mRNA_E-siliculosus-1a_F_contig1354.2112.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1354.2112.1
Unique NamemRNA_E-siliculosus-1a_F_contig1354.2112.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1354.2112.1 vs. uniprot
Match: A0A6H5JQJ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 8.610e-21
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:    1 TSLESRLHHCVSVWDAWETVRNWILQKSDDQLYLLEQELETQEMRSDDENTCEFFSRFDATLNTLKAAGIQKSERDIIRIIIRQLPAKYDTEKYSTLSEPGLSRQRVEEII 333
            T +E RL  C  V +AW  +  W+L   D +  LL + LET EM   ++    FF+R D  +N +KA GI+KSER I+ II+RQL  KYD E+ S L++P +SR +VE ++
Sbjct:    8 TDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKL-FFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHKYDIERESILADPTISRAKVENVV 117
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1354.2112.1 vs. uniprot
Match: A0A6H5K4K8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.490e-19
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 1 
Query:    1 TSLESRLHHCVSVWDAWETVRNWILQKSDDQLYLLEQELETQEMRSDDENTCEFFSRFDATLNTLKAAGIQKSERDIIRIIIRQLPAKYDTEKYSTLSEPGLSRQRVEEII 333
            T +E RL  C  V +AW  +  W+L   D +  LL + LET EM   ++    FF+R D  +N +KA GI+KSER I+ II+RQL  +YD E+ S L +P +SR +VE ++
Sbjct:    8 TDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKL-FFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILVDPTISRAKVENVV 117
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1354.2112.1 vs. uniprot
Match: A0A6H5JQ49_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ49_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.650e-18
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:    1 TSLESRLHHCVSVWDAWETVRNWILQKSDDQLYLLEQELETQEMRSDDENTCEFFSRFDATLNTLKAAGIQKSERDIIRIIIRQLPAKYDTEKYSTLSEPGLSRQRVEEII 333
            T +E RL  C  V +AW  +  W+L   D +  LL + LET EM   ++    FF+R D  +N +KA GI+KSER I+ II+RQL  +YD E+ S L++P +SR +VE ++
Sbjct:    8 TDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKL-FFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVV 117
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1354.2112.1 vs. uniprot
Match: A0A6H5JS28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS28_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.300e-18
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:    1 TSLESRLHHCVSVWDAWETVRNWILQKSDDQLYLLEQELETQEMRSDDENTCEFFSRFDATLNTLKAAGIQKSERDIIRIIIRQLPAKYDTEKYSTLSEPGLSRQRVEEII 333
            T +E RL  C  V +AW  +  W+L   D +  LL + LET EM   ++    FF+R D  +N +KA GI+KSER I+ II+RQL  +YD E+ S L++P +SR +VE ++
Sbjct:    8 TDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKL-FFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVV 117
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1354.2112.1 vs. uniprot
Match: A0A6H5KIP6_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.360e-18
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:    1 TSLESRLHHCVSVWDAWETVRNWILQKSDDQLYLLEQELETQEMRSDDENTCEFFSRFDATLNTLKAAGIQKSERDIIRIIIRQLPAKYDTEKYSTLSEPGLSRQRVEEII 333
            T +E RL  C  V +AW  +  W+L   D +  LL + LET EM   ++    FF+R D  +N +KA GI+KSER I+ II+RQL  +YD E+ S L++P +SR +VE ++
Sbjct:  140 TDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKL-FFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVV 249
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1354.2112.1 vs. uniprot
Match: A0A6H5JNE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE4_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.400e-18
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:    1 TSLESRLHHCVSVWDAWETVRNWILQKSDDQLYLLEQELETQEMRSDDENTCEFFSRFDATLNTLKAAGIQKSERDIIRIIIRQLPAKYDTEKYSTLSEPGLSRQRVEEII 333
            T +E RL  C  V +AW  +  W+L   D +  LL + LET EM   ++    FF+R D  +N +KA GI+KSER I+ II+RQL  +YD E+ S L++P +SR +VE ++
Sbjct:  195 TDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKL-FFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVV 304
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1354.2112.1 vs. uniprot
Match: A0A6H5L4A7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.470e-18
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:    1 TSLESRLHHCVSVWDAWETVRNWILQKSDDQLYLLEQELETQEMRSDDENTCEFFSRFDATLNTLKAAGIQKSERDIIRIIIRQLPAKYDTEKYSTLSEPGLSRQRVEEII 333
            T +E RL  C  V +AW  +  W+L   D +  LL + LET EM   ++    FF+R D  +N +KA GI+KSER I+ II+RQL  +YD E+ S L++P +SR +VE ++
Sbjct:  140 TDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKL-FFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVV 249
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1354.2112.1 vs. uniprot
Match: A0A6H5KYI1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI1_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.520e-18
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:    1 TSLESRLHHCVSVWDAWETVRNWILQKSDDQLYLLEQELETQEMRSDDENTCEFFSRFDATLNTLKAAGIQKSERDIIRIIIRQLPAKYDTEKYSTLSEPGLSRQRVEEII 333
            T +E RL  C  V +AW  +  W+L   D +  LL + LET EM   ++    FF+R D  +N +KA GI+KSER I+ II+RQL  +YD E+ S L++P +SR +VE ++
Sbjct:  140 TDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKL-FFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVV 249
