mRNA_E-siliculosus-1a_F_contig1357.2132.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1357.2132.1
Unique NamemRNA_E-siliculosus-1a_F_contig1357.2132.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2132.1 vs. uniprot
Match: D7FM33_ECTSI (W2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM33_ECTSI)

HSP 1 Score: 709 bits (1831), Expect = 8.910e-247
Identity = 564/648 (87.04%), Postives = 567/648 (87.50%), Query Frame = 1 
Query:    1 MGGGGMMGGRDGGYDNPPASSEGRPRLQLQSRKAPPPLPPMGSKEDKAAAEXXXXXXXXXXXXAGPRANPFGAAQAVDTTQRDKEIEAKAEAARQTSLRRRDEAVRSSKPAEGXXXXXXXXXXXXXXXXXXXXPAXAATEDGTTETAADAEXXXXXXXXXXXXXXXXAGDGDGKPKAEPAKPVGRWAALRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDGRXXXXXRDGERPSFGRRNEGDSAGGXXXXXXXXXRGMEREPFQPPAPPAGNAFAKRFGSNFDRDSERSYPRPNAGGMGGXXXFDRRDDDXRGGGMGXXXXXXXXXXXXXXGSGGSXXXFXXXXXGGGRMXXXXGFDRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPGAGSPEARASPLARPSGGGGFKGGRDSSTSPTAASLSKMSIKEPKTEVAAXXXXXXXXXXXXXXXXXXXXXXXXX-PVEVARASAAEALASGKRGKDLKEFVLAQEKRTTAGALLAAALEGTASPGDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1941
            MGGGGMMGGRDGGYDNPPASSEGRPRLQLQSRKAPPPLPPMGSKEDKAAAEXXXXXXXXXXXXAGPRANPFGAAQAVDTTQ+DKEIEAK EAARQTS RRRDEAVRSSKPAEG         XXX        PA AA EDGTT+TAAD  XXXXXXXXXXXXXXX AG+ DGKPKAEPAKPVGRWAALRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDGR XXXXRDGERPSFGRRNEGDSAGG XXXXXXXX           APPAGNAFAKRFGSNFDRDSER YPRPNAGGMGG   FDRRDDD RG        XXXXXXXXXX SGGS XX XXXXX GGRM   X FDR XXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXX   RRPGAGSPEARASPLARPSGGGGFKGGRDSSTSPTAASLSKMSIKEPK EVAAXXXXXXXXXXXXXXXXXXXXX     PVEVARASAAEALASGKRGKDLKEFVLAQEKRTTAGALLAAALEGTASP DMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE
Sbjct:    1 MGGGGMMGGRDGGYDNPPASSEGRPRLQLQSRKAPPPLPPMGSKEDKAAAEXXXXXXXXXXXXAGPRANPFGAAQAVDTTQKDKEIEAKVEAARQTSFRRRDEAVRSSKPAEGGGEDGGATAXXXGAAGEDASPATAAMEDGTTKTAADXXXXXXXXXXXXXXXXXTAGEEDGKPKAEPAKPVGRWAALRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDGRGXXXXRDGERPSFGRRNEGDSAGGGXXXXXXXXXXXXXXXXXXXAPPAGNAFAKRFGSNFDRDSER-YPRPNAGGMGGGGGFDRRDDDRRG--------XXXXXXXXXXXSGGSGXXXXXXXXSGGRMGGRXXFDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRFSRDSHDDXXXXGAYRRPGAGSPEARASPLARPSGGGGFKGGRDSSTSPTAASLSKMSIKEPKKEVAAXXXXXXXXXXXXXXXXXXXXXEPKEDPVEVARASAAEALASGKRGKDLKEFVLAQEKRTTAGALLAAALEGTASPEDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 639
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2132.1 vs. uniprot
Match: G5ABF4_PHYSP (W2 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5ABF4_PHYSP)

HSP 1 Score: 86.3 bits (212), Expect = 4.840e-16
Identity = 51/155 (32.90%), Postives = 82/155 (52.90%), Query Frame = 1 
