mRNA_E-siliculosus-1a_F_contig13542.2113.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13542.2113.1
Unique NamemRNA_E-siliculosus-1a_F_contig13542.2113.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13542.2113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13542contigE-siliculosus-1a_F_contig13542:727..1045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size300
Model size319
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.2963564-UTR-E-siliculosus-1a_F_contig13542:726..7451622927869.2963564-UTR-E-siliculosus-1a_F_contig13542:726..745Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig13542 727..745 +
1696318716.398161-UTR-E-siliculosus-1a_F_contig13542:726..7451696318716.398161-UTR-E-siliculosus-1a_F_contig13542:726..745Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig13542 727..745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.3100321-CDS-E-siliculosus-1a_F_contig13542:745..10451622927869.3100321-CDS-E-siliculosus-1a_F_contig13542:745..1045Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13542 746..1045 +
1696318716.4072156-CDS-E-siliculosus-1a_F_contig13542:745..10451696318716.4072156-CDS-E-siliculosus-1a_F_contig13542:745..1045Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13542 746..1045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13542.2113.1prot_E-siliculosus-1a_F_contig13542.2113.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13542 746..1045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13542.2113.1

>prot_E-siliculosus-1a_F_contig13542.2113.1 ID=prot_E-siliculosus-1a_F_contig13542.2113.1|Name=mRNA_E-siliculosus-1a_F_contig13542.2113.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=100bp
MGNRARQQGGCLLATSSRAAHTPWRAGGAREEIHEAQPPKTGVLHGHTRC
IQKHVGFAKLYPHGILFDGPWTKLDSEPENHGRRGGGVAVLLPLVRPHV*
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mRNA from alignment at E-siliculosus-1a_F_contig13542:727..1045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13542.2113.1 ID=mRNA_E-siliculosus-1a_F_contig13542.2113.1|Name=mRNA_E-siliculosus-1a_F_contig13542.2113.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=319bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13542:727..1045+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGCGAGGGGGTACATTGGATGGGGAACAGGGCACGGCAGCAGGGTGGTT
GCTTGCTTGCTACGAGTAGTCGTGCTGCGCACACGCCTTGGCGAGCAGGG
GGCGCGCGAGAGGAGATACATGAAGCACAACCCCCCAAAACTGGAGTACT
GCATGGGCATACTCGATGTATACAAAAACATGTAGGTTTTGCTAAGTTAT
ATCCACACGGGATCCTGTTCGATGGCCCCTGGACAAAACTGGATTCAGAG
CCCGAAAATCACGGGCGGCGAGGGGGAGGGGTAGCTGTGCTGCTTCCTCT
TGTGCGCCCCCACGTATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13542:727..1045+

>mRNA_E-siliculosus-1a_F_contig13542.2113.1 ID=mRNA_E-siliculosus-1a_F_contig13542.2113.1|Name=mRNA_E-siliculosus-1a_F_contig13542.2113.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13542:727..1045+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGAACAGGGCACGGCAGCAGGGTGGTTGCTTGCTTGCTACGAGTAG
TCGTGCTGCGCACACGCCTTGGCGAGCAGGGGGCGCGCGAGAGGAGATAC
ATGAAGCACAACCCCCCAAAACTGGAGTACTGCATGGGCATACTCGATGT
ATACAAAAACATGTAGGTTTTGCTAAGTTATATCCACACGGGATCCTGTT
CGATGGCCCCTGGACAAAACTGGATTCAGAGCCCGAAAATCACGGGCGGC
GAGGGGGAGGGGTAGCTGTGCTGCTTCCTCTTGTGCGCCCCCACGTATAG
ATGGGGAACAGGGCACGGCAGCAGGGTGGTTGCTTGCTTGCTACGAGTAG
TCGTGCTGCGCACACGCCTTGGCGAGCAGGGGGCGCGCGAGAGGAGATAC
ATGAAGCACAACCCCCCAAAACTGGAGTACTGCATGGGCATACTCGATGT
ATACAAAAACATGTAGGTTTTGCTAAGTTATATCCACACGGGATCCTGTT
CGATGGCCCCTGGACAAAACTGGATTCAGAGCCCGAAAATCACGGGCGGC
GAGGGGGAGGGGTAGCTGTGCTGCTTCCTCTTGTGCGCCCCCACGTATAG
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