mRNA_E-siliculosus-1a_F_contig1356.2125.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1356.2125.1
Unique NamemRNA_E-siliculosus-1a_F_contig1356.2125.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1356.2125.1 vs. uniprot
Match: D7FXX0_ECTSI (CDAN1-interacting nuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX0_ECTSI)

HSP 1 Score: 541 bits (1395), Expect = 1.280e-188
Identity = 267/273 (97.80%), Postives = 271/273 (99.27%), Query Frame = 1 
Query:  265 MMKADYHRAVALCKASIDGGFDLTTSHTSAESLPYDAVQSLRRQMFSRHIRKVDWRCKQRTEEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGALEPGAAIAQLMRTPSLISDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWVVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEFDGYKKDIMVKADFPSPIMLPDGQVL 1083
            M+KADYHRAVALCKASIDGGFDLTTSHTS ESLPYDA+QSLRRQMFSRHIRKVDWRCKQRT+EFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGALEPGAAIAQLMRTPSLI DERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWV+VSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEFDGYKKDIMVKADFPSPIMLPDGQVL
Sbjct:    1 MLKADYHRAVALCKASIDGGFDLTTSHTSVESLPYDALQSLRRQMFSRHIRKVDWRCKQRTKEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGALEPGAAIAQLMRTPSLILDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWVIVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEFDGYKKDIMVKADFPSPIMLPDGQVL 273
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BLAST of mRNA_E-siliculosus-1a_F_contig1356.2125.1 vs. uniprot
Match: A0A7S2SDJ1_9STRA (CDAN1-interacting nuclease 1 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDJ1_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.710e-55
Identity = 116/268 (43.28%), Postives = 162/268 (60.45%), Query Frame = 1 
Query:  286 RAVALCKASIDGGFDLTTSHTSAESLPYDAVQSLRRQMFSRHIRKVDWRCKQRTEEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGAL--EPGAAIAQLMRTPSLISDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPR-NEWVVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEFDGYKKDIMVKADFPSPIMLPDGQV 1080
            R  A C+ SI  G  +      +  +  +A+ SLRRQ+ +R IR    R +  + E L +++KG  +I IA+    R+ P+L+AR +V  +    G  I  L+R P  I+D RLRREV+E    D D +P  D +R  +G EYEFVLQ++L A GV +++E DL+ +G  KTPD  L+ P+AV+ PR  EW  V WIDSKAMFGD  T+ +EH  QL SYV+R+GPGLV+YWFG+ E L  P  D    +I +  D P  ++LP G V
Sbjct:   11 RVRAACERSIQAGDPIDWRTLVSPDIDIEAILSLRRQIHTRWIRANTPRVRGASAEILRRWQKGEHVISIAK--AFRHPPFLLARGVVERVCHVTGKRIGDLVRHPERITDPRLRREVQEAAEADPDCAPRSDAIREVIGREYEFVLQRRLEALGVPYQTEEDLKTQGHSKTPDAWLRAPVAVQDPRVGEWRQVCWIDSKAMFGDVETFGKEHSMQLESYVHRFGPGLVVYWFGFDEEL--PRLD----NICISTDVPIQMVLPGGDV 270
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BLAST of mRNA_E-siliculosus-1a_F_contig1356.2125.1 vs. uniprot
Match: W7TNV0_9STRA (CDAN1-interacting nuclease 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNV0_9STRA)

HSP 1 Score: 172 bits (437), Expect = 8.650e-46
Identity = 104/253 (41.11%), Postives = 151/253 (59.68%), Query Frame = 1 
Query:  352 AESLPYDAVQSLRRQMFSRHIRKVDWRCKQRTEEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGAL---EPGAAIAQLMRTPSLISDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWVVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGY---VETLVSPEFDGYKKDIMVKADFPSPI---MLPDGQVL 1083
