mRNA_E-siliculosus-1a_F_contig1353.2111.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1353.2111.1
Unique NamemRNA_E-siliculosus-1a_F_contig1353.2111.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2111.1 vs. uniprot
Match: A0A6H5JX10_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX10_9PHAE)

HSP 1 Score: 380 bits (975), Expect = 1.510e-119
Identity = 183/194 (94.33%), Postives = 188/194 (96.91%), Query Frame = 3 
Query:    3 VTDVPLLAGGENKRVTDKNKQEFVHLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHRWAIDKGPAADVCPTASTCDRRMSLPQYSSKEAAFKFLTITLELGCLGYTTV 584
            V DVPLLAGGENKRVTD NKQEFV+LATRRRALGGAEKA+AALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLS+LRTNVWYVE D GFGCSH+SVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDH WAIDKGPAA+VCPTASTCDRRMSLPQYSSKEAAFKFL ITLELGCLGYTTV
Sbjct: 1238 VADVPLLAGGENKRVTDNNKQEFVNLATRRRALGGAEKAIAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSKLRTNVWYVEGDEGFGCSHRSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHSWAIDKGPAANVCPTASTCDRRMSLPQYSSKEAAFKFLNITLELGCLGYTTV 1431
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2111.1 vs. uniprot
Match: D8LKA6_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKA6_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 3.550e-100
Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 3 
Query:    3 VTDVPLLAGGENKRVTDKNKQEFVHLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHRWAIDKGPAADVCPTAST 482
            VTDVPLLAGGENKRVTDKNKQEFV+LATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKS+RWFWEW NELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHRWAIDKGPAA+VCPTAST
Sbjct: 1059 VTDVPLLAGGENKRVTDKNKQEFVNLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSIRWFWEWTNELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHRWAIDKGPAANVCPTAST 1218
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2111.1 vs. uniprot
Match: A0A7S3UXC4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXC4_HETAK)

HSP 1 Score: 116 bits (291), Expect = 1.610e-27
Identity = 79/194 (40.72%), Postives = 101/194 (52.06%), Query Frame = 3 
Query:    9 DVPLLAGGENKRVTDKNKQEFVHLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYV---ESDGGFGCSHKSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHRWAI--DKGPAADVCPTASTCDRRMSLPQYSSKEAAFKFLTITLELGCLGY 575
            +  L  GG    VT  ++ E+  L  RR A  GAE+ VAALR G+TDV+P  LL++L P E+   V+GP   V+L+ L     YV   E + G G +H   R FWE A  L     R LL FWSGS+  PPF   D    E+  W I  D        P A+TCDR + LP Y SKE   K L + +E G  G+
Sbjct:  149 EAELKPGGAAAPVTLASRGEYARLFARRAATRGAEREVAALRLGLTDVVPPGLLAVLHPAEIYEAVAGPD-TVDLARLERATEYVINGEVNRGSG-AHPLARAFWEVAAALAPPALRALLRFWSGSAH-PPFAGAD---REEEVWTITFDHSDNPSNLPQATTCDRNLFLPPYKSKEELKKKLLMAMEFGAAGF 336
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2111.1 vs. uniprot
Match: A0A1V9ZEA6_9STRA (Hect domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEA6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 9.190e-26