Query: 1492 EALASGKRGKDLKEF---VLAQEKRTTAGALLAAALEGT--ASPGDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1941
            + LASGK+G++L      + A+  R +   +  A  E T   +     W+    +G  L       D  ++QM  +YA+    ++  FPK     +++  FM +Y+ D+ EE  F E+K DVD    GRMKA++QT+ W  WLE+ EEE +E++E
Sbjct:    3 QVLASGKKGEELAAVAKDIFAKNGRPSGAVVFEAVTEATEDVAKASANWIALPAYGELLKLAMEDTDK-KEQMHALYALQVFLNKHDFPK----GLIEKCFMALYSLDIIEETGFFEYKYDVDGDVPGRMKAIIQTSNWLTWLETPEEESEEEDE 152
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2132.1 vs. uniprot
Match: W7TDG6_9STRA (Putative cleavage-induced protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDG6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.250e-15
Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 1 
Query: 1480 ASAAEAL-ASGKRGKDLKEFVLAQEKRTTA-GALLAAALEGTASPGD----MKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEE 1920
            A  A+AL ASG +GK+L  +  AQEK   A G+ +   + G+    +    + WM   ++G  L      KD+T Q+   +YAV       G+PK+GG  +++ +F G+Y  DL +E AF  W+DD D     + KAV+QTTPWF WLE+ +E
Sbjct:  134 ADVAKALVASGLKGKEL--WAAAQEKGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKR-RLAKDTTDQKEA-VYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDD-DREEGNKRKAVVQTTPWFQWLETADE 281
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2132.1 vs. uniprot
Match: A0A329T1N6_9STRA (W2 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1N6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.400e-15
Identity = 53/163 (32.52%), Postives = 87/163 (53.37%), Query Frame = 1 
Query: 1468 EVARASAAEALASGKRGKDLKEFV--LAQEKRTTAGALLAAALEGTA---SPGDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1941
            EV R +  + LASGK+G++L E    + ++     GA++   +   A   +     W+    +G  L       D  + QM  +YA+    ++  FPK     +++  FM +Y+ D+ +E  F E+K DVD  A GRMKA++QT+ W  WLE+ EEE +E++E
Sbjct:   66 EVDRETMKQVLASGKKGEELAEAAKEIFKKNGRPTGAVVFETVTNAAEDVAKSSANWIAMPAYGELLKFAMEDSDK-KDQMEALYALQIFLNKHDFPK----GLIEKCFMALYSLDIIDETGFFEYKYDVDGDAPGRMKAIIQTSTWLTWLETPEEESEEEDE 223
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2132.1 vs. uniprot
Match: A0A662XJK7_9STRA (W2 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJK7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.490e-15
Identity = 58/163 (35.58%), Postives = 89/163 (54.60%), Query Frame = 1 
Query: 1468 EVARASAAEALASGKRGKDLKEFV--LAQEKRTTAGALLAAALEGTA---SPGDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1941
            EV R +  + LASGK+G++L      L  +    +GA+L  ++   A   +     W+    +G  L       D  Q Q+  +YA+    +Q  FPK     V++  FM +Y+ D+ E+ AF E+K DVDS + GRMKA++QT+ W  WLE+ EEE DE+E+
