mRNA_E-siliculosus-1a_F_contig13545.2114.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13545.2114.1
Unique NamemRNA_E-siliculosus-1a_F_contig13545.2114.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13545.2114.1 vs. uniprot
Match: A0A356SUV2_HALSX (ATP-dependent metalloprotease (Fragment) n=2 Tax=Halomonas sp. TaxID=1486246 RepID=A0A356SUV2_HALSX)

HSP 1 Score: 742 bits (1916), Expect = 3.760e-269
Identity = 377/413 (91.28%), Postives = 394/413 (95.40%), Query Frame = 1 
Query:    1 DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALMRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNESALFAARRNKRLVSMEELELAKDKIMMGAERKSMVMTDKEKLNTAYHESGHAIIGLVVPSHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQILGQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKMKSGDTTTRLDKEIRKIIDDCYEQARQILTDNRDKLDAMAEALMKYETIDANQLKDIMEGREPRPPEGWNDGDSSGGGTPVGDDKPQAKTDEDVPSGFSEDGSGSDGEDDDEPRRRPSDPLGGPAGP 1239
            DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPAL+RPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNE+ALFAARRNKRLV MEELELAKDKIMMGAERKSMVMTDKEKLNTAYHE+GHAIIGLV+P HDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQI+ QICSLFGGRIAEEMTLG NGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGK+KSG+TT RLDKE+RKIID+CYEQARQIL DNRDKLDAMAEALMK+ETIDA+QLKDIMEGR+PRPPEGWNDGDSSGGG  + DDKP+AK DE  P+  S++G     EDDDEPRRRPSDPLGGPAGP
Sbjct:   13 DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALLRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNEAALFAARRNKRLVGMEELELAKDKIMMGAERKSMVMTDKEKLNTAYHEAGHAIIGLVMPEHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQIISQICSLFGGRIAEEMTLGANGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKLKSGETTARLDKEVRKIIDECYEQARQILHDNRDKLDAMAEALMKFETIDASQLKDIMEGRDPRPPEGWNDGDSSGGGMRISDDKPEAKADEQAPNASSDEGE----EDDDEPRRRPSDPLGGPAGP 421
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BLAST of mRNA_E-siliculosus-1a_F_contig13545.2114.1 vs. uniprot
Match: A0A060B6G8_9GAMM (ATP-dependent zinc metalloprotease FtsH n=88 Tax=root TaxID=1 RepID=A0A060B6G8_9GAMM)

HSP 1 Score: 716 bits (1847), Expect = 9.760e-255
Identity = 368/413 (89.10%), Postives = 381/413 (92.25%), Query Frame = 1 
Query:    1 DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALMRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNESALFAARRNKRLVSMEELELAKDKIMMGAERKSMVMTDKEKLNTAYHESGHAIIGLVVPSHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQILGQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKMKSGDTTTRLDKEIRKIIDDCYEQARQILTDNRDKLDAMAEALMKYETIDANQLKDIMEGREPRPPEGWNDGDSSGGGTPVGDDKPQAKTDEDVPSGFSEDGSGSDGEDDDEPRRRPSDPLGGPAGP 1239
            DEIDAVGRSRG GMGGGNDEREQTLNQLLVEMDGFEANEG+IVIAATNRPDVLDPAL+RPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNE+ALFAARRNKRLV+MEELELAKDKIMMGAERKSMVMTDKEKLNTAYHESGHAIIGLV P HDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQIL QICSLFGGRIAEEMTLG NGVTTGASNDIKRATELAHNMVAKWGLS+EMGPIMYDEDESHQFLGGPGQGGGK+KSG+TT+RLDKE+RKIID+CYEQARQIL DNRDKLDAMAEALMKYETIDA+QLKDIMEGR+PRPPEGWNDGDSSGGGT V DDKP+ K                       PRRRPSDPLGGPAGP
