mRNA_E-siliculosus-1a_F_contig13561.2126.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13561.2126.1
Unique NamemRNA_E-siliculosus-1a_F_contig13561.2126.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 2.080e-86
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 1
Query:    1 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF 438
            FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAA EARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIF++IYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF
Sbjct:   70 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAASEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFQDIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF 215          
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.810e-44
Identity = 87/146 (59.59%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    1 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF 438
            FE R F VTVV DG  PPAK  TS+ RR +R+ +A +AR L   GG   EINK AS AC FD RV A +AT LR +I GEVYIAP EADPQ+V+F++I+L TG  VYVYANDSDL VLGVR LL +V     G L G C+R RL+F
Sbjct:   31 FEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNARGELVGRCVRQRLLF 176          
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 3.160e-44
Identity = 87/146 (59.59%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    1 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF 438
            FE R F VTVV DG  PPAK  TS+ RR +RE +A +AR L   GG   E+NK AS AC FD RV A +AT LR +I GEVYIAP EADPQ+V+F++I+L TG  VYVYANDSDL VLGVR LL +V     G L G C+R RL+F
Sbjct:  276 FEDRNFLVTVVFDGQPPPAKGGTSQHRRERREKSAQQARALHAAGGCPMEVNKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGPNVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLF 421          
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.410e-42
Identity = 84/146 (57.53%), Postives = 100/146 (68.49%), Query Frame = 1
Query:    1 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF 438
            FE R F VTVV DG  PPAK  TS+ RR +R+ +A +AR L   GG   EINK AS AC FD RV A +AT LR +I GEVYIAP +ADPQ+V+F++I+L TG  VYVYANDSDL VLGVR  L +V     G L G  +R RL+F
Sbjct:    4 FEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGKADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDRLVEVVKNARGELVGRSVRQRLLF 149          
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Match: D7FZG7_ECTSI (Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG7_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 7.400e-36
Identity = 75/127 (59.06%), Postives = 88/127 (69.29%), Query Frame = 1
Query:    1 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYLETGCTVYVYANDSDLIVLGVRSLLWDV 381
            FE   F VTVV DG  PP K  TS+ RR +R+ +A +AR L   GG   EINK AS AC F+ RV A +AT  R  I GEVYIAP EADPQ+V+F++I+L TG  VYVYANDSDL VLGVR LL +V
Sbjct:   31 FEDHNFLVTVVFDGRPPPVKSGTSQHRRERRKKSAQQARALHDAGGCPVEINKLASAACAFNGRVTAEIATRSRALIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEV 157          
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Match: A0A6H5KRU2_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.410e-19
Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    7 SRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTE--INKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTG 411
            S G+ +TVV DG+ PP K +T+ +R ++RE    +   L+ +   L    + K A NA  F S +VARV+  +   +  E   AP EADPQ+ +   +Y   G  V V  NDSDL+V+GVRSLLW+V  ++ G L G
Sbjct:   74 SAGWGITVVFDGAPPPGKGATTRSRSSERERTRQQCLRLRESNVPLQHPGLQKAAVNAVAFTSHIVARVSRFVSRSLRCECITAPYEADPQLRVLEEMYTCMGKRVLVRGNDSDLMVIGVRSLLWEVV-SEEGRLFG 209          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE2.080e-8697.95Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G0K2_ECTSI1.810e-4459.59Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A6H5KVY6_9PHAE3.160e-4459.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G4G5_ECTSI1.410e-4257.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZG7_ECTSI7.400e-3659.06Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KRU2_9PHAE2.410e-1940.15Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13561contigE-siliculosus-1a_F_contig13561:845..1282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size438