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1354.2112.1 vs. uniprot
Match: A0A6H5L089_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L089_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.550e-16
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 TSLESRLHHCVSVWDAWETVRNWILQKSDDQLYLLEQELETQEMRSDDENTCEFFSRFDATLNTLKAAGIQKSERDIIRIIIRQLPAKYDTEKYSTLSE 297
            + +E  L  C  V +AW  +R W L  +D +  LLE++LET EM S  EN   FF+R D  +NT++A GI+KSER I++ I+RQL + YD E+ +TLS+
Sbjct:  458 SDIEETLFACSCVPEAWTAIREWSLPTTDAEQRLLERQLETVEM-SPGENPKLFFARVDGIVNTMRAVGIEKSERQIVQTIVRQLSSDYDVERKTTLSD 555
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1354.2112.1 vs. uniprot
Match: A0A6H5L646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L646_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.190e-15
Identity = 44/108 (40.74%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   10 ESRLHHCVSVWDAWETVRNWILQKSDDQLYLLEQELETQEMRSDDENTCEFFSRFDATLNTLKAAGIQKSERDIIRIIIRQLPAKYDTEKYSTLSEPGLSRQRVEEII 333
            E+ L+ C SV +AW  + +W L        LL  ELE   M SDDE+   FFSR       L+AAGI KSE+++++I++RQLPA++D EK ++LS+  L+R  +++++
Sbjct:  178 ENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELENITM-SDDEDPKLFFSRVAQLETKLRAAGIAKSEQEVVQILVRQLPARFDVEKRTSLSKRDLTRAELQDVV 284
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1354.2112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JQJ2_9PHAE8.610e-2143.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K4K8_9PHAE7.490e-1942.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQ49_9PHAE2.650e-1842.34Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS28_9PHAE3.300e-1842.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIP6_9PHAE4.360e-1842.34CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JNE4_9PHAE4.400e-1842.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4A7_9PHAE4.470e-1842.34CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KYI1_9PHAE4.520e-1842.34CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L089_9PHAE2.550e-1645.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L646_9PHAE3.190e-1540.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1354contigE-siliculosus-1a_F_contig1354:12213..12545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size333
Model size333
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.2511306-CDS-E-siliculosus-1a_F_contig1354:12212..125451622927869.2511306-CDS-E-siliculosus-1a_F_contig1354:12212..12545Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1354 12213..12545 -
1696318716.389628-CDS-E-siliculosus-1a_F_contig1354:12212..125451696318716.389628-CDS-E-siliculosus-1a_F_contig1354:12212..12545Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1354 12213..12545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1354.2112.1prot_E-siliculosus-1a_F_contig1354.2112.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1354 12213..12545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1354.2112.1

>prot_E-siliculosus-1a_F_contig1354.2112.1 ID=prot_E-siliculosus-1a_F_contig1354.2112.1|Name=mRNA_E-siliculosus-1a_F_contig1354.2112.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=111bp
TSLESRLHHCVSVWDAWETVRNWILQKSDDQLYLLEQELETQEMRSDDEN
TCEFFSRFDATLNTLKAAGIQKSERDIIRIIIRQLPAKYDTEKYSTLSEP
GLSRQRVEEII
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mRNA from alignment at E-siliculosus-1a_F_contig1354:12213..12545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1354.2112.1 ID=mRNA_E-siliculosus-1a_F_contig1354.2112.1|Name=mRNA_E-siliculosus-1a_F_contig1354.2112.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=333bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1354:12213..12545- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGTCGCTTGAGTCTCGACTTCATCACTGTGTTTCTGTGTGGGATGCGTG
GGAGACGGTCAGAAATTGGATTCTCCAGAAGAGTGATGACCAGCTGTATC
TCTTGGAACAGGAACTTGAGACACAGGAGATGCGCTCAGACGATGAGAAC
ACCTGCGAGTTTTTCTCGCGGTTTGACGCGACCTTGAACACGCTGAAAGC
TGCAGGGATTCAGAAATCGGAGCGAGATATCATACGAATCATCATTCGCC
AACTTCCAGCAAAGTACGACACCGAGAAATACTCAACCCTTTCTGAACCG
GGTCTATCGAGACAACGGGTAGAGGAGATTATC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1354:12213..12545-

>mRNA_E-siliculosus-1a_F_contig1354.2112.1 ID=mRNA_E-siliculosus-1a_F_contig1354.2112.1|Name=mRNA_E-siliculosus-1a_F_contig1354.2112.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1354:12213..12545- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGTCGCTTGAGTCTCGACTTCATCACTGTGTTTCTGTGTGGGATGCGTG
GGAGACGGTCAGAAATTGGATTCTCCAGAAGAGTGATGACCAGCTGTATC
TCTTGGAACAGGAACTTGAGACACAGGAGATGCGCTCAGACGATGAGAAC
ACCTGCGAGTTTTTCTCGCGGTTTGACGCGACCTTGAACACGCTGAAAGC
TGCAGGGATTCAGAAATCGGAGCGAGATATCATACGAATCATCATTCGCC
AACTTCCAGCAAAGTACGACACCGAGAAATACTCAACCCTTTCTGAACCG
GGTCTATCGAGACAACGGGTAGAGGAGATTATCACGTCGCTTGAGTCTCG
ACTTCATCACTGTGTTTCTGTGTGGGATGCGTGGGAGACGGTCAGAAATT
GGATTCTCCAGAAGAGTGATGACCAGCTGTATCTCTTGGAACAGGAACTT
GAGACACAGGAGATGCGCTCAGACGATGAGAACACCTGCGAGTTTTTCTC
GCGGTTTGACGCGACCTTGAACACGCTGAAAGCTGCAGGGATTCAGAAAT
CGGAGCGAGATATCATACGAATCATCATTCGCCAACTTCCAGCAAAGTAC
GACACCGAGAAATACTCAACCCTTTCTGAACCGGGTCTATCGAGACAACG
GGTAGAGGAGATTATC
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