Sbjct:  257 DEIDAVGRSRGAGMGGGNDEREQTLNQLLVEMDGFEANEGVIVIAATNRPDVLDPALLRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNEAALFAARRNKRLVAMEELELAKDKIMMGAERKSMVMTDKEKLNTAYHESGHAIIGLVAPEHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQILSQICSLFGGRIAEEMTLGANGVTTGASNDIKRATELAHNMVAKWGLSNEMGPIMYDEDESHQFLGGPGQGGGKLKSGETTSRLDKEVRKIIDECYEQARQILEDNRDKLDAMAEALMKYETIDADQLKDIMEGRDPRPPEGWNDGDSSGGGTRVSDDKPEEKAXXXXXXXXXXXXXXXXXXXXXXPRRRPSDPLGGPAGP 669
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BLAST of mRNA_E-siliculosus-1a_F_contig13545.2114.1 vs. uniprot
Match: A0A6H1Y3Q2_9GAMM (ATP-dependent zinc metalloprotease FtsH n=6 Tax=Halomonas TaxID=2745 RepID=A0A6H1Y3Q2_9GAMM)

HSP 1 Score: 710 bits (1832), Expect = 1.610e-252
Identity = 365/413 (88.38%), Postives = 381/413 (92.25%), Query Frame = 1 
Query:    1 DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALMRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNESALFAARRNKRLVSMEELELAKDKIMMGAERKSMVMTDKEKLNTAYHESGHAIIGLVVPSHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQILGQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKMKSGDTTTRLDKEIRKIIDDCYEQARQILTDNRDKLDAMAEALMKYETIDANQLKDIMEGREPRPPEGWNDGDSSGGGTPVGDDKPQAKTDEDVPSGFSEDGSGSDGEDDDEPRRRPSDPLGGPAGP 1239
            DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPAL+RPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNE+ALFAARRNKRLV M+ELELAKDKIMMGAERKSMVMTDKEKLNTAYHE+GHAIIGLV+P HDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQI+ QICSLFGGRIAEEMTLG NGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGK+KSG+TTTRLDKE+RKIID+CYEQARQIL DNRDKLDAMAEALMK+ETIDANQLKDIMEGR+PRPPEGW+DGDSSGGG  V DDKP  K+++                      RRPSDPLGGPAGP
Sbjct:  257 DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALLRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNEAALFAARRNKRLVGMDELELAKDKIMMGAERKSMVMTDKEKLNTAYHEAGHAIIGLVMPEHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQIISQICSLFGGRIAEEMTLGVNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKLKSGETTTRLDKEVRKIIDECYEQARQILHDNRDKLDAMAEALMKFETIDANQLKDIMEGRDPRPPEGWSDGDSSGGGMRVNDDKPDTKSEDQAXXXXXXXXXXXXXX----XXRRPSDPLGGPAGP 665
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BLAST of mRNA_E-siliculosus-1a_F_contig13545.2114.1 vs. uniprot
Match: UPI000367773F (ATP-dependent zinc metalloprotease FtsH n=2 Tax=Halomonas TaxID=2745 RepID=UPI000367773F)

HSP 1 Score: 705 bits (1819), Expect = 2.160e-250
Identity = 365/419 (87.11%), Postives = 378/419 (90.21%), Query Frame = 1 
Query:    1 DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALMRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNESALFAARRNKRLVSMEELELAKDKIMMGAERKSMVMTDKEKLNTAYHESGHAIIGLVVPSHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQILGQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKMKSGDTTTRLDKEIRKIIDDCYEQARQILTDNRDKLDAMAEALMKYETIDANQLKDIMEGREPRPPEGWNDGDSSGGGTPVGDDKPQAKTDEDVPSGFSEDGSGSDGEDDDEP------RRRPSDPLGGPAGP 1239
            DEIDAVGRSRG GMGGGNDEREQTLNQLLVEMDGFEANEG+IVIAATNRPDVLDPAL+RPGRFDRQVTVGLPDIRGREHILGVHLRKVPLA+DVKP +IARGTPGFSGADLANLVNESALFAARRNKRLV MEELELAKDKIMMGAERKSMVM+DKEKLNTAYHESGHA+IGL++P HDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQIL QICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGG K+KSGDTTTRLDKE+RKIID+CYEQARQIL DNRDKLDAM EALMKYETIDA QLKDIMEGREPRPPEGWNDGDSSGGGT V DDKP+A+ D                            RRRPSDPLGGP GP