            ++ +  DA+ S+R Q   RH++ V    ++    +  QY  G  I +IAR+  L Y PYL+AR+LV  L        + +LMR P LI++ RLRREV  CI+ DRD+SP  DRV R +G +YE  LQ +LRA  + FE E+ LR +G  KTPD+ L  P+ V     +  VV+WIDSKA++G   T+  E   Q+  YVNR+GPG V++WFG+   V+ L+S +    +  ++V  DFP P+   +L +G VL
Sbjct:   12 SQDVSLDALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGQSIHEIARR--LCYPPYLLARMLVEVLCKVGTRTKVTELMRAPHLIANHRLRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQ----ECHVVVIDDFPPPVEKLVLLNGDVL 258
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BLAST of mRNA_E-siliculosus-1a_F_contig1356.2125.1 vs. uniprot
Match: A0A4D9D1V9_9STRA (CDAN1-interacting nuclease 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V9_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.020e-44
Identity = 107/269 (39.78%), Postives = 154/269 (57.25%), Query Frame = 1 
Query:  310 SIDGGFDLTTSHTSAES--LPYDAVQSLRRQMFSRHIRKVDWRCKQRTEEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGAL---EPGAAIAQLMRTPSLISDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWVVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGY---VETLVSPEFDGYKKDIMVKADFPSPI---MLPDGQVL 1083
            S +    L  +    ES  +  DA+ S+R Q   RH++ V    ++    +  QY  G  I +IAR+  + Y PYL+AR+LV  L   E    + +LMR P LI++ RLRREV  CI+ D D+SP  DRV R +G +YE  LQ +LRA  V FE E+ LR +G  KTPD+ L  P+ V     +  VV+WIDSKA++G   T+  E   Q+  YVNR+GPG V++WFG+   V+ L+S +    +  ++V  DFP P+   +  +G VL
Sbjct:   67 STEAAMSLPRAEEGPESQDVSLDALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGESIHEIARR--VCYPPYLLARMLVEVLCKVETRTKVTELMRAPHLIANHRLRREVMHCIAVDIDFSPGADRVSRSIGLDYERELQLRLRALAVPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSAQ----ECHVVVIDDFPPPVEKLVFLNGDVL 329
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BLAST of mRNA_E-siliculosus-1a_F_contig1356.2125.1 vs. uniprot
Match: A0A3P3YCX7_PLABS (CDAN1-interacting nuclease 1 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YCX7_PLABS)

HSP 1 Score: 158 bits (399), Expect = 2.140e-40
Identity = 93/235 (39.57%), Postives = 147/235 (62.55%), Query Frame = 1 
Query:  361 LPYDAVQSLRRQMFSRHIRKVDWRCKQRT--EEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVG---ALEPGAAIAQLMRTPSLISDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWVVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEFDGYKKDIMVKADFP 1050
            +PY+ + ++  Q +    R      K++T  + ++ +Y++G  +I IA+   L  +P L+ARI++    ++ P   I Q +R P+L+ DERLR ++  C+  D  YSP  +R+R  +G EYEFVL + L   GV F+SE DLR++G  KTPD+ L++P+AV+G      +V+WIDSKAMFGD  T + + Q+Q+  YV+RYGPG++I+WFGYV+ + S        DI++   FP
Sbjct:   35 VPYETLVAIYTQTYQLQTRMRMHVHKRQTNIDSYVQRYQEGEELISIAKSIDL--APCLLARIILRETLSMSP-KDITQCLREPALVDDERLRNQLVRCVESDEHYSPSSERIRSALGLEYEFVLYESLFNTGVPFDSEDDLRREGRPKTPDVRLRSPIAVRGR-----IVNWIDSKAMFGDVRT-LADCQNQVRGYVHRYGPGMIIFWFGYVQEVDSDP------DIILSHGFP 254
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BLAST of mRNA_E-siliculosus-1a_F_contig1356.2125.1 vs. uniprot
Match: A0A2V3IVI7_9FLOR (CDAN1-interacting nuclease 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVI7_9FLOR)

HSP 1 Score: 155 bits (392), Expect = 5.040e-39
Identity = 90/235 (38.30%), Postives = 143/235 (60.85%), Query Frame = 1 