Identity = 75/196 (38.27%), Postives = 104/196 (53.06%), Query Frame = 3 
Query:   12 VPLLAGGENKRVTDKNKQEFVHLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHRWAIDKGPAAD-----VCPTASTCDRRMSLPQYSSKEAAFKFLTITLELGCLGYTTV 584
            V L   G    VT++NK  FV L   R A G    A+AA+R G   V+P   L++L   E+AS+V+GP+  ++L++L+ +V Y          H ++  FW   + L   D  KLLLFWSGS R PPFGF  +  ++   W+ID  P +        P A TCDR++ LP Y + E     L I LELG LGY  +
Sbjct:  825 VELQPNGFATPVTNQNKAAFVRLLAERHACG-CPVALAAVRKGFYHVLPPTELAVLRSTELASLVAGPE-IIDLAQLQASVAYGRLASP---KHPTIVAFWAVVHGLLPGDVEKLLLFWSGSGRPPPFGFAPEHADQV-AWSIDVEPFSGHDQQAPLPRAQTCDRKLVLPAYPTAEVLATKLLIALELGALGYDRI 1014
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BLAST of mRNA_E-siliculosus-1a_F_contig1353.2111.1 vs. uniprot
Match: C1E8F9_MICCC (HECT-type E3 ubiquitin transferase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E8F9_MICCC)

HSP 1 Score: 113 bits (283), Expect = 3.580e-25
Identity = 66/193 (34.20%), Postives = 106/193 (54.92%), Query Frame = 3 
Query:    6 TDVPLLAGGENKRVTDKNKQEFVHLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFED-DALNEDHRWAIDK--GPAADVCPTASTCDRRMSLPQYSSKEAAFKFLTITLELGCLGY 575
            T V L+  G +  VTD NK E+V+L    R     ++ +AA   G  D++P  ++SIL P E+  ++SG   E+++ +L+ N  Y     G+  S   VRWFWE   +L+E DR +LL+F +G+S+VP  GF+    ++   R+ I K  G    +C +A TC  ++ LP+Y++KE     L   +  G  G+
Sbjct: 4121 TVVDLIPDGRDVSVTDDNKLEYVNLVAAHRMTNAIKEQIAAFTEGFNDIVPHEIISILNPSELELLISGTP-EIDIDDLKNNTEYT----GYTTSAPQVRWFWEVVKDLSEEDRARLLMFVTGTSKVPLDGFKALQGISGPQRFQIHKAYGGGQRLC-SAHTCFNQLDLPEYNTKEELKDRLLFAIREGSEGF 4307
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2111.1 vs. uniprot
Match: A0A7S0IHF9_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IHF9_MICPS)

HSP 1 Score: 112 bits (279), Expect = 1.100e-24
Identity = 65/193 (33.68%), Postives = 105/193 (54.40%), Query Frame = 3 
Query:    6 TDVPLLAGGENKRVTDKNKQEFVHLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFED-DALNEDHRWAIDK--GPAADVCPTASTCDRRMSLPQYSSKEAAFKFLTITLELGCLGY 575
            T V L+  G +  V D NK E+V+L    R     ++ +AA   G  D++P  ++SIL P E+  ++SG   E+++ +L+ N  Y     G+  S   VRWFWE   +L+E DR +LL+F +G+S+VP  GF+    ++   R+ I K  G    +C +A TC  ++ LP+Y++KE     L   +  G  G+
Sbjct: 1005 TVVDLIPDGRDVSVNDDNKLEYVNLVAAHRMTNAIKEQIAAFTEGFNDIVPHEIISILNPSELELLISGTP-EIDIDDLKNNTEYT----GYTTSAPQVRWFWEVVKDLSEEDRARLLMFVTGTSKVPLDGFKALQGISGPQRFQIHKSYGSGQRLC-SAHTCFNQLDLPEYNTKEELKDRLLFAIREGSEGF 1191
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2111.1 vs. uniprot
Match: A0A7S0X721_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X721_9CHLO)

HSP 1 Score: 109 bits (273), Expect = 2.390e-24
Identity = 64/191 (33.51%), Postives = 106/191 (55.50%), Query Frame = 3 
Query:   12 VPLLAGGENKRVTDKNKQEFVHLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFED-DALNEDHRWAIDK--GPAADVCPTASTCDRRMSLPQYSSKEAAFKFLTITLELGCLGY 575