Sbjct:  257 DEIDAVGRSRGAGMGGGNDEREQTLNQLLVEMDGFEANEGVIVIAATNRPDVLDPALLRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLAEDVKPSIIARGTPGFSGADLANLVNESALFAARRNKRLVGMEELELAKDKIMMGAERKSMVMSDKEKLNTAYHESGHAVIGLIMPEHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQILSQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGSKLKSGDTTTRLDKEVRKIIDECYEQARQILHDNRDKLDAMTEALMKYETIDAAQLKDIMEGREPRPPEGWNDGDSSGGGTRVSDDKPKAQGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRRPSDPLGGPTGP 675
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BLAST of mRNA_E-siliculosus-1a_F_contig13545.2114.1 vs. uniprot
Match: A0A1M7GG85_9GAMM (ATP-dependent zinc metalloprotease FtsH n=2 Tax=Halomonas TaxID=2745 RepID=A0A1M7GG85_9GAMM)

HSP 1 Score: 687 bits (1773), Expect = 1.380e-243
Identity = 354/413 (85.71%), Postives = 377/413 (91.28%), Query Frame = 1 
Query:    1 DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALMRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNESALFAARRNKRLVSMEELELAKDKIMMGAERKSMVMTDKEKLNTAYHESGHAIIGLVVPSHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQILGQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKMKSGDTTTRLDKEIRKIIDDCYEQARQILTDNRDKLDAMAEALMKYETIDANQLKDIMEGREPRPPEGWNDGDSSGGGTPVGDDKPQAKTDEDVPSGFSEDGSGSDGEDDDE-PRRRPSDPLGGPAG 1236
            DEIDAVGRSRG GMGGGNDEREQTLNQLLVEMDGFEANEG+IVIAATNRPDVLDPAL+RPGRFDRQVTVGLPDIRGREHILGVHLRKVPL DDVKP+LIARGTPGFSGADLANLVNE+ALFAAR NKRLV M+ELE AKDKI+MG+ERKSMVM+DKEKLNTAYHESGHA+IGL++P HDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQI+ QICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLS+EMGPIMYDEDESHQF+GG GQ GG +KSGDTTTRLDKE+RKIID CYEQA +IL DNRDKLDAM EALMKYETIDA+QLKDIM GR+PRPPEGW+DGDSSGGG       P        PS   +D SG DG++DDE PRRRPSDPLGGPAG
Sbjct:  258 DEIDAVGRSRGGGMGGGNDEREQTLNQLLVEMDGFEANEGVIVIAATNRPDVLDPALLRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLGDDVKPRLIARGTPGFSGADLANLVNEAALFAARGNKRLVGMDELEEAKDKILMGSERKSMVMSDKEKLNTAYHESGHAVIGLIMPEHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQIISQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSEEMGPIMYDEDESHQFMGG-GQSGGMLKSGDTTTRLDKEVRKIIDSCYEQAYKILEDNRDKLDAMTEALMKYETIDASQLKDIMNGRDPRPPEGWDDGDSSGGG-------PSLDKGTSGPSSSVDDASGDDGDEDDETPRRRPSDPLGGPAG 662
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BLAST of mRNA_E-siliculosus-1a_F_contig13545.2114.1 vs. uniprot
Match: A0A1G7T6Q3_9GAMM (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Halomonas taeanensis TaxID=284577 RepID=A0A1G7T6Q3_9GAMM)

HSP 1 Score: 678 bits (1750), Expect = 4.440e-240
Identity = 349/415 (84.10%), Postives = 370/415 (89.16%), Query Frame = 1 
Query:    1 DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALMRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNESALFAARRNKRLVSMEELELAKDKIMMGAERKSMVMTDKEKLNTAYHESGHAIIGLVVPSHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQILGQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKMKSGDTTTRLDKEIRKIIDDCYEQARQILTDNRDKLDAMAEALMKYETIDANQLKDIMEGREPRPPEGWNDGDSSG---GGTPVGDDKPQAKTDEDVPSGFSEDGSGSDGEDDDEPRRRPSDPLGGPAG 1236