Query:  292 VALCKASIDGGFDLTTSHTSAESLPYDAVQSLRRQMFSRHIRKVDWRCKQRTEEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGALEPGA---AIAQLMRTPSLISDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWVVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVE 987
            ++LC +S+    D++        L +D +  +  Q+++R + +  ++ K   + F+  ++ G  ++DIA    L  SP L+AR ++  L  G     I Q +R PS+I DERLR +V  CI  D   SP  DR+R  +G EYE  L+ +++  G  FE+E DLR +G +KTPD+LL+ P++    RN+  V+ WIDSKA FGD++T  Q++ S + SY+ R+GPG+VIYWFG++E
Sbjct:    7 LSLC-SSLRCKEDISRIAREQPHLSHDTIALIYEQLYTRQVARTFYQVKLHGKTFVKNFKNGQSLLDIAESFNL--SPVLVARKVM-ELHLGLNRKLITQALREPSMIGDERLRADVCLCIELDEHCSPRTDRLRHALGLEYELRLRDEVKNCGFEFETEDDLRNRGCHKTPDILLRVPISF---RNK--VIRWIDSKAKFGDKYTLNQDYTSSVSSYIGRFGPGMVIYWFGFIE 232
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BLAST of mRNA_E-siliculosus-1a_F_contig1356.2125.1 vs. uniprot
Match: A0A2P4XRT8_9STRA (CDAN1-interacting nuclease 1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRT8_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.540e-37
Identity = 97/258 (37.60%), Postives = 142/258 (55.04%), Query Frame = 1 
Query:  358 SLPYDAVQSLRRQMFSRHIRKVD--WRCKQRTEEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGA----------------LEPGAAIAQLMRTPSLISDE--RLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWV-VVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEFDGYKKDIMVKADFPSPIMLP 1068
            S+  +    ++RQ+  R  R      R ++  ++++ ++     +  IAR   + +SP +MAR+L+ A                ++  + I        L  DE  R+ RE+ ECI +D   SP  DR+R  +G EYE++L + LR R + FESE  LR+KG  KTPD+ L  P+ +K P +  + VV+WIDSKAMFGD HT+  E+ +QL  YVNRYGPG+VIYWFG+V  L S        DI++   FP  I LP
Sbjct:   23 SVSEETFNVIKRQLLHRQFRSALRLHRQEKTLKKYVARFDASETMCHIARS--VAFSPCMMARLLLDAKYGWSKTTISNFFKEAMKDESEIETDTNRRGLSEDEFGRVMREIRECIDEDVHCSPLADRIRHNLGLEYEYLLLETLRNRQLVFESEDMLREKGLSKTPDVRLLLPIGIKDPNSGQLHVVNWIDSKAMFGDRHTHETENANQLQGYVNRYGPGMVIYWFGHVARLSSDS------DILIADAFPREISLP 272
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BLAST of mRNA_E-siliculosus-1a_F_contig1356.2125.1 vs. uniprot
Match: A0A7S3XVT8_HETAK (CDAN1-interacting nuclease 1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVT8_HETAK)

HSP 1 Score: 148 bits (373), Expect = 2.730e-37
Identity = 76/178 (42.70%), Postives = 113/178 (63.48%), Query Frame = 1 
Query:  586 MRTPSLISDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPR----------NEWVVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEF---DGYKKDIMVKADFPSPIMLPDGQV 1080
            ++  +LI + RLR+EVE+CI  D D+SP +D+VR+ VG  YE  L ++L AR + F +E  LR +G  KTPD LL+ P+ ++             +EW  + WIDSKAMFGD  T+  +H++Q+  YVNR+GPGLV+YWFG   +LV+ E    DG  +D++V   FP  ++LP  ++
Sbjct:    3 VKDTNLIENLRLRQEVEDCIQGDPDFSPFVDKVRQRVGLAYEHRLARELAARSLPFAAEGALRGRGLAKTPDALLEIPVGIRKQTYQWEGAERVDSEWHTIYWIDSKAMFGDPETFKDDHRAQMEGYVNRFGPGLVVYWFGAAASLVAGEEGGEDGPGRDVLVWDRFPDEVLLPHREL 180
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BLAST of mRNA_E-siliculosus-1a_F_contig1356.2125.1 vs. uniprot
Match: A0A8K1FK04_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FK04_PYTOL)

HSP 1 Score: 152 bits (383), Expect = 2.800e-37
Identity = 78/152 (51.32%), Postives = 100/152 (65.79%), Query Frame = 1 
Query:  613 ERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWVVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEFDGYKKDIMVKADFPSPIMLP 1068
