mRNA_E-siliculosus-1a_F_contig1357.2129.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1357.2129.1
Unique NamemRNA_E-siliculosus-1a_F_contig1357.2129.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2129.1 vs. uniprot
Match: D7FM30_ECTSI (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM30_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 5.060e-73
Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 1
Query:   13 QVVLLDHGMYRRLEPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKVREGS 384
            QVVLLDHGMYRRL+PDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNK   G+
Sbjct:  353 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGT 476          
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2129.1 vs. uniprot
Match: A0A835ZCM7_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM7_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.080e-40
Identity = 84/159 (52.83%), Postives = 98/159 (61.64%), Query Frame = 1
Query:   13 QVVLLDHGMYRRLEPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILS-----------------------------------HDSLNAFLERLPRDMLFVMRTSDLVRSLNKVREGS 384
            QVVLLDHGMYRRLEPDFRL Y +LWKAF+TRDT LG++ AV LG+ P  YDALSL+LTWRP +T    G RITEEER  L  KYK ++S                                     ++N FLERLPRDMLFV+RTSDL+R LNK   G+
Sbjct:  379 QVVLLDHGMYRRLEPDFRLAYCRLWKAFLTRDTKLGKQQAVILGLTPDEYDALSLVLTWRPATTKTPMGTRITEEERARLREKYKGVVSAXXXXXXXXXXXXXXXXAQAEXXXXXXXXXXXXXXXXAVNNFLERLPRDMLFVLRTSDLIRGLNKDLGGT 537          
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2129.1 vs. uniprot
Match: A0A7S0IIF7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IIF7_9EUKA)

HSP 1 Score: 127 bits (318), Expect = 2.280e-32
Identity = 69/128 (53.91%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    1 GARAQVVLLDHGMYRRLEPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKVREGS 384
            G RAQ+VLLDHGMYRRL  +FR  Y +LW A + RD   G   A  LGVE   Y+ LSL+LT RP  +TA TG  ++  ERQA+ A+Y+   + + +N FL RLPRDMLFVMRT  LVRSLN+   G+
Sbjct:  213 GGRAQLVLLDHGMYRRLSANFRSEYCRLWMALLARDAREGRAAARALGVEADDYETLSLLLTHRPPDSTAPTGSNMSAAERQAVRARYRSYGAAE-VNTFLHRLPRDMLFVMRTWSLVRSLNRRLGGT 339          
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2129.1 vs. uniprot
Match: A0A0G4GUZ7_VITBC (ABC1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUZ7_VITBC)

HSP 1 Score: 125 bits (313), Expect = 9.240e-31
Identity = 62/123 (50.41%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    1 GARAQVVLLDHGMYRRLEPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPT-STTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLN 366
            G R Q+V+LDHGMYRRLEP FR  YS+LWKA + +D  +G +  VDL ++   +D LSLILT+RPT S   + GQR+ EE+R+ +  K+K   + +++N FL+ LPRD+L++ RT+++VRSLN
Sbjct:  367 GVRPQLVVLDHGMYRRLEPSFRHAYSRLWKALVMQDEHVGRQACVDLNLDEDAFDMLSLILTFRPTKSKFTKLGQRMHEEDRKVVKEKFKKTTA-EAINDFLKSLPRDILYIFRTTNIVRSLN 488          
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2129.1 vs. uniprot
Match: A0A7S2V1K6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1K6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.140e-30
Identity = 57/124 (45.97%), Postives = 84/124 (67.74%), Query Frame = 1
Query:   13 QVVLLDHGMYRRLEPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKVREGS 384
            Q+VLLDHGMYRRL+ +FR TY +LWKA + RD  L +     LG++   Y+ LSL  T+R  ++    GQR+T EER+AL  KY+   + + +N FL  +PRDML+V R+++L+RS+N+   G+
Sbjct:   32 QLVLLDHGMYRRLDSEFRTTYCELWKAMIIRDNHLAKASLAKLGMDAKYYEPLSLWFTYRTPTSKKGVGQRLTIEERRALRKKYEKGATREEVNVFLRSMPRDMLYVSRSNNLIRSINRQLGGT 155          
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2129.1 vs. uniprot
Match: A0A7S2UZ90_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ90_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.950e-29
Identity = 57/124 (45.97%), Postives = 84/124 (67.74%), Query Frame = 1
Query:   13 QVVLLDHGMYRRLEPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKVREGS 384
            Q+VLLDHGMYRRL+ +FR TY +LWKA + RD  L +     LG++   Y+ LSL  T+R  ++    GQR+T EER+AL  KY+   + + +N FL  +PRDML+V R+++L+RS+N+   G+
Sbjct:  127 QLVLLDHGMYRRLDSEFRTTYCELWKAMIIRDNHLAKASLAKLGMDAKYYEPLSLWFTYRTPTSKKGVGQRLTIEERRALRKKYEKGATREEVNVFLRSMPRDMLYVSRSNNLIRSINRQLGGT 250          
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2129.1 vs. uniprot
Match: A0A7S2RKL7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RKL7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.600e-28
Identity = 56/122 (45.90%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    1 GARAQVVLLDHGMYRRLEPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLN 366
            G   Q+V+LDHGMYRR EP+FR TY +LW++ +  D   G++ A+ LGV    YD LSLI T RP ++  + G+R+ + ER+ + A++K + + D +N FL+ LPRD+LFV+R +++VRS+N
Sbjct:  410 GEAYQLVILDHGMYRRFEPEFRTTYCQLWQSLLMADIKHGKQAAIKLGVPSDGYDVLSLIFTHRPANSQTKIGKRMQKAEREKMRAQFKDVSAAD-INVFLQNLPRDLLFVLRCTNIVRSIN 530          
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2129.1 vs. uniprot
Match: R1FRR0_EMIHU (Ubiquinone biosynthesis protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FRR0_EMIHU)