            DEIDAVGRSRG GMGGGNDEREQTLNQLLVEMDGFEANEG+IVIAATNRPDVLDPAL+RPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKP LIARGTPGFSGADLANLVNE+ALF+ARRNKRLV MEEL+LAKDKIMMG+ERKSMVMTDKEKLNTAYHESGHAIIGLV+P HDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQI+ QICSLFGGR+AEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLS+EMGPIMYDEDESHQFLGGPGQGGGK KSGDTTT+LD+E+R+IID CY QA+QIL DNRDKLDAMAEALM+YETIDA+QL DIM+GR PRPP+ W+D   SG   GG P  DDK   K D+                    PRRRPSDPLGGPAG
Sbjct:  256 DEIDAVGRSRGAGMGGGNDEREQTLNQLLVEMDGFEANEGVIVIAATNRPDVLDPALLRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPSLIARGTPGFSGADLANLVNEAALFSARRNKRLVGMEELDLAKDKIMMGSERKSMVMTDKEKLNTAYHESGHAIIGLVMPEHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQIISQICSLFGGRLAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSEEMGPIMYDEDESHQFLGGPGQGGGKFKSGDTTTKLDQEVRRIIDGCYAQAKQILEDNRDKLDAMAEALMQYETIDADQLADIMDGRPPRPPKDWDDEGGSGSPIGGAPSADDKASGKEDDXXXXXXXXXXXXX-------PRRRPSDPLGGPAG 663
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BLAST of mRNA_E-siliculosus-1a_F_contig13545.2114.1 vs. uniprot
Match: A0A1G9NHZ9_9GAMM (ATP-dependent zinc metalloprotease FtsH n=13 Tax=Halomonadaceae TaxID=28256 RepID=A0A1G9NHZ9_9GAMM)

HSP 1 Score: 671 bits (1730), Expect = 4.510e-237
Identity = 344/412 (83.50%), Postives = 375/412 (91.02%), Query Frame = 1 
Query:    1 DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALMRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNESALFAARRNKRLVSMEELELAKDKIMMGAERKSMVMTDKEKLNTAYHESGHAIIGLVVPSHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQILGQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKMKSGDTTTRLDKEIRKIIDDCYEQARQILTDNRDKLDAMAEALMKYETIDANQLKDIMEGREPRPPEGWNDGDSSGGGTPVGDDKPQAKTDEDVPSGFSEDGSGSDGEDDDEPRRRPSDPLGGPAG 1236
            DEIDAVGR RG+GMGGG+DEREQTLNQLLVEMDGFEAN+GIIVIAATNRPDVLDPAL+RPGRFDRQVTV LPDIRGREHILGVHLRKVPL +DVKP LIARGTPGFSGADLANLVNE+ALFAARRN+RLV MEELELAKDKIMMG+ERKSMVM++KEKLNTAYHESGHAIIGL++P HDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQI+ QICSLFGGR+AEEMTLGPNGVTTGASNDIKRATELAH+MVAKWGLS+EMGP+MYDEDESHQFLG PGQGGGK+KSG+TTTRLDKE+R+IIDDCY QA+Q+L DNRDKLD MAEALM+YETIDA+QLKDIM GR+PRPP+ W+DG  SG G+ V D     K      SG +E   G D  +DDEP RRPSDPLGGPAG
Sbjct:  256 DEIDAVGRHRGSGMGGGHDEREQTLNQLLVEMDGFEANDGIIVIAATNRPDVLDPALLRPGRFDRQVTVPLPDIRGREHILGVHLRKVPLGEDVKPSLIARGTPGFSGADLANLVNEAALFAARRNRRLVGMEELELAKDKIMMGSERKSMVMSEKEKLNTAYHESGHAIIGLLMPEHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQIISQICSLFGGRLAEEMTLGPNGVTTGASNDIKRATELAHSMVAKWGLSEEMGPLMYDEDESHQFLGMPGQGGGKLKSGETTTRLDKEVRRIIDDCYTQAKQLLEDNRDKLDMMAEALMQYETIDADQLKDIMAGRQPRPPKDWDDGGDSGKGSRVSDAPDTRKR----ASGDAEADGGDD--EDDEPSRRPSDPLGGPAG 661
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BLAST of mRNA_E-siliculosus-1a_F_contig13545.2114.1 vs. uniprot
Match: A0A243T162_9GAMM (ATP-dependent zinc metalloprotease FtsH n=23 Tax=Halomonadaceae TaxID=28256 RepID=A0A243T162_9GAMM)

HSP 1 Score: 670 bits (1728), Expect = 1.330e-236
Identity = 347/420 (82.62%), Postives = 372/420 (88.57%), Query Frame = 1 