            +RL +E+ ECI  D   SP  DR+R  VG EYE++L  KL++RG+ FESE  LR+KG  KTPD+ L  P+ V+    E  VV WIDSKAMFGD HT+  E+ SQL  YVNRYGPG+VIYWFG+V  L S       +D+ +   FP+  +LP
Sbjct:  158 DRLWKEIGECIYADPYCSPLADRIRHNVGLEYEYILTAKLQSRGMVFESEDVLREKGLSKTPDVRLVLPIGVRDKEGELHVVHWIDSKAMFGDRHTHETENASQLQGYVNRYGPGMVIYWFGHVANLSSD------RDVFITDAFPTDFLLP 303
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1356.2125.1 vs. uniprot
Match: V9E9B0_PHYPR (CDAN1-interacting nuclease 1 n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=V9E9B0_PHYPR)

HSP 1 Score: 150 bits (378), Expect = 6.950e-37
Identity = 94/227 (41.41%), Postives = 129/227 (56.83%), Query Frame = 1 
Query:  448 EEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGALEPGA--AIAQLMRTP---------------SLISDE--RLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWV-VVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEFDGYKKDIMVKADFPSPIMLP 1068
            + ++ +Y  G  +  IA+   + +SP +MAR+++ A    +   I+ L +                  L  DE  R+ RE+ ECIS D   SP  DR+R  +G EYE++L + LR R + FESE  LR+KG  KTPD+ L  P+ VK  +   + VV+WIDSKAMFGD HT+  E+ SQL  YVNRYGPG+VIYWFG+V  L S        DI++   FP  I LP
Sbjct:   56 KNYVARYSAGESMRQIAKS--VSFSPCMMARVVLDAKYGWSKTTISNLFKEAMKDESELEADAPNHRGLSEDEYSRVVREIRECISKDEIGSPLADRIRHNMGVEYEYLLLETLRNRQLVFESEDMLREKGLSKTPDVRLLLPIGVKSSKTGKLHVVNWIDSKAMFGDRHTHETENASQLQGYVNRYGPGMVIYWFGHVAELSSDS------DILITDTFPQEISLP 274
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1356.2125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXX0_ECTSI1.280e-18897.80CDAN1-interacting nuclease 1 n=1 Tax=Ectocarpus si... [more]
A0A7S2SDJ1_9STRA1.710e-5543.28CDAN1-interacting nuclease 1 n=2 Tax=Rhizochromuli... [more]
W7TNV0_9STRA8.650e-4641.11CDAN1-interacting nuclease 1 n=1 Tax=Nannochlorops... [more]
A0A4D9D1V9_9STRA3.020e-4439.78CDAN1-interacting nuclease 1 n=1 Tax=Nannochlorops... [more]
A0A3P3YCX7_PLABS2.140e-4039.57CDAN1-interacting nuclease 1 n=1 Tax=Plasmodiophor... [more]
A0A2V3IVI7_9FLOR5.040e-3938.30CDAN1-interacting nuclease 1 n=1 Tax=Gracilariopsi... [more]
A0A2P4XRT8_9STRA2.540e-3737.60CDAN1-interacting nuclease 1 n=1 Tax=Phytophthora ... [more]
A0A7S3XVT8_HETAK2.730e-3742.70CDAN1-interacting nuclease 1 n=1 Tax=Heterosigma a... [more]
A0A8K1FK04_PYTOL2.800e-3751.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
V9E9B0_PHYPR6.950e-3741.41CDAN1-interacting nuclease 1 n=4 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1356contigE-siliculosus-1a_F_contig1356:20661..26245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size822
Model size1924
Exons8
Ec32 orthologEc-16_005150.1
Ec32 ortholog descriptionProtein of unknown function with TPD sequence-motif
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2R9SY@2759,arCOG04990@1
EggNOG free text desc.Protein of unknown function TPD sequence-motif
Preferred nameC15orf41
Seed eggNOG ortholog2880.D7FXX0
Seed ortholog evalue2.5e-152
Seed ortholog score544.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1356.2125.1prot_E-siliculosus-1a_F_contig1356.2125.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1356 21499..25456 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927870.7663507-UTR-E-siliculosus-1a_F_contig1356:20660..214981622927870.7663507-UTR-E-siliculosus-1a_F_contig1356:20660..21498Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1356 20661..21498 -
