mRNA_E-siliculosus-1a_F_contig1355.2117.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1355.2117.1
Unique NamemRNA_E-siliculosus-1a_F_contig1355.2117.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1355.2117.1 vs. uniprot
Match: A0A6H5L7V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V5_9PHAE)

HSP 1 Score: 313 bits (803), Expect = 2.570e-105
Identity = 146/155 (94.19%), Postives = 151/155 (97.42%), Query Frame = 2 
Query:  266 FTPPKHLTHPSTHGPAISVGSTQTKSKINRQPRRNMSLNNGYMGPFYDEYGCYWVNYATGQRSYQMVGGSPHVSPMQAPMRAQQYGMSPPQLGYTPPFRAQGVAATPILPPLALGPSHAEATVPTRRWEELYDSRGNKYWVNTVTRQSTNIDPYM 730
            F PPKHLTHPSTHGPAISVGSTQTKSKINRQPRRNMSLNNGY+GP+YDEYGCYWVNYATG RSYQMVGGSPHVSPMQAPMR QQ+GMSPPQLGYTPPFRAQGVAATPILPPLALGPSHAEA VPTRRWEELYDSRGNKYWVNTVTRQ+TNIDPY+
Sbjct:    5 FPPPKHLTHPSTHGPAISVGSTQTKSKINRQPRRNMSLNNGYLGPYYDEYGCYWVNYATGHRSYQMVGGSPHVSPMQAPMRGQQFGMSPPQLGYTPPFRAQGVAATPILPPLALGPSHAEAAVPTRRWEELYDSRGNKYWVNTVTRQATNIDPYI 159
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BLAST of mRNA_E-siliculosus-1a_F_contig1355.2117.1 vs. uniprot
Match: D7G2J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J4_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 3.890e-79
Identity = 116/122 (95.08%), Postives = 120/122 (98.36%), Query Frame = 2 
Query:  365 RNMSLNNGYMGPFYDEYGCYWVNYATGQRSYQMVGGSPHVSPMQAPMRAQQYGMSPPQLGYTPPFRAQGVAATPILPPLALGPSHAEATVPTRRWEELYDSRGNKYWVNTVTRQSTNIDPYM 730
            RNMSLNNG++GP+YDE GCYWVNYATGQRSYQMVGGSPHVSPMQAPMRAQQYGMSPPQLGYTPPFRAQGVAATPILPPLALGPSHAEATVPTRR EELYDSRGNKYWVNTVTRQSTNIDPY+
Sbjct:    2 RNMSLNNGFLGPYYDENGCYWVNYATGQRSYQMVGGSPHVSPMQAPMRAQQYGMSPPQLGYTPPFRAQGVAATPILPPLALGPSHAEATVPTRRREELYDSRGNKYWVNTVTRQSTNIDPYI 123
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7V5_9PHAE2.570e-10594.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2J4_ECTSI3.890e-7995.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1355contigE-siliculosus-1a_F_contig1355:12553..14816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size363
Model size986
Exons3
Ec32 orthologEc-12_001740.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1355.2117.1prot_E-siliculosus-1a_F_contig1355.2117.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1355 12806..13718 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.6572394-UTR-E-siliculosus-1a_F_contig1355:12552..128051622927869.6572394-UTR-E-siliculosus-1a_F_contig1355:12552..12805Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1355 12553..12805 -
1696318716.5695155-UTR-E-siliculosus-1a_F_contig1355:12552..128051696318716.5695155-UTR-E-siliculosus-1a_F_contig1355:12552..12805Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1355 12553..12805 -
1622927869.7178814-UTR-E-siliculosus-1a_F_contig1355:13718..137221622927869.7178814-UTR-E-siliculosus-1a_F_contig1355:13718..13722Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1355 13719..13722 -