            V L+ GG    VTD NK E+V+L T  R     ++ +A+   G  D++P +++S+L P E+  ++SG   ++++ +LR N  Y     G+  S   VRWFW+   EL + D  +LL+F +G+S+VP  GF+    ++   R+ I K  G    +C +A TC  ++ LP+Y+SKE   + L   +  G  G+
Sbjct:  260 VDLVPGGRGVAVTDDNKLEYVNLVTAHRMTTSIKEQIASFTEGFNDIVPHDVVSLLNPSELELLISGTP-DIDVDDLRANTEYT----GYSPSTPQVRWFWQVVQELKKEDCARLLMFITGTSKVPLDGFKALQGISGPQRFQIHKAYGGGRRLC-SAHTCFNQLDLPEYASKEELQERLLFAIREGSEGF 444
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2111.1 vs. uniprot
Match: A0A7S2RXL3_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXL3_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.410e-24
Identity = 70/200 (35.00%), Postives = 102/200 (51.00%), Query Frame = 3 
Query:    3 VTDVPLLAGGENKRVTDKNKQEFVHLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSVRWFWEWA-NELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHRWAIDKGPAA--------DVCPTASTCDRRMSLPQYSSKEAAFKFLTITLELGCLGY 575
            +++V L+  G +  V   N   +  LA RRR L G +  +  +R+G+  VIP +LLSI    E++ + +G    V++   R    Y   D  +   H +++ FW    ++LTE  RRKLLLFWSG S    FGF    L  D  W I++            D CP A TCDR + LP+Y ++ A  K L I +E G +GY
Sbjct:  103 LSEVDLVPRGRDLEVHSGNIHAYAFLACRRRLLRGTDDRLQVMRTGLMSVIPNSLLSIFDASELSHVTAGSLS-VDVRLWREGTVY---DRPYHDKHPTIQHFWHVVQHDLTEPQRRKLLLFWSGISVPSSFGFTTSDLAGDEPWRIERAFVPYHASSFRDDWCPEAVTCDRILRLPEYHTQGALRKCLLIAIEHGGVGY 298
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2111.1 vs. uniprot
Match: A0A7S0SGX1_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGX1_9CHLO)

HSP 1 Score: 109 bits (273), Expect = 6.500e-24
Identity = 64/191 (33.51%), Postives = 106/191 (55.50%), Query Frame = 3 
Query:   12 VPLLAGGENKRVTDKNKQEFVHLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFED-DALNEDHRWAIDK--GPAADVCPTASTCDRRMSLPQYSSKEAAFKFLTITLELGCLGY 575
            V L+ GG    VTD NK E+V+L T  R     ++ +A+   G  D++P +++S+L P E+  ++SG   ++++ +LR N  Y     G+  S   VRWFW+   EL + D  +LL+F +G+S+VP  GF+    ++   R+ I K  G    +C +A TC  ++ LP+Y+SKE   + L   +  G  G+
Sbjct:  653 VDLVPGGRGVAVTDDNKLEYVNLVTAHRMTTSIKEQIASFTEGFNDIVPHDVVSLLNPSELELLISGTP-DIDVDDLRANTEYT----GYSPSTPQVRWFWQVVQELKKEDCARLLMFITGTSKVPLDGFKALQGISGPQRFQIHKAYGGGRRLC-SAHTCFNQLDLPEYASKEELQERLLFAIREGSEGF 837
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2111.1 vs. uniprot
Match: C1MZR7_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MZR7_MICPC)

HSP 1 Score: 107 bits (266), Expect = 7.280e-24
Identity = 61/191 (31.94%), Postives = 105/191 (54.97%), Query Frame = 3 
Query:   12 VPLLAGGENKRVTDKNKQEFVHLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFED-DALNEDHRWAIDK--GPAADVCPTASTCDRRMSLPQYSSKEAAFKFLTITLELGCLGY 575
            V L+  G N  VTD+NK E+V+L T  +     +  + A   G  D++P ++L+IL P E+  ++SG   E+++ +LR    Y     G+  +   VRWFW+   +L + DR +LL+F +G+S+VP  GF+    ++   R+ I +  G    +C +A TC  ++ LP+Y++KE   + L   +  G  G+
