGCGCCGACCAGTGGAGGCGCGGGCCCGGCGGCGGCGGCGGC
GGCATGGACCGAGGCGGCGGCGGCGGTGGTTACGACCACGAGCGGGGAGG
GGTGGCCCCGGAAGAGGGAACCCCCTGACGAGCGCCGCGGCCCGGGAGGA
AGGCGTTACGACGACGACGACGGCCCCGGCGCGCGCTCCGATGGCGCCGA
CCAGTGGAGGCGCGGGCCCGGCGGCGGCGGCGGCGGCATGGACCGAGGCG
GCGGCGGCGGTGGTTACGACCACGAGCGGGGAGGGGTGGCCCCGGAAGAG
GGAACC
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