1696318717.0844638-UTR-E-siliculosus-1a_F_contig1356:20660..214981696318717.0844638-UTR-E-siliculosus-1a_F_contig1356:20660..21498Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1356 20661..21498 -
1622927870.9104543-UTR-E-siliculosus-1a_F_contig1356:25456..256031622927870.9104543-UTR-E-siliculosus-1a_F_contig1356:25456..25603Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1356 25457..25603 -
1696318717.1486492-UTR-E-siliculosus-1a_F_contig1356:25456..256031696318717.1486492-UTR-E-siliculosus-1a_F_contig1356:25456..25603Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1356 25457..25603 -
1622927870.9286284-UTR-E-siliculosus-1a_F_contig1356:26128..262451622927870.9286284-UTR-E-siliculosus-1a_F_contig1356:26128..26245Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1356 26129..26245 -
1696318717.1562033-UTR-E-siliculosus-1a_F_contig1356:26128..262451696318717.1562033-UTR-E-siliculosus-1a_F_contig1356:26128..26245Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1356 26129..26245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927870.7949932-CDS-E-siliculosus-1a_F_contig1356:21498..216401622927870.7949932-CDS-E-siliculosus-1a_F_contig1356:21498..21640Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 21499..21640 -
1696318717.096154-CDS-E-siliculosus-1a_F_contig1356:21498..216401696318717.096154-CDS-E-siliculosus-1a_F_contig1356:21498..21640Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 21499..21640 -
1622927870.8249874-CDS-E-siliculosus-1a_F_contig1356:22406..225041622927870.8249874-CDS-E-siliculosus-1a_F_contig1356:22406..22504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 22407..22504 -
1696318717.103798-CDS-E-siliculosus-1a_F_contig1356:22406..225041696318717.103798-CDS-E-siliculosus-1a_F_contig1356:22406..22504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 22407..22504 -
1622927870.838655-CDS-E-siliculosus-1a_F_contig1356:22857..229631622927870.838655-CDS-E-siliculosus-1a_F_contig1356:22857..22963Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 22858..22963 -
1696318717.111319-CDS-E-siliculosus-1a_F_contig1356:22857..229631696318717.111319-CDS-E-siliculosus-1a_F_contig1356:22857..22963Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 22858..22963 -
1622927870.8562398-CDS-E-siliculosus-1a_F_contig1356:23811..239861622927870.8562398-CDS-E-siliculosus-1a_F_contig1356:23811..23986Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 23812..23986 -
1696318717.1187444-CDS-E-siliculosus-1a_F_contig1356:23811..239861696318717.1187444-CDS-E-siliculosus-1a_F_contig1356:23811..23986Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 23812..23986 -
1622927870.8693264-CDS-E-siliculosus-1a_F_contig1356:24332..244391622927870.8693264-CDS-E-siliculosus-1a_F_contig1356:24332..24439Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 24333..24439 -
1696318717.1262665-CDS-E-siliculosus-1a_F_contig1356:24332..244391696318717.1262665-CDS-E-siliculosus-1a_F_contig1356:24332..24439Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 24333..24439 -