1696318716.6006408-UTR-E-siliculosus-1a_F_contig1355:13718..137221696318716.6006408-UTR-E-siliculosus-1a_F_contig1355:13718..13722Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1355 13719..13722 -
1622927869.7321913-UTR-E-siliculosus-1a_F_contig1355:14450..148161622927869.7321913-UTR-E-siliculosus-1a_F_contig1355:14450..14816Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1355 14451..14816 -
1696318716.6126986-UTR-E-siliculosus-1a_F_contig1355:14450..148161696318716.6126986-UTR-E-siliculosus-1a_F_contig1355:14450..14816Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1355 14451..14816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.6824107-CDS-E-siliculosus-1a_F_contig1355:12805..131121622927869.6824107-CDS-E-siliculosus-1a_F_contig1355:12805..13112Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 12806..13112 -
1696318716.5783768-CDS-E-siliculosus-1a_F_contig1355:12805..131121696318716.5783768-CDS-E-siliculosus-1a_F_contig1355:12805..13112Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 12806..13112 -
1622927869.7025335-CDS-E-siliculosus-1a_F_contig1355:13662..137181622927869.7025335-CDS-E-siliculosus-1a_F_contig1355:13662..13718Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 13663..13718 -
1696318716.5870948-CDS-E-siliculosus-1a_F_contig1355:13662..137181696318716.5870948-CDS-E-siliculosus-1a_F_contig1355:13662..13718Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 13663..13718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1355.2117.1

>prot_E-siliculosus-1a_F_contig1355.2117.1 ID=prot_E-siliculosus-1a_F_contig1355.2117.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2117.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=121bp
MSLNNGYMGPFYDEYGCYWVNYATGQRSYQMVGGSPHVSPMQAPMRAQQY
GMSPPQLGYTPPFRAQGVAATPILPPLALGPSHAEATVPTRRWEELYDSR
GNKYWVNTVTRQSTNIDPYM*
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mRNA from alignment at E-siliculosus-1a_F_contig1355:12553..14816-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1355.2117.1 ID=mRNA_E-siliculosus-1a_F_contig1355.2117.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2117.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2264bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1355:12553..14816- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACCGCCGCATGCAGCAGAGAGCAGGTGTGGGTGGGATCTCCGACAAGTC
TCCGCGCCGGTCGCTGCTCCGGACTGAAGAACGGCTCAAAGTTCTTGTGG
AGTCCACGGATACTTCTTGGCCGCTTCGCTTTTTCTAGTGTGGCGATGCT
TCTGCGGCGTTGCGGCGAACGACGACAGAGCCATTCCGGGGAACTCGATT
GTCTTGATGACACTTTTTGTTGAAACCGGCAGGCCGGATGCTCGCACTCC
GCATGCACACACCACTTTACCCCCCCCAAACATCTCACTCACCCTTCAAC
CCACGGGCCGGCGATCTCAGTCGGCAGCACCCAGACTAAATCCAAGATCA
ACAGACAACCTCGCAGGTGATGGATATGCGATGGGCGAGTGGATAGTTTA
GCGAAAGAGGCGGAGAGACGGTACACCCGCCTTATGTACTGTAGACCGAA
TCGGATATTCAAAGCTCGATTGCTCCACAACCAAGCTTGCTTAGACCGCC
TTTATGTCAACACACCAATGATGATGGTTTTGGAAACATCTCGTCGAGGG
