|
|
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2119.1 vs. uniprot
Match: D7G838_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G838_ECTSI) HSP 1 Score: 280 bits (717), Expect = 7.090e-93 Identity = 134/140 (95.71%), Postives = 134/140 (95.71%), Query Frame = 1
Query: 253 MGLTISSRSPAMAYSEGGIWCSTFDEMGRRCWVNNVTGQRTYQFIRGRPVTPTQPAVASPYVVQQSPMPGPHTAPWGLPSPGYPAPPXXAAPMFPCQAGYGDGAPPVTPAGNGGLGQRLQKYYLRPSSERSWMWNRNQGQ 672
MGLTISSRSPAMAYSEGGIWCSTFDEMGRRCWVNNVTGQRTYQFIRGRPVTPTQPAVASPYVVQQSPMPGPHTAPWGLPSPGYPAPP A M PCQAGYGDGAPPV PAGNGGLGQRLQKYYLRPSSERSWMWNRNQGQ
Sbjct: 1 MGLTISSRSPAMAYSEGGIWCSTFDEMGRRCWVNNVTGQRTYQFIRGRPVTPTQPAVASPYVVQQSPMPGPHTAPWGLPSPGYPAPPPPAVAMVPCQAGYGDGAPPVAPAGNGGLGQRLQKYYLRPSSERSWMWNRNQGQ 140
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 423 |
| Model size | 918 |
| Exons | 3 |
| Ec32 ortholog | Ec-12_001610.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1355.2119.1 >prot_E-siliculosus-1a_F_contig1355.2119.1 ID=prot_E-siliculosus-1a_F_contig1355.2119.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2119.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=141bp
MGLTISSRSPAMAYSEGGIWCSTFDEMGRRCWVNNVTGQRTYQFIRGRPV
TPTQPAVASPYVVQQSPMPGPHTAPWGLPSPGYPAPPPPAAPMFPCQAGY
GDGAPPVTPAGNGGLGQRLQKYYLRPSSERSWMWNRNQGQ* back to topmRNA from alignment at E-siliculosus-1a_F_contig1355:22829..25382+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1355.2119.1 ID=mRNA_E-siliculosus-1a_F_contig1355.2119.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2119.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1355:22829..25382+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCACCATCCCCCCCTTGCACCTCATACCTCACATCCCACCCACGACCTCC
AACCTTCACCTCTCGTCTTTCTCTCTGTCTATCCGACGCTGGCAAGAGCC
CCTCACGCCTCTTGCATCTAACTTCGCCAAACATCAACAAGAAGAGTCCA
AGGTGCTCAGACAGAGTCTATATCTTTGTCCATCCGACATTCGACACACA
CGGCGCCGCTCAAACCTCAGATCAGCAAGCAACCAAGCAGAGTACCGCAA
GCATGGGCCTCACCATCAGCAGCAGGTAAGAGGTAGATCTAGAACTTGGA
ACGATGAACCCGCCTTTGGTTGTTTGGTGCTCATGCAGGGGGGCTCGGAC
AACAGCGCAGAGCAGTTTCTCTCTGGCAGCGTTTGTTTATTTTTTGGCAA
CTGGCAACTTCAACAAGATTACAATACAATATCGTGTGTTAGTTGTTGTC
CAATTCTGTCCGGAGAGGAGGGGGACAACCCCCCCGAACTATCCTCGGAC
AAGTGCAGCCCATTCGAGCTTGTACGCGCACTCCACACAGCGTATCAGAA
TGATGGATCGTGACTTGCGCGACTCGTGCCTACCCTTTTCTTGCTCGCCA
GGTATGGAAACTGGCTCTTTCCTTGTTGTATGGATGCATGATGCGTCACT
TGCTCAAATCCAAACTAGGCACGCCCCCAACCGTTAGGCGCTCGGGCCGA
TGCACTCCCCCCCCCCATGAGCCAAACACCTCTGTGTCCGCAACACACAG
CGTGTTGTATGGTAGAGGCGCTAGCCCGTACAGCCGCTTTGGTGACTGCC
TTTCGAACGGATAGATAGATGCTTTGATACGGAGGTCGACGAATCACGCA
CACCCGCGGGACTGAGCGACGTAACGTTCTTGCGGAACCCTGGGATAACC
GGTATCCGGTCTTTTCGTTGGTGCACCCACACCGATCCTCCGCACATTTA
TGTATACGCTGCACACGCTGACATGTACCGGTAGTACACGCGTCTCCGTC
GCACCCACATCGCCACCCGATCGTAGTAGAAAGAATCGGCCTTCGGCCTC
