mRNA_E-siliculosus-1a_F_contig1353.2109.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2109.1 vs. uniprot
Match: D8LKA2_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA2_ECTSI) HSP 1 Score: 629 bits (1621), Expect = 5.340e-219 Identity = 482/519 (92.87%), Postives = 487/519 (93.83%), Query Frame = 3
Query: 45 MAWGAPRGVDDLVAKLNDNSTASTMCILSTRKFGPSEAAALSAALSGNTSLTELLASGHPLEVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSIASGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSLSSTLLRLDLSGNQLNAAAAEALGRSLSTHRPTAIGNQAGTSAVGXXXXXXXXXXXXXXXXXXLEFLDVSRNPLGDEGGATLFRALATSPTLTGLVLAEAKLGRLAAAALAESLVPPPASPLPGGGGPSGPAETDSG--AXXXXXXXXXXPANGGGLQKLQALDVSKNELGTVGAAEVAGALSRGGAPRLETLSMAYNDVGDDGAAALGKAAXXXXXXXXXXXXXXXXXXXXXXXXXXGLREAKLFHNACKDEGVPLVLEALLAGGTLQTLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNDERAEEAVRRSQGSNPALDIAFRRGGEAMEGSGAPPGVGIGGGTAGGPGAAASWQTQ 1595
MAWGAPRGVDDL+AKLNDNSTASTMCILSTRKFGPSEAAA SAALSGNTSLTELLASGHPLEVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSIASGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSL+STLLRLD+SGNQLNAAAAEALGR+L THRP AIGNQ GTSAVG XXXXXXXXXXXXXXXLEFLDVSRNPLGDEGGA LFRALATSPTLTGLVLAEAKLG LAAAALAE+LVPPPASPLPGGGGPSGPAE DSG XXXXXXX NGGGLQKLQALDVSKNELGT G AEVAGALSRGGAPRLETLSMAYNDVGDDGAAA XXXXXXXXXXXXXXXXXXXXXXXXXX LREAKLFHNACKDEGVPLVLEALLAGGTLQTLD XXXXXXXXXXXXXXXXXXXXXXXXXXSNDERAEEAVRRSQGSNPALDIAFRRGGEAMEGSGAPPGVGIGGGTAGGPGAAASWQTQ
Sbjct: 1 MAWGAPRGVDDLIAKLNDNSTASTMCILSTRKFGPSEAAAFSAALSGNTSLTELLASGHPLEVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSIASGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSLNSTLLRLDVSGNQLNAAAAEALGRALCTHRPAAIGNQTGTSAVGGSDXXXXXXXXXXXXXXXLEFLDVSRNPLGDEGGAALFRALATSPTLTGLVLAEAKLGPLAAAALAEALVPPPASPLPGGGGPSGPAEPDSGEMTPLPXXXXXXXXXNGGGLQKLQALDVSKNELGTGGGAEVAGALSRGGAPRLETLSMAYNDVGDDGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREAKLFHNACKDEGVPLVLEALLAGGTLQTLDLGANGLXXXXXXXXXXXXXXXXXXXXXXXXXXSNDERAEEAVRRSQGSNPALDIAFRRGGEAMEGSGAPPGVGIGGGTAGGPGAAASWQTQ 519
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2109.1 vs. uniprot
Match: A0A835YR55_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR55_9STRA) HSP 1 Score: 103 bits (257), Expect = 7.430e-20 Identity = 100/210 (47.62%), Postives = 125/210 (59.52%), Query Frame = 3
Query: 45 MAWGAPRGVDDLVAKLNDNSTASTMCILSTRKFGPSEAAALSAALSGNTSLTELLASGHPLEVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH-GLLVLDLEYKSIASGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGL--------------------------SLSSTLLRLDLSGNQLNAAAAEALGRSL 593
MAWGAP+GVDDL+ KL ++ +++ IL R+FG +EA +AALS N++LTEL ASGH + G XXXXXXXXXXXXXXXXXXXXXXXXX + GL+ LDLEYKS+ G+ + LL+ H L DLRLGRN++G G+ +L GL +L STL LDLSGN L +A L SL
Sbjct: 1 MAWGAPKGVDDLLVKLRTDANLTSLVILRNRRFGVTEATQFAAALSSNSTLTELFASGHAVGEEGAAAXXXXXXXXXXXXXXXXXXXXXXXXXVTALVHGGLHKNTGLVKLDLEYKSVTRGDHIGHLLQHHTALQDLRLGRNRIGNDGLIALCQGLCASTXXXXXXXXXXXXXXXXXXXXTQTLPSTLTGLDLSGNALCGSAGHTLFTSL 210
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2109.1 vs. uniprot
Match: A0A7S2SI57_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SI57_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 5.550e-12 Identity = 78/185 (42.16%), Postives = 98/185 (52.97%), Query Frame = 3
Query: 45 MAWGAPRGVDDLVAKLNDNSTASTMCILSTRKFGPSEAAALSAALSGNTSLTELLASGHPLEVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSIASG--EGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSLSSTLLRLDLSGNQLNAAAAEALGRSL 593
M WG +GVDDLV KL+ N T TM ILS R FG E A AL+ NTSL ELL SGH XXXXXXXXXXXXXXXXX L ++LEYKS+ G E + + L+ L + LGRN L + ++ LS G+ S ++ + L N L+A + +G SL
Sbjct: 1 MVWGKKQGVDDLVQKLSRNETGETMLILSNRSFGDKETIAFCKALATNTSLKELLCSGHXXXXXXXXXXXXXXXXXXXXXXXGLGNSNFGDKGVAALFANWENST-LTHIELEYKSLGQGAMEAISSALQRENALESILLGRNGLNDTHVEVLSKGIQASPSINHICLKSNVLSATGCKHVGDSL 184