Sbjct:  282 EVDRETMKQVLASGKQGEELAAVAKDLFAKLGRPSGAVLFESVTNAAEDVAKASANWIAMPAYGELLKLGMESADK-QDQLHALYALQIFLNQHDFPK----GVMEKCFMALYSLDIIEDAAFFEYKYDVDSDSPGRMKAIIQTSSWLTWLETPEEESDEEED 439
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2132.1 vs. uniprot
Match: A0A662WJY7_9STRA (W2 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJY7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.400e-15
Identity = 57/163 (34.97%), Postives = 88/163 (53.99%), Query Frame = 1 
Query: 1468 EVARASAAEALASGKRGKDLKEFV--LAQEKRTTAGALLAAALEGTA---SPGDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1941
            EV R +  + LASGK+G++L      L  +    +GA+L   +   A   +     W+    +G  L       D  Q Q+  +YA+    ++  FPK     V++  FM +Y+ D+ E+ AF E+K DVDS + GRMKA++QT+ W  WLE+ EEE DE+E+
Sbjct:  163 EVDRETMKQVLASGKQGEELAAVAKDLFAKLGRPSGAVLFETVANAAEDVAKASANWIAMPAYGELLKFGMESADK-QDQLHALYALQIFLNKHDFPK----GVMEKCFMALYSLDIIEDAAFFEYKYDVDSDSPGRMKAIIQTSSWLTWLETPEEESDEEED 320
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2132.1 vs. uniprot
Match: A0A2P4X1N8_9STRA (W2 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A2P4X1N8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.540e-15
Identity = 54/163 (33.13%), Postives = 88/163 (53.99%), Query Frame = 1 
Query: 1468 EVARASAAEALASGKRGKDLKEFV--LAQEKRTTAGALLAAALEGTA---SPGDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1941
            +V R +  + LASGK+G++L +    + ++    +GA+L  A+   A   +     W+    +G  L       D  + QM  +YA+    ++  FPK     +++  FM +Y+ D+ +E  F E+K DVD    GRMKA++QT+ W  WLE+ EEE +EDEE
Sbjct:  248 DVDRETMKQVLASGKKGEELAQVAKDIFKKNGRPSGAVLFEAVTTAAEDVAKSSANWIAMPAYGELLKFAMEDSDK-KDQMEALYALQIFLNKYDFPK----GLIEKCFMALYSLDIIDETGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLETPEEESEEDEE 405
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2132.1 vs. uniprot
Match: W2R9I9_PHYPN (W2 domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2R9I9_PHYPN)

HSP 1 Score: 88.6 bits (218), Expect = 7.770e-15
Identity = 53/163 (32.52%), Postives = 88/163 (53.99%), Query Frame = 1 
Query: 1468 EVARASAAEALASGKRGKDLKEFV--LAQEKRTTAGALLAAALEGTA---SPGDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1941
            EV R +  + LASGK+G++L E    + ++    +GA++  A+   A   +     W+    +G  L       D  + QM  +YA+    ++  FPK     +++  FM +Y+ D+ +E  F E+K DVD    GRMKA++QT+ W  WLE+ EEE DE+++
Sbjct:  272 EVDRETMKKVLASGKKGEELAEVAKEIFKKNGRPSGAVVFEAVTAAAEDVAKSSANWIALPAYGELLKFAMEDSDK-KDQMEALYALQVFLNKYDFPK----GLIEKCFMALYSLDIIDETGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLETPEEESDEEDD 429
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2132.1 vs. uniprot
