mRNA_E-siliculosus-1a_F_contig1355.2120.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1355.2120.1
Unique NamemRNA_E-siliculosus-1a_F_contig1355.2120.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1355.2120.1 vs. uniprot
Match: A0A6H5JAC1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC1_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.400e-53
Identity = 107/126 (84.92%), Postives = 112/126 (88.89%), Query Frame = 1 
Query:  139 MNYPVPCTMGTVXXXXXXXXXXXXXXXMGGVGSIVPAGVPWV-PLVGQSTGTVAIVGDKCKEDKWSEYTDDNGKKYYHNPFKNKTTWEKPKDFDKKKKEGKPAPPADTEKKDKKKPKYIVKRGWLP 513
            MN PVPCTM TV  XXXXXXXXXXXXXMGGVGSIVPAG  WV P+VGQSTGTV IVGD+CKEDKWSEYTDDNGKKYYHNP K++TT EKPKDFDKK  EGKPAPPADTEKK+KKKPKYIV RGW P
Sbjct:    1 MNCPVPCTMETVPAXXXXXXXXXXXXXMGGVGSIVPAGGAWVVPVVGQSTGTVVIVGDECKEDKWSEYTDDNGKKYYHNPSKDETTREKPKDFDKK--EGKPAPPADTEKKEKKKPKYIVTRGWWP 124
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BLAST of mRNA_E-siliculosus-1a_F_contig1355.2120.1 vs. uniprot
Match: D7G840_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G840_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.120e-43
Identity = 98/126 (77.78%), Postives = 102/126 (80.95%), Query Frame = 1 
Query:  139 MNYPVPCTMGTVXXXXXXXXXXXXXXXMGGVGSIVPAG-VPWVPLVGQSTGTVAIVGDKCKEDKWSEYTDDNGKKYYHNPFKNKTTWEKPKDFDKKKKEGKPAPPADTEKKDKKKPKYIVKRGWLP 513
            MN PVPCTMGTVXXXXXXXXXXXXXXX+GGVGSIVPAG V W+P+ GQSTGTVAIVGDKCKEDKWSEYTDDNGKKYY NPFKN+TT EKPKDFDKKK                 KPKYIV RGWLP
Sbjct:    1 MNCPVPCTMGTVXXXXXXXXXXXXXXXVGGVGSIVPAGGVAWMPVFGQSTGTVAIVGDKCKEDKWSEYTDDNGKKYYDNPFKNETTREKPKDFDKKKXXXXXXXXXXXXXXXXXKPKYIVTRGWLP 126
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAC1_9PHAE1.400e-5384.92WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G840_ECTSI1.120e-4377.78WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1355contigE-siliculosus-1a_F_contig1355:30204..31073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size516
Model size516
Exons2
Ec32 orthologEc-12_001600.1
Ec32 ortholog descriptionWW domain
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.970628-CDS-E-siliculosus-1a_F_contig1355:30203..306571622927869.970628-CDS-E-siliculosus-1a_F_contig1355:30203..30657Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 30204..30657 -
1696318716.7374792-CDS-E-siliculosus-1a_F_contig1355:30203..306571696318716.7374792-CDS-E-siliculosus-1a_F_contig1355:30203..30657Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 30204..30657 -
1622927869.990711-CDS-E-siliculosus-1a_F_contig1355:31011..310731622927869.990711-CDS-E-siliculosus-1a_F_contig1355:31011..31073Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 31012..31073 -
1696318716.7470434-CDS-E-siliculosus-1a_F_contig1355:31011..310731696318716.7470434-CDS-E-siliculosus-1a_F_contig1355:31011..31073Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 31012..31073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1355.2120.1prot_E-siliculosus-1a_F_contig1355.2120.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1355 30204..31073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1355.2120.1