Query:    1 DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALMRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNESALFAARRNKRLVSMEELELAKDKIMMGAERKSMVMTDKEKLNTAYHESGHAIIGLVVPSHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQILGQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKMKSGDTTTRLDKEIRKIIDDCYEQARQILTDNRDKLDAMAEALMKYETIDANQLKDIMEGREPRPPEGWNDGDSSGGGTPVGDDKPQAKTDEDVPSGFSEDGSGSDGEDDDE--------PRRRPSDPLGGPAG 1236
            DEIDAVGRSRG GMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPAL+RPGRFDRQV V LPDIRGREHIL VHLRKVPLADDVKP LIARGTPGFSGADLANLVNE+ALFAARRNKRLV MEELELAKDKIMMGAER+SMVMTDKEKLNTAYHESGHAIIGLV+P HDPVYKVTIIPRGRALGVTMFLPE+DRYSLSRQQIL QICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLS+EMGPIMYDEDESHQFLGGPGQGGGK+KSG+T ++LDKE+RK+ID+CY +A+QIL +NRDKLDAMAEALM+YETIDA+QLKDIMEGR PRPP+ W DGDS  G    G+ +P+ + +   P+    D  G                PRRRPSDPLGGPAG
Sbjct:  256 DEIDAVGRSRGAGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALLRPGRFDRQVVVPLPDIRGREHILNVHLRKVPLADDVKPSLIARGTPGFSGADLANLVNEAALFAARRNKRLVGMEELELAKDKIMMGAERRSMVMTDKEKLNTAYHESGHAIIGLVMPEHDPVYKVTIIPRGRALGVTMFLPEQDRYSLSRQQILSQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSEEMGPIMYDEDESHQFLGGPGQGGGKLKSGETVSKLDKEVRKVIDECYAKAKQILEENRDKLDAMAEALMQYETIDADQLKDIMEGRTPRPPKDWEDGDSGTGAPVTGEAEPKPEAE---PAPQPTDSGGDXXXXXXXXXXXXXXXPRRRPSDPLGGPAG 672
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BLAST of mRNA_E-siliculosus-1a_F_contig13545.2114.1 vs. uniprot
Match: A0A291P2Q5_9GAMM (ATP-dependent zinc metalloprotease FtsH n=70 Tax=Halomonadaceae TaxID=28256 RepID=A0A291P2Q5_9GAMM)

HSP 1 Score: 668 bits (1723), Expect = 4.100e-236
Identity = 344/412 (83.50%), Postives = 378/412 (91.75%), Query Frame = 1 
Query:    1 DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALMRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNESALFAARRNKRLVSMEELELAKDKIMMGAERKSMVMTDKEKLNTAYHESGHAIIGLVVPSHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQILGQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKMKSGDTTTRLDKEIRKIIDDCYEQARQILTDNRDKLDAMAEALMKYETIDANQLKDIMEGREPRPPEGWNDGDSSGGGTPVGDDKPQAKTDEDVPSGFSEDGSGSDGEDDDEPRRRPSDPLGGPAG 1236
            DEIDAVGRSRG GMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPAL+RPGRFDRQV V LPDIRGREHIL VHLRKVPLADDVKP LIARGTPGFSGADLANLVNE+ALFAARRNKRLV MEELE+AKDKIMMGAER+SMVMT+KEKLNTAYHESGHAIIGL++P HDPVYKVTIIPRGRALGVTMFLPE+DR+SLSRQQI+ QICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLS+EMGP+MYDEDESHQFLGGPGQGG K+KSG+TTT+LDKE+R+IID+CY+QA ++L +NRDKLDAMAEALM+YETIDA+QLKDIMEGR PRPP+ W++G   G G+PV  ++PQ +      S  ++DG     EDD+EP RRPSDPLGGPAG
Sbjct:  256 DEIDAVGRSRGAGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALLRPGRFDRQVVVPLPDIRGREHILNVHLRKVPLADDVKPSLIARGTPGFSGADLANLVNEAALFAARRNKRLVGMEELEMAKDKIMMGAERRSMVMTEKEKLNTAYHESGHAIIGLLMPEHDPVYKVTIIPRGRALGVTMFLPEQDRFSLSRQQIISQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSEEMGPVMYDEDESHQFLGGPGQGG-KLKSGETTTKLDKEVRRIIDECYQQAEKLLEENRDKLDAMAEALMQYETIDADQLKDIMEGRSPRPPKDWDEG-GPGSGSPV-TEQPQGE------SSPADDGD----EDDEEPSRRPSDPLGGPAG 654
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BLAST of mRNA_E-siliculosus-1a_F_contig13545.2114.1 vs. uniprot
Match: W1N6I7_9GAMM (ATP-dependent zinc metalloprotease FtsH n=22 Tax=Halomonadaceae TaxID=28256 RepID=W1N6I7_9GAMM)