Match: A0A8K1FFV2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFV2_PYTOL)

HSP 1 Score: 88.6 bits (218), Expect = 1.000e-14
Identity = 56/160 (35.00%), Postives = 83/160 (51.88%), Query Frame = 1 
Query: 1477 RASAAEALASGKRGKDLKEF---VLAQEKRTTAGALLAAALEGTAS--PGDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1941
            RA  AE LASGK G+DL +    V A+  R +   +  A  +   S       W+   ++G  L       +    Q+  +YA+    +   FPK     V++  FM +Y  D+ +E AF E+K DVDS   GRMKA++QT+ W  WLE+ EEE +E++E
Sbjct:  313 RAIIAEVLASGKTGEDLAKVAKTVFAKSGRPSGAVIFEAVTKQAESVAKASANWIAPQQYGELLKFAMADAEK-DDQVKALYALQVFLNTHDFPK----GVMEKCFMALYTLDIIDEAAFFEYKYDVDSDVPGRMKAIVQTSNWLTWLETPEEESEEEDE 467
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2132.1 vs. uniprot
Match: A0A0P1B802_PLAHL (Hypothetical cleavage-induced protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B802_PLAHL)

HSP 1 Score: 87.8 bits (216), Expect = 1.220e-14
Identity = 54/154 (35.06%), Postives = 85/154 (55.19%), Query Frame = 1 
Query: 1498 LASGKRGKDLKEFV--LAQEKRTTAGALL----AAALEGTASPGDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE 1941
            LASGK+G++L +    + + K   +GA+L     AA E  A      W+    FG  L  +    D  + QMG +YA+    ++  FPK     +++  FM +Y+ D+ +E  F E+K DVD    GRMKA++QT+ W  WLE+ EEE D++++
Sbjct:  266 LASGKKGEELAQNAKEIFKSKGRPSGAVLFETVTAAAEDVAKS-SANWIAMPAFGELLKLVMVDSDK-KDQMGALYALQVFLNKYDFPK----GLLEKCFMALYSLDIIDEAGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLETPEEESDDEDK 413
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM33_ECTSI8.910e-24787.04W2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
G5ABF4_PHYSP4.840e-1632.90W2 domain-containing protein n=1 Tax=Phytophthora ... [more]
W7TDG6_9STRA1.250e-1537.91Putative cleavage-induced protein n=1 Tax=Nannochl... [more]
A0A329T1N6_9STRA1.400e-1532.52W2 domain-containing protein n=2 Tax=Phytophthora ... [more]
A0A662XJK7_9STRA1.490e-1535.58W2 domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A662WJY7_9STRA2.400e-1534.97W2 domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A2P4X1N8_9STRA3.540e-1533.13W2 domain-containing protein n=3 Tax=Phytophthora ... [more]
W2R9I9_PHYPN7.770e-1532.52W2 domain-containing protein n=9 Tax=Phytophthora ... [more]
A0A8K1FFV2_PYTOL1.000e-1435.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1B802_PLAHL1.220e-1435.06Hypothetical cleavage-induced protein n=1 Tax=Plas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1357contigE-siliculosus-1a_F_contig1357:21736..24719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1944
Model size2351
Exons2
Ec32 orthologEc-01_010490.1
Ec32 ortholog descriptionW2 domain
