mRNA_E-siliculosus-1a_F_contig13564.2128.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13564.2128.1
Unique NamemRNA_E-siliculosus-1a_F_contig13564.2128.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13564.2128.1 vs. uniprot
Match: D7FP60_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP60_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.770e-25
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 AFYTKFTERSFSDFDEAYSSVERWSRGEDLFTKKFVFIPVVKDIHWSLACFCNLDEIQVR 180
            AFY K + RSFSDFD AYSSV+RW  G ++FTKKFV +PVV+D+HWSL+C CNLD++Q R
Sbjct:    3 AFYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQTR 62
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BLAST of mRNA_E-siliculosus-1a_F_contig13564.2128.1 vs. uniprot
Match: D7FI86_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI86_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.850e-24
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 AFYTKFTERSFSDFDEAYSSVERWSRGEDLFTKKFVFIPVVKDIHWSLACFCNLDEIQ 174
            AFY K + RSFSDFD AYSSV+RW  G ++FTKKFV +PVV+D+HWSL+C CNLD++Q
Sbjct:    3 AFYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQ 60
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BLAST of mRNA_E-siliculosus-1a_F_contig13564.2128.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.060e-19
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    4 FYTKFTERSFSDFDEAYSSVERWSRGEDLFTKKFVFIPVVKDIHWSLACFCNLDEIQV 177
            F+TK TE    DFD AYS V+ W+R  DLF KKFV +PVV+D+HWSLAC CNLD+++V
Sbjct:  710 FFTKLTESEIYDFDAAYSKVQHWTRSVDLFKKKFVLVPVVEDLHWSLACLCNLDKLEV 767
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BLAST of mRNA_E-siliculosus-1a_F_contig13564.2128.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.100e-18
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    4 FYTKFTERSFSDFDEAYSSVERWSRGEDLFTKKFVFIPVVKDIHWSLACFCNLDEIQV 177
            F+TK TE    DFD AYS V+ W+R  DLF KKFV +PVV+D+HWSLAC CNLD+++V
Sbjct:  408 FFTKLTESKIYDFDAAYSKVQHWTRNVDLFKKKFVLVPVVEDMHWSLACLCNLDKLEV 465
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BLAST of mRNA_E-siliculosus-1a_F_contig13564.2128.1 vs. uniprot
Match: D7FWD8_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD8_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.470e-15
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 AFYTKFTERSFSDFDEAYSSVERWSRGEDLFTKKFVFIPVVKDIHWSLACFCNLDEIQVR 180
            +F+TK  E+   +F+ AY  V+RWSR  DLF+ KFV +PVV+D HW LAC CNL++++ +
Sbjct:  245 SFFTKLVEKDIDEFNAAYGGVKRWSRHVDLFSMKFVMVPVVEDEHWRLACLCNLNKLEAK 304
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BLAST of mRNA_E-siliculosus-1a_F_contig13564.2128.1 vs. uniprot
Match: A0A7S3ZZX5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZX5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.230e-9
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   49 AYSSVERWSRGEDLFTKKFVFIPVVKDIHWSLACFCNLDEIQVR 180
            A++ VERW+RG D+F KKF+ +PVV+D+HWSLA  C+  E+  R
Sbjct:  130 AHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKR 173
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BLAST of mRNA_E-siliculosus-1a_F_contig13564.2128.1 vs. uniprot
Match: A0A7S4A0P2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0P2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.270e-9
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   49 AYSSVERWSRGEDLFTKKFVFIPVVKDIHWSLACFCNLDEIQVR 180
            A++ VERW+RG D+F KKF+ +PVV+D+HWSLA  C+  E+  R
Sbjct:  162 AHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKR 205
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BLAST of mRNA_E-siliculosus-1a_F_contig13564.2128.1 vs. uniprot
Match: A0A7S3JWX9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWX9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.310e-9
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 FYTKFTERSFSD--FDEAYSSVERWSRGEDLFTKKFVFIPVVKDIHWSLACFCNLDEI 171
            F+TK TE   +   F EA+  VERW+R  D+F  KF+ +PVV+ +HWSLA  C+ D I
Sbjct:  157 FFTKLTEIKITTRTFQEAHKRVERWTRRLDIFKLKFIMVPVVQQLHWSLAVICHPDRI 214
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BLAST of mRNA_E-siliculosus-1a_F_contig13564.2128.1 vs. uniprot
Match: A0A8J2SX84_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX84_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.310e-9
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   49 AYSSVERWSRGEDLFTKKFVFIPVVKDIHWSLACFCNLDEIQVR 180
            A++ VERW+RG D+F KKF+ +PVV+D+HWSLA  C+  E+  R
Sbjct:  321 AHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKR 364
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13564.2128.1 vs. uniprot
Match: A0A7S3JWU2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWU2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.320e-9
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 FYTKFTERSFSD--FDEAYSSVERWSRGEDLFTKKFVFIPVVKDIHWSLACFCNLDEI 171