Model size438
Exons1
Ec32 orthologEc-00_007660.1
Ec32 ortholog descriptionPIN domain-like
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGsCOG0258@1,KOG2518@2759
EggNOG free text desc.5'-3' exodeoxyribonuclease activity
KEGG Pathwayko03430,map03430
KEGG koko:K10746
Seed eggNOG ortholog2880.D7G0K2
Seed ortholog evalue1.7e-38
Seed ortholog score165.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927870.971554-CDS-E-siliculosus-1a_F_contig13561:844..12821622927870.971554-CDS-E-siliculosus-1a_F_contig13561:844..1282Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13561 845..1282 +
1696318717.1644766-CDS-E-siliculosus-1a_F_contig13561:844..12821696318717.1644766-CDS-E-siliculosus-1a_F_contig13561:844..1282Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13561 845..1282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13561.2126.1prot_E-siliculosus-1a_F_contig13561.2126.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13561 845..1282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13561.2126.1

>prot_E-siliculosus-1a_F_contig13561.2126.1 ID=prot_E-siliculosus-1a_F_contig13561.2126.1|Name=mRNA_E-siliculosus-1a_F_contig13561.2126.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=146bp
FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTE
INKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYL
ETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF
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mRNA from alignment at E-siliculosus-1a_F_contig13561:845..1282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13561.2126.1 ID=mRNA_E-siliculosus-1a_F_contig13561.2126.1|Name=mRNA_E-siliculosus-1a_F_contig13561.2126.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13561:845..1282+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTCGAGTCGCGTGGTTTCAAGGTCACCGTAGTCCTCGATGGAAGCACTCC GCCGGCGAAGAAGAGCACTTCCGAAGCTCGCAGAACTAAGCGGGAGGCTG CAGCCGGTGAGGCCCGCGAGCTCCAAAGAACTGGGGGCCGGCTTACGGAG ATCAACAAGAAGGCCAGCAATGCGTGCGTGTTCGACTCCCGCGTCGTCGC AAGGGTTGCGACGCTCTTGCGACCCCAGATAGCAGGAGAGGTTTACATCG CTCCGAGGGAGGCCGACCCACAGATCGTGATTTTCCGGAACATCTACCTA GAGACGGGGTGTACTGTGTATGTTTACGCGAACGATTCGGACTTGATCGT CCTCGGTGTTCGATCGTTGCTGTGGGACGTAAGAGGGACTGATGCGGGGA ATCTCACGGGGGTGTGCATCAGGTCGAGGTTGATATTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13561:845..1282+

>mRNA_E-siliculosus-1a_F_contig13561.2126.1 ID=mRNA_E-siliculosus-1a_F_contig13561.2126.1|Name=mRNA_E-siliculosus-1a_F_contig13561.2126.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13561:845..1282+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTCGAGTCGCGTGGTTTCAAGGTCACCGTAGTCCTCGATGGAAGCACTCC
GCCGGCGAAGAAGAGCACTTCCGAAGCTCGCAGAACTAAGCGGGAGGCTG
CAGCCGGTGAGGCCCGCGAGCTCCAAAGAACTGGGGGCCGGCTTACGGAG
ATCAACAAGAAGGCCAGCAATGCGTGCGTGTTCGACTCCCGCGTCGTCGC
AAGGGTTGCGACGCTCTTGCGACCCCAGATAGCAGGAGAGGTTTACATCG
CTCCGAGGGAGGCCGACCCACAGATCGTGATTTTCCGGAACATCTACCTA
GAGACGGGGTGTACTGTGTATGTTTACGCGAACGATTCGGACTTGATCGT
CCTCGGTGTTCGATCGTTGCTGTGGGACGTAAGAGGGACTGATGCGGGGA
ATCTCACGGGGGTGTGCATCAGGTCGAGGTTGATATTCTTCGAGTCGCGT
GGTTTCAAGGTCACCGTAGTCCTCGATGGAAGCACTCCGCCGGCGAAGAA
GAGCACTTCCGAAGCTCGCAGAACTAAGCGGGAGGCTGCAGCCGGTGAGG
CCCGCGAGCTCCAAAGAACTGGGGGCCGGCTTACGGAGATCAACAAGAAG
GCCAGCAATGCGTGCGTGTTCGACTCCCGCGTCGTCGCAAGGGTTGCGAC
GCTCTTGCGACCCCAGATAGCAGGAGAGGTTTACATCGCTCCGAGGGAGG
CCGACCCACAGATCGTGATTTTCCGGAACATCTACCTAGAGACGGGGTGT
ACTGTGTATGTTTACGCGAACGATTCGGACTTGATCGTCCTCGGTGTTCG
ATCGTTGCTGTGGGACGTAAGAGGGACTGATGCGGGGAATCTCACGGGGG
TGTGCATCAGGTCGAGGTTGATATTC
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