HSP 1 Score: 109 bits (272), Expect = 2.890e-25
Identity = 63/153 (41.18%), Postives = 85/153 (55.56%), Query Frame = 1
Query:   10 AQVVLLDHGMYRRLEPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVI----------------------------LSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKVREGS 384
            AQ+VLLDHG+YRRL  D+RL Y++LW A + +D A G   A  LGV P  Y+ L++ LT+RP  + A  G  ++  ER+A+  +Y  +                            L+   +NAFL RLPRDMLFVMRT  LVRSLN+   G+
Sbjct:  350 AQLVLLDHGLYRRLSEDYRLAYAQLWCALLAQDDAAGRAAASALGVPPDDYETLAIALTFRPPGSRAPLGSGMSATERRAIRERYASVGPAEADGMPRCASALSRLDLGSTSAQSRLNLGQVNAFLGRLPRDMLFVMRTWGLVRSLNRALGGT 502          
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2129.1 vs. uniprot
Match: K3W889_GLOUD (ABC1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W889_GLOUD)

HSP 1 Score: 106 bits (264), Expect = 2.840e-24
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    7 RAQVVLLDHGMYRRLEPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKVREGS 384
            + Q+VLLDHG+YR L+ DFR TY  LW+A + RDTAL E C+  L V       L L+ T+R  S+T      +TE E++ L    K  L   S+  FLE+LPRDMLFV RT++++RSLNK   GS
Sbjct:  326 KEQLVLLDHGLYRELDDDFRKTYCDLWRAMLLRDTALLEDCSKRLNVG-AFAKYLPLLFTYRTISSTTPLASSMTEGEKKELTEDLKK-LQFSSVTDFLEQLPRDMLFVFRTNNMIRSLNKDLGGS 449          
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2129.1 vs. uniprot
Match: A0A0G4FH32_9ALVE (ABC1 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FH32_9ALVE)

HSP 1 Score: 103 bits (258), Expect = 2.530e-23
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = 1
Query:   13 QVVLLDHGMYRRLEPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPT-STTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLN 366
            Q+VLLDHGMYRRL PDFR  Y +LW+A +T+D ++G   A+ LG++   ++ LSL+ T+R + S   R G R+ +E+RQ      +   + D +N FL  LPRD+L+V+R +++VRSLN
Sbjct:  397 QIVLLDHGMYRRLTPDFRKGYCQLWEALVTQDESVGREAAIRLGLDERGFELLSLVFTFRSSKSKRTRLGSRMHDEDRQRARDSIQGTTAGD-INEFLRGLPRDVLWVLRATNIVRSLN 514          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM30_ECTSI5.060e-7395.97ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZCM7_9STRA3.080e-4052.83ABC1 family-domain-containing protein n=1 Tax=Trib... [more]
A0A7S0IIF7_9EUKA2.280e-3253.91Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A0G4GUZ7_VITBC9.240e-3150.41ABC1 domain-containing protein n=2 Tax=Vitrella br... [more]
A0A7S2V1K6_9STRA4.140e-3045.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UZ90_9STRA2.950e-2945.97Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S2RKL7_9STRA1.600e-2845.90Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
R1FRR0_EMIHU2.890e-2541.18Ubiquinone biosynthesis protein n=1 Tax=Emiliania ... [more]
K3W889_GLOUD2.840e-2447.62ABC1 domain-containing protein n=1 Tax=Globisporan... [more]
A0A0G4FH32_9ALVE2.530e-2345.38ABC1 domain-containing protein n=1 Tax=Chromera ve... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1357contigE-siliculosus-1a_F_contig1357:55..877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size384
Model size384
Exons2
Ec32 orthologEc-01_010460.1
Ec32 ortholog descriptionUbiB domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01001
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.E
EggNOG OGsCOG0661@1,KOG1235@2759
EggNOG free text desc.regulation of tocopherol cyclase activity
KEGG koko:K08869
Seed eggNOG ortholog2880.D7FM30
Seed ortholog evalue4.8e-61
Seed ortholog score240.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927871.1465275-CDS-E-siliculosus-1a_F_contig1357:54..2661622927871.1465275-CDS-E-siliculosus-1a_F_contig1357:54..266Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1357 55..266 +
1696318717.228023-CDS-E-siliculosus-1a_F_contig1357:54..2661696318717.228023-CDS-E-siliculosus-1a_F_contig1357:54..266Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1357 55..266 +
1622927871.1572542-CDS-E-siliculosus-1a_F_contig1357:705..8771622927871.1572542-CDS-E-siliculosus-1a_F_contig1357:705..877Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1357 706..877 +
1696318717.2369814-CDS-E-siliculosus-1a_F_contig1357:705..8771696318717.2369814-CDS-E-siliculosus-1a_F_contig1357:705..877Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1357 706..877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1357.2129.1prot_E-siliculosus-1a_F_contig1357.2129.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1357 55..877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1357.2129.1