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG0401@1,KOG0401@2759
EggNOG free text desc.translation initiation factor activity
Preferred nameEIF4G3
Seed eggNOG ortholog2880.D7FM33
Seed ortholog evalue1.2e-205
Seed ortholog score723.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1357.2132.1prot_E-siliculosus-1a_F_contig1357.2132.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1357 22143..24719 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927871.4457955-UTR-E-siliculosus-1a_F_contig1357:21735..221421622927871.4457955-UTR-E-siliculosus-1a_F_contig1357:21735..22142Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1357 21736..22142 -
1696318717.3734632-UTR-E-siliculosus-1a_F_contig1357:21735..221421696318717.3734632-UTR-E-siliculosus-1a_F_contig1357:21735..22142Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1357 21736..22142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927871.4595397-CDS-E-siliculosus-1a_F_contig1357:22142..222531622927871.4595397-CDS-E-siliculosus-1a_F_contig1357:22142..22253Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1357 22143..22253 -
1696318717.382236-CDS-E-siliculosus-1a_F_contig1357:22142..222531696318717.382236-CDS-E-siliculosus-1a_F_contig1357:22142..22253Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1357 22143..22253 -
1622927871.4685228-CDS-E-siliculosus-1a_F_contig1357:22886..247191622927871.4685228-CDS-E-siliculosus-1a_F_contig1357:22886..24719Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1357 22887..24719 -
1696318717.393604-CDS-E-siliculosus-1a_F_contig1357:22886..247191696318717.393604-CDS-E-siliculosus-1a_F_contig1357:22886..24719Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1357 22887..24719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1357.2132.1

>prot_E-siliculosus-1a_F_contig1357.2132.1 ID=prot_E-siliculosus-1a_F_contig1357.2132.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2132.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=648bp
MGGGGMMGGRDGGYDNPPASSEGRPRLQLQSRKAPPPLPPMGSKEDKAAA
EAAAPAPAPAPKPAGPRANPFGAAQAVDTTQRDKEIEAKAEAARQTSLRR
RDEAVRSSKPAEGGGEDGGAADDDDGAAGEDASPAAAATEDGTTETAADA
EGDESEPAAAAPKEGDTAGDGDGKPKAEPAKPVGRWAALRREGGGDDRNA
APAAGGFPRRDRDDDRRGSGGGGFDGRGGGGGRDGERPSFGRRNEGDSAG
GGGGGGFGGGRGMEREPFQPPAPPAGNAFAKRFGSNFDRDSERSYPRPNA
GGMGGGGGFDRRDDDRRGGGMGGGGGGFDRRDDDRRGSGGSGGGFDRRDD
GGGRMGGRGGFDRPDDRRSGGMGGGGYDRRDEGRGGGMGMGSSRFSRDSH
DDGGGGGAYRRPGAGSPEARASPLARPSGGGGFKGGRDSSTSPTAASLSK
MSIKEPKTEVAAAAAPVEPEPEPEPVPEPEPEEPEEDPVEVARASAAEAL
ASGKRGKDLKEFVLAQEKRTTAGALLAAALEGTASPGDMKWMGKDEFGPA
LTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDD
LCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDEE*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1357:21736..24719-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1357.2132.1 ID=mRNA_E-siliculosus-1a_F_contig1357.2132.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2132.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2984bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1357:21736..24719- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCGGCGGCGGGATGATGGGGGGTAGGGACGGCGGTTACGACAACCC
CCCGGCGTCGAGCGAGGGCCGCCCGCGCCTGCAGCTGCAGAGCCGCAAGG
CGCCCCCGCCGTTGCCGCCGATGGGTTCCAAGGAAGACAAGGCGGCGGCG
GAGGCAGCGGCACCGGCACCGGCCCCCGCTCCCAAGCCGGCCGGGCCGAG
AGCAAACCCCTTCGGGGCGGCGCAAGCGGTAGACACCACCCAGAGGGACA
AGGAGATCGAGGCGAAGGCCGAGGCCGCGAGACAAACGTCCCTCCGCCGC
AGGGACGAGGCCGTTCGCTCAAGCAAGCCTGCGGAGGGAGGCGGCGAGGA
CGGGGGCGCGGCTGATGATGATGATGGCGCAGCGGGAGAAGATGCTTCTC
CCGCTGCTGCGGCGACGGAGGACGGCACAACCGAGACGGCGGCCGACGCT
GAGGGCGACGAGAGCGAGCCCGCCGCCGCCGCACCGAAGGAAGGCGACAC
GGCCGGGGACGGGGACGGCAAGCCGAAGGCGGAGCCGGCCAAGCCTGTCG
GACGATGGGCGGCTCTCCGAAGGGAGGGAGGGGGAGACGACAGAAACGCC
GCGCCGGCCGCGGGGGGTTTCCCAAGGAGGGATCGCGACGACGACCGCAG
AGGTAGCGGCGGCGGCGGGTTCGACGGCCGCGGCGGCGGTGGCGGACGCG
ACGGGGAACGGCCGTCTTTCGGGAGGAGAAACGAGGGCGACTCCGCCGGT
GGCGGCGGGGGTGGCGGGTTCGGCGGTGGCAGGGGCATGGAGCGAGAGCC
TTTCCAGCCCCCGGCGCCTCCCGCGGGCAACGCCTTCGCCAAGCGCTTCG
GCTCTAACTTCGACCGCGACTCGGAGCGATCGTACCCGCGTCCCAACGCC
GGAGGCATGGGTGGTGGTGGCGGGTTCGACCGCAGAGACGATGACCGACG
TGGTGGGGGAATGGGCGGCGGCGGCGGCGGATTCGACCGTCGAGATGATG
ACCGCCGCGGCAGCGGCGGGAGCGGGGGAGGCTTCGACCGGCGTGACGAC
GGCGGCGGCCGCATGGGGGGACGGGGGGGCTTCGACCGACCAGACGACCG
ACGTAGCGGGGGCATGGGCGGGGGCGGTTACGACCGTAGGGACGAAGGTC
GCGGGGGCGGCATGGGAATGGGCAGCTCTAGGTTCAGCAGGGACAGCCAC
GACGACGGTGGCGGAGGGGGCGCCTACCGTCGGCCGGGCGCCGGCTCCCC
CGAGGCGCGGGCGAGCCCCCTCGCCCGCCCGTCCGGTGGCGGCGGCTTCA
AAGGTGGTCGAGATTCGTCGACGTCGCCGACAGCGGCGTCCCTGTCCAAG
ATGTCAATCAAGGAGCCCAAGACGGAGGTAGCCGCCGCCGCGGCGCCGGT
GGAACCAGAACCCGAGCCCGAGCCGGTGCCGGAACCGGAACCGGAGGAGC
CGGAGGAAGACCCCGTCGAGGTCGCGCGCGCATCGGCGGCGGAGGCGTTG
GCGAGCGGGAAGCGCGGCAAGGACCTCAAGGAGTTCGTGCTGGCGCAAGA
GAAGCGGACGACCGCGGGCGCGCTGCTCGCCGCGGCCCTCGAGGGCACGG
CGTCCCCCGGGGACATGAAGTGGATGGGGAAGGACGAGTTCGGGCCGGCG
CTCACGGCGCTGTCGACGGGCAAGGACAGCACGCAGCAGCAGATGGGCAT
GATCTACGCGGTCGTGGCCAAGTGCCACCAGCTGGGGTTCCCAAAGATCG
GGGGCGCCGCGGTCGTTCAGACCATCTTCATGGGCATGTACAACGACGAC
CTCTGCGAGGAGGAGGCCTTCATCGAGTGGAAGGTAACGTCTTTTTTTTC
TATTCTTGCAACAAGTCATCTCTATTCATCCGCAGATAAAGAGTCCAGGA
TGAATGAGCATTTCAATGCAAGTCGTGTAATCAACGTATTTTAATTTCCT
GTATTCTGCTGTTCTGTTCTCTTCTTTGGTCTTGCGGAAGCCAGGAATAT
AGACCTTTTGTCACCAGAACGTGTAAATCGAGCGCGTTGACGAGGCGCAA
ACCTCGGATTGAGTAATTTCGCGCATGTCTGCTTTCGACACGCTCGAGTG