Sbjct:  161 VDLVPDGANVPVTDENKLEYVNLVTAHKMTNAIKDQIGAFTEGFNDIVPHDVLAILNPSELELLISGTP-EIDIEDLRAQTEYT----GYTPASPQVRWFWDVVRDLNDEDRARLLMFCTGTSKVPLDGFKALQGISGPQRFQIHRAYGGGQRLC-SAHTCFNQLDLPEYANKEELQERLLFAIREGSEGF 345
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX10_9PHAE1.510e-11994.33HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LKA6_ECTSI3.550e-10097.50HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3UXC4_HETAK1.610e-2740.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1V9ZEA6_9STRA9.190e-2638.27Hect domain-containing protein n=1 Tax=Achlya hypo... [more]
C1E8F9_MICCC3.580e-2534.20HECT-type E3 ubiquitin transferase n=1 Tax=Micromo... [more]
A0A7S0IHF9_MICPS1.100e-2433.68Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S0X721_9CHLO2.390e-2433.51Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A7S2RXL3_9STRA2.410e-2435.00HECT-type E3 ubiquitin transferase n=1 Tax=Rhizoch... [more]
A0A7S0SGX1_9CHLO6.500e-2433.51Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
C1MZR7_MICPC7.280e-2431.94Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1353contigE-siliculosus-1a_F_contig1353:29422..33632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size447
Model size683
Exons5
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC2.3.2.26
EggNOG OGsCOG5021@1,KOG0939@2759
EggNOG free text desc.ubiquitin protein ligase activity
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016032,GO:0016567,GO:0016740,GO:0019058,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030163,GO:0030260,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044409,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046718,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051603,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0055085,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
KEGG Pathwayko04120,map04120
KEGG koko:K10592
Seed eggNOG ortholog2880.D8LKA6
Seed ortholog evalue1.2e-60
Seed ortholog score239.2
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.103946-UTR-E-siliculosus-1a_F_contig1353:29421..295171622927869.103946-UTR-E-siliculosus-1a_F_contig1353:29421..29517Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1353 29422..29517 -
1696318716.3205476-UTR-E-siliculosus-1a_F_contig1353:29421..295171696318716.3205476-UTR-E-siliculosus-1a_F_contig1353:29421..29517Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1353 29422..29517 -
1622927869.1998165-UTR-E-siliculosus-1a_F_contig1353:33492..336321622927869.1998165-UTR-E-siliculosus-1a_F_contig1353:33492..33632Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1353 33493..33632 -
1696318716.3815782-UTR-E-siliculosus-1a_F_contig1353:33492..336321696318716.3815782-UTR-E-siliculosus-1a_F_contig1353:33492..33632Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1353 33493..33632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.1196172-CDS-E-siliculosus-1a_F_contig1353:29517..296201622927869.1196172-CDS-E-siliculosus-1a_F_contig1353:29517..29620Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1353 29518..29620 -