>prot_E-siliculosus-1a_F_contig1357.2129.1 ID=prot_E-siliculosus-1a_F_contig1357.2129.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=128bp
GARAQVVLLDHGMYRRLEPDFRLTYSKLWKAFMTRDTALGERCAVDLGVE
PGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAF
LERLPRDMLFVMRTSDLVRSLNKVREGS
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mRNA from alignment at E-siliculosus-1a_F_contig1357:55..877+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1357.2129.1 ID=mRNA_E-siliculosus-1a_F_contig1357.2129.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=823bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1357:55..877+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGCCCGAGCACAGGTAGTCCTCCTCGACCATGGCATGTACCGTCGCCT AGAGCCAGACTTCCGCCTGACGTACTCCAAGCTTTGGAAGGCGTTCATGA CGAGGGACACCGCGCTGGGGGAGCGCTGCGCCGTCGATCTCGGCGTGGAG CCCGGCCTCTACGACGCACTGTCGCTCATCCTGACATGGCGGCCTACGTC CACGACCGCGCGGTGAGTTGAGCGAGTGGCGGTGGAGCAGGCGGGAACGG GGTGAGACTTGCAGAGAGAAAGGCGTTTGTTAGAACGGGATGAGACTTGC ACTGAGAAAGACGTTGTTAGAACGGGATGAGACTCGCACTGGAGAAAGAC GTTGTTAGAACGGGATGAGATTTGCAGAGAGAAAGACGCTGTTAGAACGG GATGAGACTCGCGTTGAGAACGTTAGAGCGGGATGAGACTCGCACTGAGA AAGGCTTTGTTAGAGTGGGGAGGGGCGGTATCGACAATAGTTCGGTTACG GATCGCGTACAGTACGAGCCGCACCGGCAGAGTAGCGCTTGACGTCCCTC CCTCAGACGAAACATGGGTGATAAGAGTGTGCTTTCCACGAGCCGGACTA ACGCAAAATGTGGTCCGGTGTATCTGTGTGTGTGGTTCTCTCTGTCTGCA GAACCGGGCAACGAATAACGGAGGAGGAGCGACAGGCGCTGGTGGCCAAG TACAAGGTTATCTTGTCACACGATAGCCTCAACGCCTTCCTGGAGAGGCT CCCCAGAGATATGCTCTTCGTCATGCGCACCAGCGATCTTGTCCGGAGTC TGAACAAGGTGCGCGAGGGGTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1357:55..877+

>mRNA_E-siliculosus-1a_F_contig1357.2129.1 ID=mRNA_E-siliculosus-1a_F_contig1357.2129.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1357:55..877+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGCCCGAGCACAGGTAGTCCTCCTCGACCATGGCATGTACCGTCGCCT
AGAGCCAGACTTCCGCCTGACGTACTCCAAGCTTTGGAAGGCGTTCATGA
CGAGGGACACCGCGCTGGGGGAGCGCTGCGCCGTCGATCTCGGCGTGGAG
CCCGGCCTCTACGACGCACTGTCGCTCATCCTGACATGGCGGCCTACGTC
CACGACCGCGCGGGCGCCCGAGCACAGGTAGTCCTCCTCGACCATGGCAT
GTACCGTCGCCTAGAGCCAGACTTCCGCCTGACGTACTCCAAGCTTTGGA
AGGCGTTCATGACGAGGGACACCGCGCTGGGGGAGCGCTGCGCCGTCGAT
CTCGGCGTGGAGCCCGGCCTCTACGACGCACTGTCGCTCATCCTGACATG
GCGGCCTACGTCCACGACCGCGCGAACCGGGCAACGAATAACGGAGGAGG
AGCGACAGGCGCTGGTGGCCAAGTACAAGGTTATCTTGTCACACGATAGC
CTCAACGCCTTCCTGGAGAGGCTCCCCAGAGATATGCTCTTCGTCATGCG
CACCAGCGATCTTGTCCGGAGTCTGAACAAGGTGCGCGAGGGGTCGAACC
GGGCAACGAATAACGGAGGAGGAGCGACAGGCGCTGGTGGCCAAGTACAA
GGTTATCTTGTCACACGATAGCCTCAACGCCTTCCTGGAGAGGCTCCCCA
GAGATATGCTCTTCGTCATGCGCACCAGCGATCTTGTCCGGAGTCTGAAC
AAGGTGCGCGAGGGGTCG
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