ATCCTTTCCGGAGTGCTGTGTTGCTGCAGCCTTGGCAATCCGTCGCGCCG
GTGATCTTTTTGACCACTCACGCACGACCTTTTTTTTGGAGGTTGAACCA
CTGCGGTGTTCGCTTTAAAGGGTTGTGCGAAACGGTGGTTGTGTCTGATT
GTGGTTTCGGCCCGTTCTTGCAGCAAGAGTACACGGCAAGCATGGTCCTG
AGATGCGTAGAATGCAAACGCTACCCAGCTCTGACCTCCGGGTTCAAGAA
CGGGAGTGCTTTCAATACACACAGCATTGAGCGTTTGTTCTGGTTCTCTC
ACGCCAACCAACGCTCCTCCTACTTTGTGTGTCTCGTTCCTGTGTCGTAT
TTCCTCGTTCTCGCAGGACGACGTGGACAGCACTGCCGAGGGTCGCATGA
AGGCCGTGATGCAGACCACGCCATGGTTCGTTTGGCTGGAGTCTGTGGAA
GAGGAGGAGGACGAAGACGAAGAATAATGAGCTTAAATCTCCAGTTTGCA
CCGGATTTTCGCGAGGCGTAACGCCTGCTTGGTCGACGAAATCTCGAAAG
TGCCCTTTGCCGGGAGTGAATTTTTGTGTGTGTGGAGTTTTTGGAAACCA
ACGTCGTCTTAGTCGTACGAATTGTCTCAAGTGATGGATGAGTGCAAACG
CCATTCAGTCGGGCTAATCTCCGAGATGCTTTTGTTTTGTTGTCGTGAGA
ACAGGGAAGACTTCGCGTGTGTACCAGTAATCTGAGACTGACTTAAGCAG
CTCCAATGACTGTGATTGCCGGGATTTCGGTCGAGTTTTGTTGTCTCCCT
CTCGGAGGTCGTGTTCTGGTGGTATCATGTTTGTTCATTGCTCGTCTTTC
GTAAGACGTATTTTCTTGTTTGGGGTGTCTTGGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1357:21736..24719-

>mRNA_E-siliculosus-1a_F_contig1357.2132.1 ID=mRNA_E-siliculosus-1a_F_contig1357.2132.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2132.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3888bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1357:21736..24719- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCGGCGGCGGGATGATGGGGGGTAGGGACGGCGGTTACGACAACCC
CCCGGCGTCGAGCGAGGGCCGCCCGCGCCTGCAGCTGCAGAGCCGCAAGG
CGCCCCCGCCGTTGCCGCCGATGGGTTCCAAGGAAGACAAGGCGGCGGCG
GAGGCAGCGGCACCGGCACCGGCCCCCGCTCCCAAGCCGGCCGGGCCGAG
AGCAAACCCCTTCGGGGCGGCGCAAGCGGTAGACACCACCCAGAGGGACA
AGGAGATCGAGGCGAAGGCCGAGGCCGCGAGACAAACGTCCCTCCGCCGC
AGGGACGAGGCCGTTCGCTCAAGCAAGCCTGCGGAGGGAGGCGGCGAGGA
CGGGGGCGCGGCTGATGATGATGATGGCGCAGCGGGAGAAGATGCTTCTC
CCGCTGCTGCGGCGACGGAGGACGGCACAACCGAGACGGCGGCCGACGCT
GAGGGCGACGAGAGCGAGCCCGCCGCCGCCGCACCGAAGGAAGGCGACAC
GGCCGGGGACGGGGACGGCAAGCCGAAGGCGGAGCCGGCCAAGCCTGTCG
GACGATGGGCGGCTCTCCGAAGGGAGGGAGGGGGAGACGACAGAAACGCC
GCGCCGGCCGCGGGGGGTTTCCCAAGGAGGGATCGCGACGACGACCGCAG
AGGTAGCGGCGGCGGCGGGTTCGACGGCCGCGGCGGCGGTGGCGGACGCG
ACGGGGAACGGCCGTCTTTCGGGAGGAGAAACGAGGGCGACTCCGCCGGT
GGCGGCGGGGGTGGCGGGTTCGGCGGTGGCAGGGGCATGGAGCGAGAGCC
TTTCCAGCCCCCGGCGCCTCCCGCGGGCAACGCCTTCGCCAAGCGCTTCG
GCTCTAACTTCGACCGCGACTCGGAGCGATCGTACCCGCGTCCCAACGCC
GGAGGCATGGGTGGTGGTGGCGGGTTCGACCGCAGAGACGATGACCGACG
TGGTGGGGGAATGGGCGGCGGCGGCGGCGGATTCGACCGTCGAGATGATG
ACCGCCGCGGCAGCGGCGGGAGCGGGGGAGGCTTCGACCGGCGTGACGAC
GGCGGCGGCCGCATGGGGGGACGGGGGGGCTTCGACCGACCAGACGACCG
ACGTAGCGGGGGCATGGGCGGGGGCGGTTACGACCGTAGGGACGAAGGTC
GCGGGGGCGGCATGGGAATGGGCAGCTCTAGGTTCAGCAGGGACAGCCAC
GACGACGGTGGCGGAGGGGGCGCCTACCGTCGGCCGGGCGCCGGCTCCCC
CGAGGCGCGGGCGAGCCCCCTCGCCCGCCCGTCCGGTGGCGGCGGCTTCA
AAGGTGGTCGAGATTCGTCGACGTCGCCGACAGCGGCGTCCCTGTCCAAG