HSP 1 Score: 661 bits (1705), Expect = 2.920e-233
Identity = 344/416 (82.69%), Postives = 368/416 (88.46%), Query Frame = 1 
Query:    1 DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALMRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIARGTPGFSGADLANLVNESALFAARRNKRLVSMEELELAKDKIMMGAERKSMVMTDKEKLNTAYHESGHAIIGLVVPSHDPVYKVTIIPRGRALGVTMFLPEEDRYSLSRQQILGQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKMKSGDTTTRLDKEIRKIIDDCYEQARQILTDNRDKLDAMAEALMKYETIDANQLKDIMEGREPRPPEGWNDGDSSGG----GTPVGDDKPQAKTDEDVPSGFSEDGSGSDGEDDDEPRRRPSDPLGGPAG 1236
            DEIDAVGRSRG GMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPAL+RPGRFDRQV V LPDIRGREHIL VHLRKVPLADDVKP  IARGTPGFSGADLANLVNE ALFAARRNKRLV MEELE+AKDKIMMGAER+SMVMT+KEKLNTAYHE+GHAIIGLV+P HDPVYKVTIIPRGRALGVTMFLPE+DRYSLSRQQI+ QICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLS+EMGPIMYDEDESHQFLGG GQ GGK+KSG+TTTRLDKE+RKIID CY QA QIL+DNRDKLDAMAEALM+YETIDA+QLKDIMEGR PRPP+ W+D  S+GG    GTP  +++P+A ++                     P RRPSDPLGGPAG
Sbjct:  253 DEIDAVGRSRGAGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRPDVLDPALLRPGRFDRQVVVPLPDIRGREHILNVHLRKVPLADDVKPSFIARGTPGFSGADLANLVNEGALFAARRNKRLVGMEELEMAKDKIMMGAERRSMVMTEKEKLNTAYHEAGHAIIGLVMPEHDPVYKVTIIPRGRALGVTMFLPEQDRYSLSRQQIISQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELAHNMVAKWGLSEEMGPIMYDEDESHQFLGGAGQSGGKLKSGETTTRLDKEVRKIIDGCYAQAEQILSDNRDKLDAMAEALMQYETIDADQLKDIMEGRSPRPPKDWDDRGSNGGSPVSGTPA-EEEPEASSNXXXXXXXXXXXXXXXA-----PDRRPSDPLGGPAG 662
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13545.2114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A356SUV2_HALSX3.760e-26991.28ATP-dependent metalloprotease (Fragment) n=2 Tax=H... [more]
A0A060B6G8_9GAMM9.760e-25589.10ATP-dependent zinc metalloprotease FtsH n=88 Tax=r... [more]
A0A6H1Y3Q2_9GAMM1.610e-25288.38ATP-dependent zinc metalloprotease FtsH n=6 Tax=Ha... [more]
UPI000367773F2.160e-25087.11ATP-dependent zinc metalloprotease FtsH n=2 Tax=Ha... [more]
A0A1M7GG85_9GAMM1.380e-24385.71ATP-dependent zinc metalloprotease FtsH n=2 Tax=Ha... [more]
A0A1G7T6Q3_9GAMM4.440e-24084.10ATP-dependent zinc metalloprotease FtsH n=1 Tax=Ha... [more]
A0A1G9NHZ9_9GAMM4.510e-23783.50ATP-dependent zinc metalloprotease FtsH n=13 Tax=H... [more]
A0A243T162_9GAMM1.330e-23682.62ATP-dependent zinc metalloprotease FtsH n=23 Tax=H... [more]
A0A291P2Q5_9GAMM4.100e-23683.50ATP-dependent zinc metalloprotease FtsH n=70 Tax=H... [more]
W1N6I7_9GAMM2.920e-23382.69ATP-dependent zinc metalloprotease FtsH n=22 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13545contigE-siliculosus-1a_F_contig13545:44..1285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size1242
Model size1242
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00002,ko01000,ko01002,ko03110
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.O
EggNOG OGs1MU6J@1224,1RME8@1236,1XIG3@135619,COG0465@1,COG0465@2
EggNOG free text desc.Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0004222,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0010468,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030145,GO:0030163,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043273,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098796,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575