1696318716.3329885-CDS-E-siliculosus-1a_F_contig1353:29517..296201696318716.3329885-CDS-E-siliculosus-1a_F_contig1353:29517..29620Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1353 29518..29620 -
1622927869.1341424-CDS-E-siliculosus-1a_F_contig1353:30657..307391622927869.1341424-CDS-E-siliculosus-1a_F_contig1353:30657..30739Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1353 30658..30739 -
1696318716.3419101-CDS-E-siliculosus-1a_F_contig1353:30657..307391696318716.3419101-CDS-E-siliculosus-1a_F_contig1353:30657..30739Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1353 30658..30739 -
1622927869.1502717-CDS-E-siliculosus-1a_F_contig1353:31199..313451622927869.1502717-CDS-E-siliculosus-1a_F_contig1353:31199..31345Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1353 31200..31345 -
1696318716.3593645-CDS-E-siliculosus-1a_F_contig1353:31199..313451696318716.3593645-CDS-E-siliculosus-1a_F_contig1353:31199..31345Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1353 31200..31345 -
1622927869.1655588-CDS-E-siliculosus-1a_F_contig1353:31829..318941622927869.1655588-CDS-E-siliculosus-1a_F_contig1353:31829..31894Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1353 31830..31894 -
1696318716.3667922-CDS-E-siliculosus-1a_F_contig1353:31829..318941696318716.3667922-CDS-E-siliculosus-1a_F_contig1353:31829..31894Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1353 31830..31894 -
1622927869.1807063-CDS-E-siliculosus-1a_F_contig1353:33441..334921622927869.1807063-CDS-E-siliculosus-1a_F_contig1353:33441..33492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1353 33442..33492 -
1696318716.3740048-CDS-E-siliculosus-1a_F_contig1353:33441..334921696318716.3740048-CDS-E-siliculosus-1a_F_contig1353:33441..33492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1353 33442..33492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1353.2111.1prot_E-siliculosus-1a_F_contig1353.2111.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1353 29518..33492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1353.2111.1

>prot_E-siliculosus-1a_F_contig1353.2111.1 ID=prot_E-siliculosus-1a_F_contig1353.2111.1|Name=mRNA_E-siliculosus-1a_F_contig1353.2111.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=149bp
MTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCS
HKSVRWFWEWANELTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHRWAI
DKGPAADVCPTASTCDRRMSLPQYSSKEAAFKFLTITLELGCLGYTTV*
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mRNA from alignment at E-siliculosus-1a_F_contig1353:29422..33632-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1353.2111.1 ID=mRNA_E-siliculosus-1a_F_contig1353.2111.1|Name=mRNA_E-siliculosus-1a_F_contig1353.2111.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4211bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1353:29422..33632- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGTCACGGACGTCCCTCTGCTGGCGGGCGGCGAGAACAAGCGCGTCACC