1622927870.8833268-CDS-E-siliculosus-1a_F_contig1356:24808..248591622927870.8833268-CDS-E-siliculosus-1a_F_contig1356:24808..24859Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 24809..24859 -
1696318717.1336412-CDS-E-siliculosus-1a_F_contig1356:24808..248591696318717.1336412-CDS-E-siliculosus-1a_F_contig1356:24808..24859Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 24809..24859 -
1622927870.8971834-CDS-E-siliculosus-1a_F_contig1356:25313..254561622927870.8971834-CDS-E-siliculosus-1a_F_contig1356:25313..25456Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 25314..25456 -
1696318717.1412761-CDS-E-siliculosus-1a_F_contig1356:25313..254561696318717.1412761-CDS-E-siliculosus-1a_F_contig1356:25313..25456Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1356 25314..25456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1356.2125.1

>prot_E-siliculosus-1a_F_contig1356.2125.1 ID=prot_E-siliculosus-1a_F_contig1356.2125.1|Name=mRNA_E-siliculosus-1a_F_contig1356.2125.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=274bp
MMKADYHRAVALCKASIDGGFDLTTSHTSAESLPYDAVQSLRRQMFSRHI
RKVDWRCKQRTEEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGALEP
GAAIAQLMRTPSLISDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEF
VLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWVVVSW
IDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEFDG
YKKDIMVKADFPSPIMLPDGQVL*
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mRNA from alignment at E-siliculosus-1a_F_contig1356:20661..26245-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1356.2125.1 ID=mRNA_E-siliculosus-1a_F_contig1356.2125.1|Name=mRNA_E-siliculosus-1a_F_contig1356.2125.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5585bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1356:20661..26245- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACGCACCACCGCTCGACAGCGGGGAGCTGTGGTTCCAAGAGAGAGACAA
GAGAGTAGAGAGTGAAGGAGTGGATATAGGATTGATCGACTTCCGTTTTC
GCCGGCCCTGTTCCACGGTGAGAAAAACCCATTGATTGAGCAATAATAGT
CGCTGTCGCCGCAGTACCCCGCATGACAGGTTGCCCCATAACGCTACCGC
GAATCGCGAAAGGTCAGAGTGTCAGACACGTTTCGACAGCAGTCACATCT
GGCATGGCCCGAACAGATTCTCGACGGCTCTGCGTTAGCAACCATCGCAG
CAGAGCTCGCTTCGTCGTGCAGACTTAAAAGCAAAGATCGCGACTGCCGA
ACAGCCGTATGGTTTTTTTCAAATCGGCGCATGAAGGCGCCTGATTGGTC
GGGAGTCCAGGGATACATACGCAGACCGACCGAATATTCCCAGAAGGGCT
CTTGAAGCGCAGCGAGACATAATATCGTTGCTTGTATGCACACCAAAGTA
CCTGTAGACCACAGCAGTGAGTGCTCAGCAAGTATGCTGCTGTTTCGTAA
GCGGAGAACATACAGGCGAATTGAAAGGACGACAAGATGCCAACGAATAC
ATCGCTCATCTGCACAACCTGCCCCCTGTCGTCTGTCTACAGTACGTTAT
GCACGTGCTCGTTCCACGACGGAAATCTGCTACAAATAGATCAGCAACCA
CAACGGCTGAGCGGCGAATCCCGCAGGAGGTTCGAGGTGTGTGGCAGGAC
GAGCACACACGTGGTTTTTAGTTTCGACGGAGAGGCAACATGATGAAGGC
CGACTACCACAGAGCCGTCGCGCTGTGCAAGGCCAGCATCGACGGCGGTT
TCGACCTCACAACATCGCACACCAGCGCGGAGAGCTTGCCCTACGATGCT
GTTCAGAGCCTTCGAAGACAAATGTTCTCCAGGTGACACCCTGACGTTCG
CACACTTCGTATATGTCACCCGATTTTCCACCCCGAGCTTCATGCACACT
CTCTCGAGAGGAGGGTTGGTACGGTAGACTGCATGATCGCTCACAACACT
CTGGGATGTTCAACAGGAAGCCTCTACCCGTTACGTTCAGTCTGCGGCGG
TTCAGTCCAGGGTGTCGCGTTGAAGTGGAGCACACACGTGCGCCTGACCC
TTTTCAACCCCGCCGTACGGTGAACAAGGTCGCGGGGTGGGAATTAGAGG
CGGATTTTGTCATCTCTTGTCCTCTCATCTCGGCATGTGTGGCTCTTTCC
CTATGGAAACAGCACTTTACCCATACTACCACGTACATACGTCTGTCCAC
GCGAACAGCCTGTAGTAGAACGAGCTTCGTGAGTGCCAAGTGTCGTTGCT