KEGG ModuleM00742
KEGG koko:K03798
Preferred nameftsH
Seed eggNOG ortholog1380358.JADJ01000015_gene2338
Seed ortholog evalue1.6e-211
Seed ortholog score741.9
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.357036-CDS-E-siliculosus-1a_F_contig13545:43..12851622927869.357036-CDS-E-siliculosus-1a_F_contig13545:43..1285Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13545 44..1285 -
1696318716.4169312-CDS-E-siliculosus-1a_F_contig13545:43..12851696318716.4169312-CDS-E-siliculosus-1a_F_contig13545:43..1285Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13545 44..1285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13545.2114.1prot_E-siliculosus-1a_F_contig13545.2114.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13545 44..1285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13545.2114.1

>prot_E-siliculosus-1a_F_contig13545.2114.1 ID=prot_E-siliculosus-1a_F_contig13545.2114.1|Name=mRNA_E-siliculosus-1a_F_contig13545.2114.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=414bp
DEIDAVGRSRGTGMGGGNDEREQTLNQLLVEMDGFEANEGIIVIAATNRP
DVLDPALMRPGRFDRQVTVGLPDIRGREHILGVHLRKVPLADDVKPQLIA
RGTPGFSGADLANLVNESALFAARRNKRLVSMEELELAKDKIMMGAERKS
MVMTDKEKLNTAYHESGHAIIGLVVPSHDPVYKVTIIPRGRALGVTMFLP
EEDRYSLSRQQILGQICSLFGGRIAEEMTLGPNGVTTGASNDIKRATELA
HNMVAKWGLSDEMGPIMYDEDESHQFLGGPGQGGGKMKSGDTTTRLDKEI
RKIIDDCYEQARQILTDNRDKLDAMAEALMKYETIDANQLKDIMEGREPR
PPEGWNDGDSSGGGTPVGDDKPQAKTDEDVPSGFSEDGSGSDGEDDDEPR
RRPSDPLGGPAGP*
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mRNA from alignment at E-siliculosus-1a_F_contig13545:44..1285-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13545.2114.1 ID=mRNA_E-siliculosus-1a_F_contig13545.2114.1|Name=mRNA_E-siliculosus-1a_F_contig13545.2114.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1242bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13545:44..1285- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATGAAATCGACGCTGTAGGCCGCTCTCGTGGCACCGGTATGGGCGGTGG
TAACGACGAGCGTGAGCAGACGTTGAACCAGCTGCTAGTCGAGATGGATG
GCTTTGAAGCAAACGAAGGCATCATCGTGATTGCTGCGACCAACCGTCCT
GACGTGCTTGACCCCGCGCTTATGCGCCCAGGTCGCTTTGACCGTCAGGT
AACCGTAGGCTTGCCCGATATCCGTGGTCGTGAACACATTTTGGGTGTCC
ATCTGCGCAAAGTGCCACTTGCCGATGACGTTAAGCCACAGCTGATCGCG
CGCGGTACACCAGGCTTCTCCGGTGCGGATTTGGCTAACCTGGTTAACGA
GTCTGCACTGTTTGCGGCGCGTCGTAATAAGCGCCTAGTGAGCATGGAAG
AGCTTGAGCTTGCTAAAGATAAGATCATGATGGGCGCTGAGCGTAAATCG
ATGGTCATGACCGACAAAGAGAAGCTCAATACGGCTTACCATGAATCTGG
TCACGCGATTATTGGTTTAGTGGTGCCTTCGCATGACCCAGTTTACAAGG
TGACTATTATCCCGCGTGGTCGTGCGTTGGGTGTGACTATGTTCTTGCCG
GAAGAAGATCGTTACAGCCTGTCGCGCCAACAGATTTTGGGGCAAATCTG
CTCGCTGTTTGGTGGTCGTATTGCTGAAGAGATGACGCTAGGTCCTAACG
GTGTCACCACTGGCGCCTCTAATGACATCAAACGTGCCACTGAGCTTGCC
CATAATATGGTCGCTAAGTGGGGCTTGTCAGATGAGATGGGCCCGATTAT
GTACGACGAAGATGAGTCGCATCAGTTCCTGGGCGGCCCAGGCCAAGGCG
GCGGTAAGATGAAGTCAGGCGACACTACCACTCGCCTTGATAAGGAAATT
CGCAAGATTATTGATGATTGCTATGAGCAGGCGCGTCAGATATTGACTGA
CAATCGCGATAAGCTCGATGCCATGGCAGAAGCCTTGATGAAGTATGAAA
CCATTGATGCCAATCAGTTAAAAGACATCATGGAAGGGCGTGAACCGCGT