CTTTCCGTAGACATATCGGGCTCTTTCCTTACCCTCTTGATCATAGGGGG
TGGTGCCATCGCTTCGCCGTTTACAATGATGTGCAAACAGCAATAAATTT
AGGCCGTAGGTTGTACACAATGCACCGTTTGGGTTTTATGTGCTGTTCCC
GAAGCTGATTCCCCCGAAGTTGATCTCTCGTCCTTAGCAGTGTCAGTGTT
GAGTGACTTACATTATTTCGCTGCTGGTAGACTTGATGTCGTTCACATCC
CAGATGGCGTCGCATTATAGGTGACCGACCCTCTCCACGCGGTCGCCGCA
CACGAAAGCTTCAGAGGAGACTTGAAGCGCTGCGGATCGATCGCTGTGTG
GTCTATTAAAAGTATGTAGCGCTGCACACACAACCGTTTTGTCGAAACAA
AGTCTACTATACTGACCGTTTGGCGAGAACCTTCCTCTGGGCGACGTCAC
GTTTGCGCATATAGATAGGTGTCACGCAAAGAGTAACCCAAGTTTAATCC
ATCCTCCTGCGTCCATTTCCCAAACTAACCGCCGCCTCGCGCAGAAACAT
GTCTCTGAACAACGGCTACATGGGGCCCTTCTACGACGAGTACGGATGCT
ACTGGTGAGAGCAAAATACAGGGATTGCTTTACTTGTTCAGTTTTCCTCC
AACTTCCCGCCGGGGTTGAGGCTCGCTCGCGGATTTGAAATGATATTGAC
AGAATTCAAACTAAAACATGGACGTGTTGCAGCAATTATGGAGCACTTTC
ACACGAACGGGTTATCATGCGCTCTTTGGGTCTGTTGGCGAGATGAGATA
GACCAACACGTACGTGTGCTGTACGCATGGAGCTAAATTTCAAAGCAGAA
CACAGTTCTTCGTCGGAGGTTGTCGCATCTTACTGTTATGCGTACCATGT
TGCTCGCAACGATCCTGAGAAGGTGCTTCGAGCCGCTTGGGAACGTTCTG
TTGACCGGAGCCTGTAGCATCGTGTCTTCTCAATGGACAGCATAAACATA
CTCAACCGAGGGATGGAACAGACATCGCCAATAGTGTACCAGACAGCCCG
GGAAATAGTCGGCATCGCCCCCATGTCTTCTGCCCGACGCTCTATTTCCA
ATGGTACCGCTACCGTCATTCGTTGCCGTCATTTTTCTGCATACATGCGC
CCAGGGTGAACTACGCTACCGGACAGCGTTCGTACCAGATGGTCGGGGGG
AGCCCTCACGTAAGCCCCATGCAAGCTCCGATGCGAGCCCAGCAGTACGG
CATGAGTCCTCCGCAGCTCGGCTACACCCCGCCGTTCCGTGCTCAAGGCG
TCGCCGCCACGCCCATCCTCCCTCCTCTCGCGCTGGGTCCCAGCCATGCG
GAGGCGACTGTGCCCACTCGTAGGTGGGAAGAACTCTACGACTCCCGGGG
CAACAAGTACTGGGTGAACACCGTCACTCGCCAGTCAACTAATATTGACC
CTTACATGTGATCCGTCTCGGAGCGGGGGGGTTGTCATCATAAGATGGCC
GGGTGCTGATCGCGCAACTCCGCATACTGTTGGCGGGGGCGGTTGGATGA
TGGTCGTGCGGCTTTCGTCCTACCAGGAGAAGGCATTGCTTTGTGCTATC
ATGTAAGGGGGCTCAAATACCCGCCGCATCGTCTCAACCTTGATGTGTGG
TAGCGAAAGGCTGTTGAACCAGTTAATTCCACCACGAACCCCTACCAAGG
ATATCGAAATTACA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1355:12553..14816-

>mRNA_E-siliculosus-1a_F_contig1355.2117.1 ID=mRNA_E-siliculosus-1a_F_contig1355.2117.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2117.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1355:12553..14816- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTCTGAACAACGGCTACATGGGGCCCTTCTACGACGAGTACGGATG
CTACTGATGTCTCTGAACAACGGCTACATGGGGCCCTTCTACGACGAGTA
CGGATGCTACTGGGTGAACTACGCTACCGGACAGCGTTCGTACCAGATGG
TCGGGGGGAGCCCTCACGTAAGCCCCATGCAAGCTCCGATGCGAGCCCAG
CAGTACGGCATGAGTCCTCCGCAGCTCGGCTACACCCCGCCGTTCCGTGC
TCAAGGCGTCGCCGCCACGCCCATCCTCCCTCCTCTCGCGCTGGGTCCCA
GCCATGCGGAGGCGACTGTGCCCACTCGTAGGTGGGAAGAACTCTACGAC
TCCCGGGGCAACAAGTACTGGGTGAACACCGTCACTCGCCAGTCAACTAA
TATTGACCCTTACATGTGAGGTGAACTACGCTACCGGACAGCGTTCGTAC
CAGATGGTCGGGGGGAGCCCTCACGTAAGCCCCATGCAAGCTCCGATGCG
AGCCCAGCAGTACGGCATGAGTCCTCCGCAGCTCGGCTACACCCCGCCGT
TCCGTGCTCAAGGCGTCGCCGCCACGCCCATCCTCCCTCCTCTCGCGCTG
GGTCCCAGCCATGCGGAGGCGACTGTGCCCACTCGTAGGTGGGAAGAACT
CTACGACTCCCGGGGCAACAAGTACTGGGTGAACACCGTCACTCGCCAGT
CAACTAATATTGACCCTTACATGTGA
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