            F+TK TE   +   F EA+  VERW+R  D+F  KF+ +PVV+ +HWSLA  C+ D I
Sbjct:  357 FFTKLTEIKITTRTFQEAHKRVERWTRRLDIFKLKFIMVPVVQQLHWSLAVICHPDRI 414
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13564.2128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP60_ECTSI3.770e-2566.67SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
D7FI86_ECTSI3.850e-2467.24SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
A0A6H5KTD8_9PHAE8.060e-1962.07ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D8LDN6_ECTSI1.100e-1862.07ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FWD8_ECTSI3.470e-1550.00SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
A0A7S3ZZX5_9STRA1.230e-954.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A0P2_9STRA1.270e-954.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JWX9_9STRA1.310e-948.28Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2SX84_9STRA1.310e-954.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JWU2_9STRA1.320e-948.28Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13564contigE-siliculosus-1a_F_contig13564:257..872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size180
Model size180
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko01002,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC3.4.22.68
EggNOG OGsCOG5160@1,KOG0779@2759
EggNOG free text desc.protein modification by small protein removal
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
KEGG koko:K08596
Seed eggNOG ortholog2880.D8LDN6
Seed ortholog evalue5.4e-15
Seed ortholog score86.3
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927871.0509257-CDS-E-siliculosus-1a_F_contig13564:256..3011622927871.0509257-CDS-E-siliculosus-1a_F_contig13564:256..301Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13564 257..301 +
1696318717.1929731-CDS-E-siliculosus-1a_F_contig13564:256..3011696318717.1929731-CDS-E-siliculosus-1a_F_contig13564:256..301Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13564 257..301 +
1622927871.0632463-CDS-E-siliculosus-1a_F_contig13564:737..8721622927871.0632463-CDS-E-siliculosus-1a_F_contig13564:737..872Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13564 738..872 +
1696318717.2022948-CDS-E-siliculosus-1a_F_contig13564:737..8721696318717.2022948-CDS-E-siliculosus-1a_F_contig13564:737..872Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13564 738..872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13564.2128.1prot_E-siliculosus-1a_F_contig13564.2128.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13564 257..872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13564.2128.1

>prot_E-siliculosus-1a_F_contig13564.2128.1 ID=prot_E-siliculosus-1a_F_contig13564.2128.1|Name=mRNA_E-siliculosus-1a_F_contig13564.2128.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=60bp
AFYTKFTERSFSDFDEAYSSVERWSRGEDLFTKKFVFIPVVKDIHWSLAC
FCNLDEIQVR
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mRNA from alignment at E-siliculosus-1a_F_contig13564:257..872+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13564.2128.1 ID=mRNA_E-siliculosus-1a_F_contig13564.2128.1|Name=mRNA_E-siliculosus-1a_F_contig13564.2128.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=616bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13564:257..872+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTTTCTACACCAAGTTTACAGAGAGAAGCTTCTCCGATTTCGATGTGAG
CCCTTAGTGTGAAGCATTGCTGGGTTACTGGTTGTGGCGAACGCGATTGC
TCCTGGCCTTGAAAAGTGGCTTTGCCGACTCCTTTTGGAAGCATCGACGC
GATCCGTGCCTAGGGGAAAGACGTCCGTGTTGAAAGTTGAACTGAATACG
TTCATCTGTCACGGTGTTTGTCATTTACCATAAACCATCACGGCCCCATA
AATCGAGGGTTTTTTTACCACCTTGATGCGCCACTCCCCCCAATGCCACA
ACGCATGAGTAGCTAGGTGAAACTGTTCCTTCGACCCAGTCAAGGATGCA
TTCGTTTGTGGCACCCTTAATCCCCATACGGGGTGTCGCTGACCTCGGCA
ATGGACAGATTCCGAGCACCTCACTCCACTCTAACCGCATCACCAATTGT
TTACTGCGTACCCCCGAAACGCTATTTTCAGGAGGCGTACAGCAGTGTGG
AGCGCTGGTCCAGGGGAGAGGACCTCTTCACGAAGAAGTTCGTCTTCATA
CCGGTGGTGAAGGACATACACTGGAGCCTCGCATGCTTCTGCAACCTCGA
CGAAATCCAGGTACGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13564:257..872+

>mRNA_E-siliculosus-1a_F_contig13564.2128.1 ID=mRNA_E-siliculosus-1a_F_contig13564.2128.1|Name=mRNA_E-siliculosus-1a_F_contig13564.2128.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=360bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13564:257..872+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTTTCTACACCAAGTTTACAGAGAGAAGCTTCTCCGATTTCGATGCTTT
CTACACCAAGTTTACAGAGAGAAGCTTCTCCGATTTCGATGAGGCGTACA
GCAGTGTGGAGCGCTGGTCCAGGGGAGAGGACCTCTTCACGAAGAAGTTC
GTCTTCATACCGGTGGTGAAGGACATACACTGGAGCCTCGCATGCTTCTG
CAACCTCGACGAAATCCAGGTACGAGAGGCGTACAGCAGTGTGGAGCGCT
GGTCCAGGGGAGAGGACCTCTTCACGAAGAAGTTCGTCTTCATACCGGTG
GTGAAGGACATACACTGGAGCCTCGCATGCTTCTGCAACCTCGACGAAAT
CCAGGTACGA
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