CCGCCAGAAGGCTGGAACGATGGTGACTCATCGGGTGGTGGTACGCCTGT
CGGTGATGACAAGCCACAGGCTAAAACTGATGAAGATGTACCTTCCGGCT
TTTCTGAAGACGGTTCAGGCAGCGATGGTGAAGATGATGATGAGCCACGC
CGCCGTCCCTCTGACCCGCTAGGCGGCCCTGCTGGGCCATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13545:44..1285-

>mRNA_E-siliculosus-1a_F_contig13545.2114.1 ID=mRNA_E-siliculosus-1a_F_contig13545.2114.1|Name=mRNA_E-siliculosus-1a_F_contig13545.2114.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2484bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13545:44..1285- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATGAAATCGACGCTGTAGGCCGCTCTCGTGGCACCGGTATGGGCGGTGG
TAACGACGAGCGTGAGCAGACGTTGAACCAGCTGCTAGTCGAGATGGATG
GCTTTGAAGCAAACGAAGGCATCATCGTGATTGCTGCGACCAACCGTCCT
GACGTGCTTGACCCCGCGCTTATGCGCCCAGGTCGCTTTGACCGTCAGGT
AACCGTAGGCTTGCCCGATATCCGTGGTCGTGAACACATTTTGGGTGTCC
ATCTGCGCAAAGTGCCACTTGCCGATGACGTTAAGCCACAGCTGATCGCG
CGCGGTACACCAGGCTTCTCCGGTGCGGATTTGGCTAACCTGGTTAACGA
GTCTGCACTGTTTGCGGCGCGTCGTAATAAGCGCCTAGTGAGCATGGAAG
AGCTTGAGCTTGCTAAAGATAAGATCATGATGGGCGCTGAGCGTAAATCG
ATGGTCATGACCGACAAAGAGAAGCTCAATACGGCTTACCATGAATCTGG
TCACGCGATTATTGGTTTAGTGGTGCCTTCGCATGACCCAGTTTACAAGG
TGACTATTATCCCGCGTGGTCGTGCGTTGGGTGTGACTATGTTCTTGCCG
GAAGAAGATCGTTACAGCCTGTCGCGCCAACAGATTTTGGGGCAAATCTG
CTCGCTGTTTGGTGGTCGTATTGCTGAAGAGATGACGCTAGGTCCTAACG
GTGTCACCACTGGCGCCTCTAATGACATCAAACGTGCCACTGAGCTTGCC
CATAATATGGTCGCTAAGTGGGGCTTGTCAGATGAGATGGGCCCGATTAT
GTACGACGAAGATGAGTCGCATCAGTTCCTGGGCGGCCCAGGCCAAGGCG
GCGGTAAGATGAAGTCAGGCGACACTACCACTCGCCTTGATAAGGAAATT
CGCAAGATTATTGATGATTGCTATGAGCAGGCGCGTCAGATATTGACTGA
CAATCGCGATAAGCTCGATGCCATGGCAGAAGCCTTGATGAAGTATGAAA
CCATTGATGCCAATCAGTTAAAAGACATCATGGAAGGGCGTGAACCGCGT
CCGCCAGAAGGCTGGAACGATGGTGACTCATCGGGTGGTGGTACGCCTGT
CGGTGATGACAAGCCACAGGCTAAAACTGATGAAGATGTACCTTCCGGCT
TTTCTGAAGACGGTTCAGGCAGCGATGGTGAAGATGATGATGAGCCACGC
CGCCGTCCCTCTGACCCGCTAGGCGGCCCTGCTGGGCCATAGGATGAAAT
CGACGCTGTAGGCCGCTCTCGTGGCACCGGTATGGGCGGTGGTAACGACG
AGCGTGAGCAGACGTTGAACCAGCTGCTAGTCGAGATGGATGGCTTTGAA
GCAAACGAAGGCATCATCGTGATTGCTGCGACCAACCGTCCTGACGTGCT
TGACCCCGCGCTTATGCGCCCAGGTCGCTTTGACCGTCAGGTAACCGTAG
GCTTGCCCGATATCCGTGGTCGTGAACACATTTTGGGTGTCCATCTGCGC
AAAGTGCCACTTGCCGATGACGTTAAGCCACAGCTGATCGCGCGCGGTAC
ACCAGGCTTCTCCGGTGCGGATTTGGCTAACCTGGTTAACGAGTCTGCAC
TGTTTGCGGCGCGTCGTAATAAGCGCCTAGTGAGCATGGAAGAGCTTGAG
CTTGCTAAAGATAAGATCATGATGGGCGCTGAGCGTAAATCGATGGTCAT
GACCGACAAAGAGAAGCTCAATACGGCTTACCATGAATCTGGTCACGCGA
TTATTGGTTTAGTGGTGCCTTCGCATGACCCAGTTTACAAGGTGACTATT
ATCCCGCGTGGTCGTGCGTTGGGTGTGACTATGTTCTTGCCGGAAGAAGA
TCGTTACAGCCTGTCGCGCCAACAGATTTTGGGGCAAATCTGCTCGCTGT
TTGGTGGTCGTATTGCTGAAGAGATGACGCTAGGTCCTAACGGTGTCACC
ACTGGCGCCTCTAATGACATCAAACGTGCCACTGAGCTTGCCCATAATAT
GGTCGCTAAGTGGGGCTTGTCAGATGAGATGGGCCCGATTATGTACGACG
AAGATGAGTCGCATCAGTTCCTGGGCGGCCCAGGCCAAGGCGGCGGTAAG
ATGAAGTCAGGCGACACTACCACTCGCCTTGATAAGGAAATTCGCAAGAT
TATTGATGATTGCTATGAGCAGGCGCGTCAGATATTGACTGACAATCGCG
ATAAGCTCGATGCCATGGCAGAAGCCTTGATGAAGTATGAAACCATTGAT
GCCAATCAGTTAAAAGACATCATGGAAGGGCGTGAACCGCGTCCGCCAGA
AGGCTGGAACGATGGTGACTCATCGGGTGGTGGTACGCCTGTCGGTGATG
ACAAGCCACAGGCTAAAACTGATGAAGATGTACCTTCCGGCTTTTCTGAA
GACGGTTCAGGCAGCGATGGTGAAGATGATGATGAGCCACGCCGCCGTCC
CTCTGACCCGCTAGGCGGCCCTGCTGGGCCATAG
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