TGTCGCCTGGTGGCACCTGCCACACGGTACCTAGATAGAGTCAGTCGTTC
GCGATCCAAATTATAATTTTACTTGTAGCGTTTTGCACCCGTTTCCTCGT
CTCCTGCTCTTTTGCGCGTCTAAACAGGAGTCCGGCCATGGCATACTCAG
AAGGGGGGATCTGGTGCAGCACGTTCGACGAGATGGGACGACGCTGCTGG
TAAGAGGGCGACGTATCCTTGCGCCTGTTTTTTTTTTGTTTTCCTTCGCT
GTGCGCGGTCTCTCTCTCCGTAATGACTCTGGCCACTCTTTGGTAGGGTC
GTGGCCAACTTTCCGCAAAGGCCCGATCAGCAGCACCGTTTGCCCCTGCT
GGCTTCATGGGCGTTACTGCTTGTAAAACCTGAAGAAGATGACACACGCT
TGCGTTGAACGCTCTTTCCAGATAAAAATAAGATCGACATTCCTGGTGTT
GCCCCGCCCTGTGTAGGAGAGCGTGAGAAACTTGAAGCAATTTCATGTAT
ACTTGCTTGCCACGTCACATCCTCGGTACTTGGGAGGATCTGTGTTGGTT
TATGGACTACATGTAGTGCACCCCCGCTGATCGTGCGAAAATCGAGCGGG
GATTCCACGAAGACAACGCCTATCGCAACCGAGGGGGGTCTGTACACCTA
CTACCCACCTCAGAACCTGCGAGGACTTAGATATGCAGACGTTGAATGAA
GTCCTGACGGCCACGTTGAAGTTGGTCGTGTGTACTGTATAGCTAGATGT
GCAGGGTGATATTTGTTGATACTCGCGGTTGCGTTATTTTGTTATTTTCC
CCCAACCCCCGGAACTTCCTGCCCCCCCTCCTCTTCCTCCTCCCCAACAA
GTTAAACCGCCGCACCCTCCGGTTCCCCGACTCCCGCGTCGCGGGTCTCC
TATTATTATTCTTGTCCGACACGATGCAACCAGGGTTAACAACGTGACGG
GACAGAGGACCTACCAGTTTATCCGAGGGAGGCCCGTGACTCCCACTCAG
CCGGCGGTGGCGTCACCGTACGTCGTCCAGCAGAGTCCAATGCCGGGGCC
GCACACCGCGCCCTGGGGTCTACCGTCGCCGGGCTACCCTGCGCCTCCGC
CGCCCGCTGCCCCCATGTTCCCGTGCCAGGCGGGTTATGGTGACGGTGCC
CCCCCCGTCACTCCCGCGGGGAATGGGGGTCTGGGCCAGCGCCTGCAGAA
GTACTACCTGAGACCTTCGTCGGAACGTTCGTGGATGTGGAACCGCAATC
AGGGCCAATGATCGATGGACATCGCCGCCCGTACGCGCAGATGTGGGACA
AGTCACAGAGCCCGCGATCAATGTTGTACGGGGGGCATCATACACGGGAT
GTTGCCCGTTCCTTCTACAATCACCTAGGAGGTTTACTCCGGCTTGGGGG
CGGGGGTGGAATGTATGTACAGCAGTAGACGAGCACAAGGGCGCGAACAG
ACGGACTCTCCGGAAGAGCTCGGGACGGTAGCATTTAATTGTAAATAGTT
TTTT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1355:22829..25382+ >mRNA_E-siliculosus-1a_F_contig1355.2119.1 ID=mRNA_E-siliculosus-1a_F_contig1355.2119.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2119.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1355:22829..25382+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCCTCACCATCAGCAGCAGATGGGCCTCACCATCAGCAGCAGGAGT
CCGGCCATGGCATACTCAGAAGGGGGGATCTGGTGCAGCACGTTCGACGA
GATGGGACGACGCTGCTGGAGTCCGGCCATGGCATACTCAGAAGGGGGGA
TCTGGTGCAGCACGTTCGACGAGATGGGACGACGCTGCTGGGTTAACAAC
GTGACGGGACAGAGGACCTACCAGTTTATCCGAGGGAGGCCCGTGACTCC
CACTCAGCCGGCGGTGGCGTCACCGTACGTCGTCCAGCAGAGTCCAATGC
CGGGGCCGCACACCGCGCCCTGGGGTCTACCGTCGCCGGGCTACCCTGCG
CCTCCGCCGCCCGCTGCCCCCATGTTCCCGTGCCAGGCGGGTTATGGTGA
CGGTGCCCCCCCCGTCACTCCCGCGGGGAATGGGGGTCTGGGCCAGCGCC
TGCAGAAGTACTACCTGAGACCTTCGTCGGAACGTTCGTGGATGTGGAAC
CGCAATCAGGGCCAATGAGGTTAACAACGTGACGGGACAGAGGACCTACC
AGTTTATCCGAGGGAGGCCCGTGACTCCCACTCAGCCGGCGGTGGCGTCA
CCGTACGTCGTCCAGCAGAGTCCAATGCCGGGGCCGCACACCGCGCCCTG
GGGTCTACCGTCGCCGGGCTACCCTGCGCCTCCGCCGCCCGCTGCCCCCA
TGTTCCCGTGCCAGGCGGGTTATGGTGACGGTGCCCCCCCCGTCACTCCC
GCGGGGAATGGGGGTCTGGGCCAGCGCCTGCAGAAGTACTACCTGAGACC
TTCGTCGGAACGTTCGTGGATGTGGAACCGCAATCAGGGCCAATGA back to top
|