CGTGTGCTCCTTTGCTTTTTCGGTACCGCCTGGTAGGCACATCCGCAAGG
TGGATTGGCGATGCAAACAACGCACCGAGGAGTTTCTGTGAGTCAGTCCA
GTTTGAATTCGCGTCCCGCAAGGAGTCTAGGTGGTACAGTAACCTGAGGC
TGTTGCGTCTGTAGCGGGTACAGTAAGACAGCAGTAAGGCAGAAAGCACT
CTGATGCGGGTACCGTGGGTGTTCGCTGAGAGATGAGAAGCGAGACAACC
TAAACTGATTTTGATAGGTTGACCACCGACTATACGGCAAGTATCGTACC
TCGGTGACCATCGGAACAACTAGATGGCACATACTTCTATCTTTGTTACT
GGTTGACTCAAGGGCCAGGGTTTCATGGTGCGTCATGAAGGTGGCATGCA
TTTGCACGGGCACTTCAATACCACTCATGACGTCCATTCCCACCGACCGA
TGGCAGGACTCAATACCGGAAAGGTTCAAGGATCATCGATATCGCCAGAC
AACCAGGCCTGCGCTATTCCCCTTACTTGATGGCGAGAATCTTGGTCGGA
GCTCTTGAGCCAGGTATGCGGCAGACGTTCTGCCCTCCATCTCCCAGGCT
TCCCAACAGCATTGACTGTGTGTGAGGCAGACTTTCCAAGAAGCATCATT
AGGATTTGGTTTCGGTTCTGAAATCAAGACCACGGTATCTTGACGGCACG
GGCATTGCTGTCTCTGTACGGCGCAAGAAGTACACGGTGTTACGTGCCTG
ATGCGTACGGGGTCTTACATATCCGTTTTTCCGACAAGTGATTTTGCTGC
CATTCTCAAGGGCTGTGCTGATTCGAACCGATAGACATGGTGTCGAAGCT
GCGTTTTCTTTATTGCTCGGTGGCAAACCGTATTTCGTTCTTGTTCCCTC
TGCATGCAGGGGCTGCTATAGCACAGTTGATGCGGACGCCTTCTCTTATC
TCGGACGAGCGGTTACGACGCGAGGTGGAGGAGTGCATATCTGATGACAG
GGACTACTCGCCACATCTCGACAGAGTCAGGAGAGGCGTGGGAGCCGAGT
ACGAGTTCGTCTTGCAGCAGAAGCTGCGCGCCAGGTGACTTTCTGAAAAG
CCTATGCTCTTCCTCCCTTGTCATTGTTGACAACTCAGTTTCGCTCATAC
CTGTACCACCGGAGCCCGTTTCTCGCCTGGTATAGAGGCATACAGAATGT
CAACTTGCGGACACTTAACTGTCACGTAAGTAAATCGCGTCTGAGCTTGC
AAACCTCGTAAAACATCGCGGAAAGAAGAAATGGTTAGCGGTGAGTGGCA
GACAAAACTACACCTTCGCCGTTGGTCTCGGCCCCGCCGTCTCAATATTG
GTGTCGCCGGTGACACGTCGTGGTTTCGTGGTGCCAAAGGATTGTTTGTT
GGCTCAAAGAAGTTTCTGTCCTGCACTCTTGTTCCAAGTTGTTTGTCTCC
AACTACAAGTGTATGTTCGGGATGTTTTCTACGAGTGTGCATCGTCGGAA
GTGCTGGTGTTGCAAAGTATGCAAGGGAAGGGAGTCGGTTGTGCGTCATC
GTGTCCGAGGAGTGCTTGTGCGAGGGTAGTTGAGAAAGCGTTGCATGGAA
GCACGAAGCATCTATGTACAAGCCGAGTATTCGCTTGTCTTTGCAGTAGC
GGGAAGGCGTATCAAGTGAGAGCGAGGGCGATCCGGCGCTTTGTTTTATT
TTCCTTAACCCCACACATCCAGACACTTAGGGTTAGCTCTGTTTTTTTTC
ACTTCCAAATACAAGGGCAGTGCATGTACGCCTGTCTTCCCCCGCCCGGC
TCTTCTGCATAACGTCAACCTGTATATCGATGTTGAGGCCGTCTCGACAT
ACCCCGGGGTATCCAGAAACTGTTGTGTGTGTGTGTTGCGAAGCGCTAAA
ACAATCACCGACCGTACTGCGACTATGCACAGGGGAGTCGCCTTTGAGTC
GGAGTCCGATTTGAGACAGAAAGGCGCATACAAGACCCCGGACATGCTAC
TACAGACGCCGATGGCGGTCAAAGGGCCTAGAAATGAGGTGAGAGCTTGT
TTCGGATAAATATTAACCGGCACGCCTCAGTTCTCACTGCACCATTCATG
CCACCGCACGGATAGAGAGCATAAGGTGGAGCGGTATTACCAGCGCATCG
GCGGCCTCTCATTCCTTGACGTTACACGTGCACATGGTTGCTAATCTCAC
CGGCCGTGTCTGCCCTCCTTTTTCTACCGAAACCCCAAACGCAACACGAT
AAAATTGTTCTCAAGAGTGAAACAATCATGGGTGGTAACTTCTCGGTTCG
ATTGTTCTTGTCCTAACAGCATTCTGGTACAACGCATGCTCGTTCTTCGG
TGAATGACCCCCCCCACTCTTTTTTCGGCGTTTGGTCGCAGTGGGTGGTC
GTGTCTTGGATCGACAGCAAAGCCATGTTCGGGGATGAGCACACGTATGT
CCAGGAACACCAATCGCAGCTTCTCAGCTACGTCAACAGGTGCGCGAAAT
TCGGCGTCACCACAGCTCTACAACGGCTGCGGCCTCTATGTCTCGCTGTC
TAACGAGAGTCAAAATGCTTTGTTCTGTTTGCTTTTGCTTCCGCGGTCTG
CATACTAGTGCTGTGGCTGTGAGCGCCTGCGTTGTTTGCGTAGCTCGCAT
GCCCTGTTGCCTTCGCCACTGGGTGGGTGCGTCTAAGTCTATTCGCTCAC
AACCCCATTAACCTTGCCGGAAGTCATGCTTGCTTGCGGCCGGCGCCACA
TCGCCACGGGTGGAACAGGGTCTATCAGGGCTTCTCCCTTGTCCCTGACC
TACCCCCGCTGTCCTCTGCGCCAGTAGCTTCAAAAATTGTAGTCGTCGTA
GGTTCCCTCGAGGGTGAAGCTACTATCCGCACTTTACAGCTGGTTATTCC
CACTCTCTGCGGAAGCACAGCTTCGTTCAATGGTCAGCGTTGTGTACCTT
CCCCGTTGACAATATCACTCGACCACGTAAAGTAATGGTTGCATGACGGC
TCACAGCAGTGTCAGTAGGCAAGTCGTACAGCGAAATGGGTAGCTCCGAT
TCAACTGCCGCAGCGTTCGGCAAACCTCGCTTTACAACCAGGAGCAAAAA
TCAGGGTGCATGCTTTCGTCCGCAGCATCCATGGACCACACGACAACTAT