ATGTCAATCAAGGAGCCCAAGACGGAGGTAGCCGCCGCCGCGGCGCCGGT
GGAACCAGAACCCGAGCCCGAGCCGGTGCCGGAACCGGAACCGGAGGAGC
CGGAGGAAGACCCCGTCGAGGTCGCGCGCGCATCGGCGGCGGAGGCGTTG
GCGAGCGGGAAGCGCGGCAAGGACCTCAAGGAGTTCGTGCTGGCGCAAGA
GAAGCGGACGACCGCGGGCGCGCTGCTCGCCGCGGCCCTCGAGGGCACGG
CGTCCCCCGGGGACATGAAGTGGATGGGGAAGGACGAGTTCGGGCCGGCG
CTCACGGCGCTGTCGACGGGCAAGGACAGCACGCAGCAGCAGATGGGCAT
GATCTACGCGGTCGTGGCCAAGTGCCACCAGCTGGGGTTCCCAAAGATCG
GGGGCGCCGCGGTCGTTCAGACCATCTTCATGGGCATGTACAACGACGAC
CTCTGCGAGGAGGAGGCCTTCATCGAGTGGAAGATGGGCGGCGGCGGGAT
GATGGGGGGTAGGGACGGCGGTTACGACAACCCCCCGGCGTCGAGCGAGG
GCCGCCCGCGCCTGCAGCTGCAGAGCCGCAAGGCGCCCCCGCCGTTGCCG
CCGATGGGTTCCAAGGAAGACAAGGCGGCGGCGGAGGCAGCGGCACCGGC
ACCGGCCCCCGCTCCCAAGCCGGCCGGGCCGAGAGCAAACCCCTTCGGGG
CGGCGCAAGCGGTAGACACCACCCAGAGGGACAAGGAGATCGAGGCGAAG
GCCGAGGCCGCGAGACAAACGTCCCTCCGCCGCAGGGACGAGGCCGTTCG
CTCAAGCAAGCCTGCGGAGGGAGGCGGCGAGGACGGGGGCGCGGCTGATG
ATGATGATGGCGCAGCGGGAGAAGATGCTTCTCCCGCTGCTGCGGCGACG
GAGGACGGCACAACCGAGACGGCGGCCGACGCTGAGGGCGACGAGAGCGA
GCCCGCCGCCGCCGCACCGAAGGAAGGCGACACGGCCGGGGACGGGGACG
GCAAGCCGAAGGCGGAGCCGGCCAAGCCTGTCGGACGATGGGCGGCTCTC
CGAAGGGAGGGAGGGGGAGACGACAGAAACGCCGCGCCGGCCGCGGGGGG
TTTCCCAAGGAGGGATCGCGACGACGACCGCAGAGGTAGCGGCGGCGGCG
GGTTCGACGGCCGCGGCGGCGGTGGCGGACGCGACGGGGAACGGCCGTCT
TTCGGGAGGAGAAACGAGGGCGACTCCGCCGGTGGCGGCGGGGGTGGCGG
GTTCGGCGGTGGCAGGGGCATGGAGCGAGAGCCTTTCCAGCCCCCGGCGC
CTCCCGCGGGCAACGCCTTCGCCAAGCGCTTCGGCTCTAACTTCGACCGC
GACTCGGAGCGATCGTACCCGCGTCCCAACGCCGGAGGCATGGGTGGTGG
TGGCGGGTTCGACCGCAGAGACGATGACCGACGTGGTGGGGGAATGGGCG
GCGGCGGCGGCGGATTCGACCGTCGAGATGATGACCGCCGCGGCAGCGGC
GGGAGCGGGGGAGGCTTCGACCGGCGTGACGACGGCGGCGGCCGCATGGG
GGGACGGGGGGGCTTCGACCGACCAGACGACCGACGTAGCGGGGGCATGG
GCGGGGGCGGTTACGACCGTAGGGACGAAGGTCGCGGGGGCGGCATGGGA
ATGGGCAGCTCTAGGTTCAGCAGGGACAGCCACGACGACGGTGGCGGAGG
GGGCGCCTACCGTCGGCCGGGCGCCGGCTCCCCCGAGGCGCGGGCGAGCC
CCCTCGCCCGCCCGTCCGGTGGCGGCGGCTTCAAAGGTGGTCGAGATTCG
TCGACGTCGCCGACAGCGGCGTCCCTGTCCAAGATGTCAATCAAGGAGCC
CAAGACGGAGGTAGCCGCCGCCGCGGCGCCGGTGGAACCAGAACCCGAGC
CCGAGCCGGTGCCGGAACCGGAACCGGAGGAGCCGGAGGAAGACCCCGTC
GAGGTCGCGCGCGCATCGGCGGCGGAGGCGTTGGCGAGCGGGAAGCGCGG
CAAGGACCTCAAGGAGTTCGTGCTGGCGCAAGAGAAGCGGACGACCGCGG
GCGCGCTGCTCGCCGCGGCCCTCGAGGGCACGGCGTCCCCCGGGGACATG
AAGTGGATGGGGAAGGACGAGTTCGGGCCGGCGCTCACGGCGCTGTCGAC
GGGCAAGGACAGCACGCAGCAGCAGATGGGCATGATCTACGCGGTCGTGG
CCAAGTGCCACCAGCTGGGGTTCCCAAAGATCGGGGGCGCCGCGGTCGTT
CAGACCATCTTCATGGGCATGTACAACGACGACCTCTGCGAGGAGGAGGC
CTTCATCGAGTGGAAGGACGACGTGGACAGCACTGCCGAGGGTCGCATGA
AGGCCGTGATGCAGACCACGCCATGGTTCGTTTGGCTGGAGTCTGTGGAA
GAGGAGGAGGACGAAGACGAAGAATAAGACGACGTGGACAGCACTGCCGA
GGGTCGCATGAAGGCCGTGATGCAGACCACGCCATGGTTCGTTTGGCTGG
AGTCTGTGGAAGAGGAGGAGGACGAAGACGAAGAATAA
back to top