GACAAGAACAAGCAGGAGTTCGTCCATCTGGCGACGAGGAGGCGTGCTCT
GGGAGGGGCGGAGAAGGCCGTCGCGGCCCTGCGGTCGGGCATGACCGACG
TGATCCCCAAGAACCTTCTTTCGATCCTTCTGCCCCCCGAGGTTTGTGCT
CGTGGTGGCGGTGTGTGTGTGTGTCTTTGTTGTTGGCATCGACCGCGCTA
ACCGGCTGACCAATGAAAATACGTCAGTCGTTAGCGCGGTTGAAAACACA
AAGCACTTCTATCTGCCATGAGCTGGCACCCCGTGAGGGGGCAGCATGTG
GGAGGCTAAACTATCCTTCGGATCAAAGACAGAAAAGTGTGTGTGTGTGT
GTGTGTGTGTGTTCATGCCAAACGCATACCGTAGTCGTTAGACCGTCGAT
GTCGCATGCCACCGGGACGGAGCGACACGCCGGGTTTTCGCCGGCCCAGC
CTACAAGGTGGTAGCAGTGAGGAGGGGTACGTGAAGAAGACATGCGGCCA
CCGTATATGACACAAGATAACACACCCCCTTGACCATTTTTCAAAGCTCG
ATTTCTCAACAGCAGGAAGACTCACAGCGCCGAAAACGGCGGCGTTGGAA
CCGTCTCGTTGAGAGCTTTTCGAAAATGTATCATTTCGTTTATGTATCCT
CTTCGTCGTCGAGTAATCGAGCTTTGAAAGTCGGGCCAGGGGGTGTGTTA
TCTTGTGTCATATACGGTATCTCGTTCCTCTCGCTCCGTTTGATAGCACC
CATGTTATTTTTGCGCGTCGTGCGTCTTCGTTTGTTTTTTTTTCCGGTTC
GCGGCGCTTTTTTTGGCTGCTCGCGGCTCCCCTGCTCCCCCCTCCGTTTG
TTGTCACTCACGTGCGTGTGTGTGTTTATTATTAGCATCGACCGCGCTAA
CCGGCTGACCAATGAAAAGACGTCAGTCGTAGTGCGGTTGAAAACACAAA
ACACTTCTATCTGCCATGAACTGGGACCCCGTGAGGGGGCAGCATGGGGG
AGGGCAAACTATCCTTCGGATCAAAGACAGAAACAGCAGCAACAGAAGAA
AACTGGACGCGTCTACCAATGCTATTACCTCGTACTCTAGTTCGTTTAGG
AGTACTTTCACTGTTGTCCTCCTTGTTTTCGCTACCATCATTCTGATCTT
CATTTTGACAAGAATCTCTAGGCATTTCTTCCCTAGCCCTACGTTTTTTA
TTTTGGGGAAGGTCATCTGGCTCAAACCCTTTGCTCTCTTCAACGTGTGT
GTGTGTGTGCGTCGTTTGCAATTTGTACGTTGGCGTTCGACTCGCTCTGT
CTGTTGTCTGTCTTACGTCATTAAGGGTGTGGTTGTTTCAACCTCGCACC
TCTTGTCCAGGCTACCGCACTGCTTTTGTGTGTCGTGGTATTCCATGCTC
TTTGTTTGTCCACGATACAACTCTGGTGAAAACATTTTCGGCGACGCTTC
CTGTATTAGACTCCCAAACACCGTCGGCCTTACTTTTAAGCGCTCAATCG
TTCGCCCATTTTTCTCTGCTCGACTCGTTTTTTCTCATGATTCACAATCG
CATATTACCCATGTGTGCGTTACGGGTTCTGTTTTGTTTTTTTGTATCGC
TTCTGTCTACATCCGTACTTTCATGGTGTTTTTTCTTTACGTTTCCGTTT
ACCTACGTCGTACGTACGTGTTGTGTGTTGGCCTGCAGGTGGCGAGCATC
GTGTCAGGCCCCCAGGGAGAGGTGAACCTGTCGGAACTCCGGACCAACGT
CTGGTAAGAGAAAAGAAGAGATGGTACTCGTAGGAGGTGGAATCTAAGCC
CGCAGAGCATCGCTGAACACGATACTGGGGCGGGTGTCAAGAACATTGTC
ACGCTACGCTATTGTACATTATTGGTGTCAAGAACCTTGTCACGCTACAT
TATTGTACATTCTTGATACTATCAATACATATGCGACGGACCATGAGGCG
CCAATGGATTGTCCATGGACCGTCATTGACATCCCGTGGGAGGTGTTGTT
GGACACGCTTGGACTGCCCGCGGCACCCGTGGGTCAACGAAGGGGCATAC
CTAGCCTGCTACGGCCCATGGGCCGTCCATTGGATACCGCATGCACGCAA
GCCCGGACACGTTCAAGTAGAGCACCAACATGAGCTGTTCACCACTAGGT
TGTATTTGGCAGCACACTGGAGGGGGAAGGGTGAACTCTACCAAATACCT
GCAGGCAGCTATTTTCATTTTTTTTTTTCTCTTCCAGGTACGTGGAAAGC
GACGGGGGGTTCGGCTGCAGCCACAAGTCGGTTCGTTGGTTCTGGGAGTG
GGCCAATGAGCTCACGGAGAGCGATCGTCGAAAGCTGCTGCTGTTCTGGT
CAGGCAGCAGCCGGGTGCCGCCCTTCGGGTTCGGTGAGTTAAGCTCGGTC
TGCCTTATGTTTTTTCCGTTTCCCTTCCTTCGCTCCCTAATAATTCATGT
TCCTTTTTTTTTTTGTATTTTTTCCGCAAGTAGCAGCTTCTTTTCTTTTT
CTTTGCCTTGTTTTTTGTGTGCGGTTCTTGGGCCCGAGGGCTTGCGTGTC
CCAACCGGAATTGCACTGCTTGCGAACGGCTTGCGAAGGTGCGCTGCTAC