>prot_E-siliculosus-1a_F_contig1355.2120.1 ID=prot_E-siliculosus-1a_F_contig1355.2120.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2120.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=172bp
MTYFDATVWDLARDQRGRPCWADKHAGRVTYQLQDGNGIPLWPHGGMNYP
VPCTMGTVPAGMGIAPAGQGVPPMGGVGSIVPAGVPWVPLVGQSTGTVAI
VGDKCKEDKWSEYTDDNGKKYYHNPFKNKTTWEKPKDFDKKKKEGKPAPP
ADTEKKDKKKPKYIVKRGWLP*
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mRNA from alignment at E-siliculosus-1a_F_contig1355:30204..31073-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1355.2120.1 ID=mRNA_E-siliculosus-1a_F_contig1355.2120.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2120.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=870bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1355:30204..31073- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCTACTTCGACGCGACGGTATGGGATTTGGCCAGGGACCAGCGTGG
CCGGCCTTGCTGGTGAGTATACGCGCGCTCTTCCCTCCATCTCCCCCCGG
CTCATGCACCCATCCGCCGCAACGGCGTTGAGTGTGGCGATACTGACGAT
GTCCTTGAAGGTTGAAGGGCGAGCGGAATGGAGCTGGATACCACAAATTT
TGAGAATAGACCTGGACATGCGCAACTGCATGAAATCCCCTTTAGACACT
GTCTTTCCGTGTCAACTTCAAAAATGCAGCTGTCTGGGCGTGGTTTCATC
AAGTATAGCGTCGGCTGTACGGTTCGAAAAGCATATGGGTCACCACACCT
GGAGTGCTCCAAACCTTATCGCATCCACTCCTCCTTATCCCTGCCCGTCC
GCGTATTGTTGTGTAGGGCGGACAAGCACGCCGGGCGGGTTACGTACCAA
CTTCAAGATGGGAACGGCATTCCATTGTGGCCGCACGGCGGGATGAACTA
CCCGGTACCGTGCACCATGGGAACGGTACCTGCGGGGATGGGCATCGCAC
CTGCGGGGCAGGGCGTGCCTCCTATGGGAGGAGTGGGCAGCATCGTGCCT
GCTGGAGTGCCGTGGGTACCGTTGGTCGGCCAGTCCACAGGAACGGTCGC
GATTGTCGGCGACAAGTGCAAGGAGGACAAGTGGTCTGAGTACACCGACG
ACAACGGGAAGAAGTACTACCACAACCCCTTCAAGAACAAGACCACGTGG
GAGAAGCCCAAAGACTTCGACAAGAAGAAGAAGGAGGGAAAGCCCGCCCC
GCCCGCCGACACCGAGAAGAAGGACAAGAAGAAGCCTAAGTACATCGTGA
AGCGAGGTTGGTTGCCATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1355:30204..31073-

>mRNA_E-siliculosus-1a_F_contig1355.2120.1 ID=mRNA_E-siliculosus-1a_F_contig1355.2120.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2120.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1032bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1355:30204..31073- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCTACTTCGACGCGACGGTATGGGATTTGGCCAGGGACCAGCGTGG
CCGGCCTTGCTGATGACCTACTTCGACGCGACGGTATGGGATTTGGCCAG
GGACCAGCGTGGCCGGCCTTGCTGGGCGGACAAGCACGCCGGGCGGGTTA
CGTACCAACTTCAAGATGGGAACGGCATTCCATTGTGGCCGCACGGCGGG
ATGAACTACCCGGTACCGTGCACCATGGGAACGGTACCTGCGGGGATGGG
CATCGCACCTGCGGGGCAGGGCGTGCCTCCTATGGGAGGAGTGGGCAGCA
TCGTGCCTGCTGGAGTGCCGTGGGTACCGTTGGTCGGCCAGTCCACAGGA
ACGGTCGCGATTGTCGGCGACAAGTGCAAGGAGGACAAGTGGTCTGAGTA
CACCGACGACAACGGGAAGAAGTACTACCACAACCCCTTCAAGAACAAGA
CCACGTGGGAGAAGCCCAAAGACTTCGACAAGAAGAAGAAGGAGGGAAAG
CCCGCCCCGCCCGCCGACACCGAGAAGAAGGACAAGAAGAAGCCTAAGTA
CATCGTGAAGCGAGGTTGGTTGCCATGAGGCGGACAAGCACGCCGGGCGG
GTTACGTACCAACTTCAAGATGGGAACGGCATTCCATTGTGGCCGCACGG
CGGGATGAACTACCCGGTACCGTGCACCATGGGAACGGTACCTGCGGGGA
TGGGCATCGCACCTGCGGGGCAGGGCGTGCCTCCTATGGGAGGAGTGGGC
AGCATCGTGCCTGCTGGAGTGCCGTGGGTACCGTTGGTCGGCCAGTCCAC
AGGAACGGTCGCGATTGTCGGCGACAAGTGCAAGGAGGACAAGTGGTCTG
AGTACACCGACGACAACGGGAAGAAGTACTACCACAACCCCTTCAAGAAC
AAGACCACGTGGGAGAAGCCCAAAGACTTCGACAAGAAGAAGAAGGAGGG
AAAGCCCGCCCCGCCCGCCGACACCGAGAAGAAGGACAAGAAGAAGCCTA
AGTACATCGTGAAGCGAGGTTGGTTGCCATGA
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