TTCCGAACGGTATCAACCAATCATGGATGGTCACACGAAGTGTTTTTCGT
ATCGCACGGTGCTGTGTGTGTGTGTGTGTGTGTGCACTTTGTTGTCTCGG
CAAAGGTACGGCCCTGGGCTGGTGATCTACTGGTTTGGCTATGTAGAGAC
CCTGGTATCTCCAGAGTTCGACGGCTACAAAAAAGACATCATGGTCAAGG
CGGACTTTCCCAGCCCGATCATGCTCCCTGACGGCCAAGTACTCTAGTGC
ATCTAGCGTGCCACATTTGAGGAGCGTTTCAACGAGCGGGGGCCTGGTTG
AATGCATGGTCTGACGGGGTTGTGTGTATGTAAGTCGTCATTTGGCTCTA
GTTTTCCGAAATTGTCAGGGGTAACTTTTTACTCCGTAGATGTAGGGTGT
TGAAAGGCGTTTCGTCCAGAATTGATTATTTTGTCGGTGGGGTGTGTACA
TATTGTCGTTGTAAGTTTAATAAAACGTTCTCGATGAGGTACGTGATGCC
CTAGACTGTCAGATTTGACCGGTTGAACAATTGACCGCGTGGACTGAATG
AGTGTGGGTGCTGGACAAGCTTCGTCCTTCGGTGCCTTGTCTGCTTGTTC
CTCTTTCATGTGACTGGGCGGTTGCTGGTGCCCTGCCTCATTCGACTTCG
TGCGTCCTCGCTCTTGGAGCAAGGGGGCGATCCATTCAAGAGGCCCATCG
TGTCAAAGCAAGGTCCGAAGCGCCGAATCCTTGTATACCATCCCCCACCC
TGTTTGCCACTAAAATTCGGTCTGGTGTTTATTGGCACGGCCATCTCTTA
CCGTGATGAGTTTTCGTTAGATTCTCAGTCTCGGATCGGCATTCTAGGGA
CAAGCATGGCTTGAACAGAGAGAGTCGAAGAGTTAAGAGTTGTCCGCTTT
CACGCGTTTCAAAATTTGATGGAAGGTAGATACCGCAGCAAAGCGAATAC
TTTCCGGCCGGTCGGGTTCTCTTCTCGAAACGAAATTCTTTGCGACAACA
GTGTCTTCTACGCAGTGCCGAACCCCCCCCCCCCGGCATGATGCGGTGGG
AGAAAAGGCGAGGACAACGGTCACGGGGCGCCGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1356:20661..26245-

>mRNA_E-siliculosus-1a_F_contig1356.2125.1 ID=mRNA_E-siliculosus-1a_F_contig1356.2125.1|Name=mRNA_E-siliculosus-1a_F_contig1356.2125.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1644bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1356:20661..26245- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGAAGGCCGACTACCACAGAGCCGTCGCGCTGTGCAAGGCCAGCAT
CGACGGCGGTTTCGACCTCACAACATCGCACACCAGCGCGGAGAGCTTGC
CCTACGATGCTGTTCAGAGCCTTCGAAGACAAATGTTCTCCAGATGATGA
AGGCCGACTACCACAGAGCCGTCGCGCTGTGCAAGGCCAGCATCGACGGC
GGTTTCGACCTCACAACATCGCACACCAGCGCGGAGAGCTTGCCCTACGA
TGCTGTTCAGAGCCTTCGAAGACAAATGTTCTCCAGGCACATCCGCAAGG
TGGATTGGCGATGCAAACAACGCACCGAGGAGTTTCTGCACATCCGCAAG
GTGGATTGGCGATGCAAACAACGCACCGAGGAGTTTCTGACTCAATACCG
GAAAGGTTCAAGGATCATCGATATCGCCAGACAACCAGGCCTGCGCTATT
CCCCTTACTTGATGGCGAGAATCTTGGTCGGAGCTCTTGAGCCAGGACTC
AATACCGGAAAGGTTCAAGGATCATCGATATCGCCAGACAACCAGGCCTG
CGCTATTCCCCTTACTTGATGGCGAGAATCTTGGTCGGAGCTCTTGAGCC
AGGGGCTGCTATAGCACAGTTGATGCGGACGCCTTCTCTTATCTCGGACG
AGCGGTTACGACGCGAGGTGGAGGAGTGCATATCTGATGACAGGGACTAC
TCGCCACATCTCGACAGAGTCAGGAGAGGCGTGGGAGCCGAGTACGAGTT
CGTCTTGCAGCAGAAGCTGCGCGCCAGGGGCTGCTATAGCACAGTTGATG
CGGACGCCTTCTCTTATCTCGGACGAGCGGTTACGACGCGAGGTGGAGGA
GTGCATATCTGATGACAGGGACTACTCGCCACATCTCGACAGAGTCAGGA
GAGGCGTGGGAGCCGAGTACGAGTTCGTCTTGCAGCAGAAGCTGCGCGCC
AGGGGAGTCGCCTTTGAGTCGGAGTCCGATTTGAGACAGAAAGGCGCATA
CAAGACCCCGGACATGCTACTACAGACGCCGATGGCGGTCAAAGGGCCTA
GAAATGAGGGGAGTCGCCTTTGAGTCGGAGTCCGATTTGAGACAGAAAGG
CGCATACAAGACCCCGGACATGCTACTACAGACGCCGATGGCGGTCAAAG
GGCCTAGAAATGAGTGGGTGGTCGTGTCTTGGATCGACAGCAAAGCCATG
TTCGGGGATGAGCACACGTATGTCCAGGAACACCAATCGCAGCTTCTCAG
CTACGTCAACAGTGGGTGGTCGTGTCTTGGATCGACAGCAAAGCCATGTT
CGGGGATGAGCACACGTATGTCCAGGAACACCAATCGCAGCTTCTCAGCT
ACGTCAACAGGTACGGCCCTGGGCTGGTGATCTACTGGTTTGGCTATGTA
GAGACCCTGGTATCTCCAGAGTTCGACGGCTACAAAAAAGACATCATGGT
CAAGGCGGACTTTCCCAGCCCGATCATGCTCCCTGACGGCCAAGTACTCT
AGGTACGGCCCTGGGCTGGTGATCTACTGGTTTGGCTATGTAGAGACCCT
GGTATCTCCAGAGTTCGACGGCTACAAAAAAGACATCATGGTCAAGGCGG
ACTTTCCCAGCCCGATCATGCTCCCTGACGGCCAAGTACTCTAG
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