TACCTGTCTTGCCTGTTGAAGTATGAGAACGAGTTTTCGCCCTACATCAG
CACTACTGCTGTGAGTATTTGTTTTCAATGTCTCTTGACACACGATATGT
TCCTCGATCACTAACACAACTAATTTCTCTGCTGCCTGCTTGTTGCCACC
ATCATGATGACATGTTGACTTATTTTGTCCGGCGGATTGGATGGGATGGG
ATGGAACGGGATGGGATTGGATGGAAAAAAATATGTGCATCAGAGGACGA
CGCCCTGAACGAGGATCACCGTTGGGCCATCGACAAGGGGCCTGCCGCGG
ACGTGTGTCCCACGGCCTCCACGTGGTAAGGGCACCTGTTGCTATATATT
CCTACCGTGAGAGGCGAATACCGTAAGAGGCGAAGAGATGACACCCCCTC
TAGATTGGTGTTCAAAGCTCGATTGCTCCAACAACAAGAAATTGTGCCAA
CAAGAATGGTGGTCTTGGAAAACATCTCGTGGAGGGCTTCCCGCAACATT
ATCGGGCTCTTACCGCACTCCGTCGGTTGTGGAGCAATCGAATCGAGCTT
TCAAAATCGGTCTATTTAGGGGGAGGGCCATCTCTCCGCCTCTTACGGAA
TACCACCATACGGTATACGGTATACGGTACAGACAATCTTGGTTGTGGAG
TAATCGAGCTTTGAAAATCGGTCTAGGGGGAGAGCCATCTCTCCGTCTCT
TACGGTATCATCAAGTGCAGCAGTAGGCTAGCCGGGGTGCTGGGACGTGT
ACAACGATCGCGCACGCCAGGAGGATGGTTGGACCGGATTCGTGCCAGAA
TTCTGCCCCGGTTATTGTTTGAGATTTTTGTTTTGGTAGATGCCTCAAGT
TGGCCGCACCCCACCACGATTGCAGTGTCATGGTAGCGTTGTACTTTTGG
AATAGTTAATCATCTGCGGCGTCGAAAGTAGAGGTAAGAAATATAGAGGG
GTTTTACCTGGGGACATGAACCAGGCATGCTCAGCGAAAACCCAGCAATA
GCGACGTCCGAGCTCAGGTCTCGTGACTCTGGTATTTGGAAATGATACGA
CTGGGGGGGACTCTGTCCGATTCGACGTTCGATATTTTGTCGCTGTGTCT
CTTGCACCACATGCTTGCATTGTGCGCACAGCCGCTGCTGATGGTAGCGA
ATGCCTTCTACAATGCGTCGTTTGCGTCCCTGCCCTGATTCGTCCGCCCT
CGACTCGACTTCAACGAAATGACCCCAAACTGCTGGTGCTCCCCCTTTCC
TCTCCTGCTGCCTTTCTGTCTCGTCGCTCGTGTCGCCGCCACCGCCACCG
TTGCGCCGCCGGGAACACGCACAACACATCATTATCAATTGCACCGCCAC
AACAACCTACAGCGATCGGAGGATGTCCCTCCCACAGTACTCCAGCAAAG
AGGCTGCTTTCAAGTTCCTGACCATCACTCTTGAGCTCGGCTGCCTGGGA
TACACGACCGTGTGAGGATGGTTGTTTAGAGCCAGTTGGTGGGTTGTTTT
GTGGCGTCGGACGTCGTCATTAAAGTGCTGCAGGGCTATCGTGGCCCCTA
CGCCCTCACGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1353:29422..33632-

>mRNA_E-siliculosus-1a_F_contig1353.2111.1 ID=mRNA_E-siliculosus-1a_F_contig1353.2111.1|Name=mRNA_E-siliculosus-1a_F_contig1353.2111.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1353:29422..33632- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCGACGTGATCCCCAAGAACCTTCTTTCGATCCTTCTGCCCCCCGA
GATGACCGACGTGATCCCCAAGAACCTTCTTTCGATCCTTCTGCCCCCCG
AGGTGGCGAGCATCGTGTCAGGCCCCCAGGGAGAGGTGAACCTGTCGGAA
CTCCGGACCAACGTCTGGTGGCGAGCATCGTGTCAGGCCCCCAGGGAGAG
GTGAACCTGTCGGAACTCCGGACCAACGTCTGGTACGTGGAAAGCGACGG
GGGGTTCGGCTGCAGCCACAAGTCGGTTCGTTGGTTCTGGGAGTGGGCCA
ATGAGCTCACGGAGAGCGATCGTCGAAAGCTGCTGCTGTTCTGGTCAGGC
AGCAGCCGGGTGCCGCCCTTCGGGTTCGGTACGTGGAAAGCGACGGGGGG
TTCGGCTGCAGCCACAAGTCGGTTCGTTGGTTCTGGGAGTGGGCCAATGA
GCTCACGGAGAGCGATCGTCGAAAGCTGCTGCTGTTCTGGTCAGGCAGCA
GCCGGGTGCCGCCCTTCGGGTTCGAGGACGACGCCCTGAACGAGGATCAC
CGTTGGGCCATCGACAAGGGGCCTGCCGCGGACGTGTGTCCCACGGCCTC
CACGTGAGGACGACGCCCTGAACGAGGATCACCGTTGGGCCATCGACAAG
GGGCCTGCCGCGGACGTGTGTCCCACGGCCTCCACGTGCGATCGGAGGAT
GTCCCTCCCACAGTACTCCAGCAAAGAGGCTGCTTTCAAGTTCCTGACCA
TCACTCTTGAGCTCGGCTGCCTGGGATACACGACCGTGTGACGATCGGAG
GATGTCCCTCCCACAGTACTCCAGCAAAGAGGCTGCTTTCAAGTTCCTGA
CCATCACTCTTGAGCTCGGCTGCCTGGGATACACGACCGTGTGA
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