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2109.1 vs. uniprot
Match: A0A3M6VKV4_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKV4_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 8.950e-9 Identity = 75/160 (46.88%), Postives = 95/160 (59.38%), Query Frame = 3
Query: 45 MAWGAPRGVDDLVAKLNDNSTASTMCILSTRKFGPSEAAALSAALSGNTSLTELLASGHPL--EVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSIASG--EGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLS 512
MAWG GVDDL+ KL + TA+++ ++STR S+ L+ ++S NT L EL SGH L + XXXXXXXXXXXXXXXXXXXXXXX GLL DLE KS+ + LL+T+ L L L RNQ+G+ GM+ L+ GLS
Sbjct: 1 MAWGKKTGVDDLLQKLVNPKTATSLYVMSTRCMSDSDFVRLAGSISSNTMLQELYVSGHELGPQSVQAFADCLAXXXXXXXXXXXXXXXXXXXXXXXCAGLARNPQSGLLNWDLELKSLGVDGVSAIAELLKTNKVLTTLTLSRNQIGDEGMEKLAKGLS 160
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2109.1 vs. uniprot
Match: M4C052_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C052_HYAAE) HSP 1 Score: 67.0 bits (162), Expect = 5.020e-8 Identity = 78/282 (27.66%), Postives = 113/282 (40.07%), Query Frame = 3
Query: 45 MAWGAPRGVDDLVAKLNDNSTASTMCILSTRKFGPSEAAALSAALSGNTSLTELLASGHPLEVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HGLLVLDLEYKS--IASGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSLSS-------TLLRLDLSGNQLNAAAAEALGRSLSTHRPTAIGNQAGTSAVGXXXXXXXXXXXXXXXXXXLEFLDVSRNPLGDEGGATLFRALATSPTLTGLVLAEAKLGRLAAAALAESLV 857
MAWG GVDDL+ KL D TA+++ ++S R S+ L+ A+S NT L EL SGH L G L V DLE+KS + + LL+T+ TL + L RN + + G++ ++ GLS + L + +SG L+ AA ++ S + L +S N LGD + F ALAT+ ++ L+L E KL AAALA + V
Sbjct: 1 MAWGKKTGVDDLLQKLADPLTATSLYVMSIRSLSDSDVVTLAKAISTNTLLRELYMSGHELGPLGLNAFADCLATNMTLQHLCLGSETLGDNAVKVLCTGLARNAQSKLRVWDLEFKSLNVDGASAIAELLKTNKTLTTITLSRNPIHDEGVEKVANGLSANPQSQVAELNLTDIGISGTGLDHLAALVASKTCS-----------------------------------VTTLQLSFNSLGD-ATSPFFDALATNTSVEKLLLKECKLTDQHAAALASASV 246
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2109.1 vs. uniprot
Match: A0A2P6VFQ9_9CHLO (Putative leucine rich repeat n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFQ9_9CHLO) HSP 1 Score: 62.8 bits (151), Expect = 1.180e-6 Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 3
Query: 45 MAWGAPRGVDDLVAKL-NDNSTASTMCILSTRKFGPSEAAALSAALSGNTSLTELLASGHPLEVA 236
MAWGA RGV+DL+ +L +D+ +++C+L R+F ++A A +AAL+ NTSL EL A+ HP+ A
Sbjct: 1 MAWGAKRGVEDLLERLRSDDPALTSLCLLRQRRFEEADAVAFAAALADNTSLRELTAAAHPVSAA 65
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2109.1 vs. uniprot
Match: A0A2R5GZM4_9STRA (NACHT, LRR and PYD domains-containing protein 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZM4_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.560e-6 Identity = 53/149 (35.57%), Postives = 65/149 (43.62%), Query Frame = 3
Query: 45 MAWGAPR-GVDDLVAKLNDNSTASTMCILSTRKFGPSEAAALSAALSGNTSLTELLASGHPLEVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSIASGEGL----RTLLETHPTLADLRLGRNQLG 476
MAWG R GVDDLVAKL N T + ++S RK S AL+ AL+ N+SL ELL SGH + L LDLE+KS+ +G G+ L + L DLRLGRN LG
Sbjct: 1 MAWGQQRRGVDDLVAKLRANETGPALLVMSMRKVDESGLCALADALAENSSLEELLCSGHSVS-EDAAKRLGQALRQNSTLKRLSVGCAQFGDAELAALLDAWENSTLEALDLEFKSLTAG-GMPHLGSVLAQPSHALQDLRLGRNDLG 147 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1353.2109.1 >prot_E-siliculosus-1a_F_contig1353.2109.1 ID=prot_E-siliculosus-1a_F_contig1353.2109.1|Name=mRNA_E-siliculosus-1a_F_contig1353.2109.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=518bp MAWGAPRGVDDLVAKLNDNSTASTMCILSTRKFGPSEAAALSAALSGNTSback to top mRNA from alignment at E-siliculosus-1a_F_contig1353:17459..21600+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1353.2109.1 ID=mRNA_E-siliculosus-1a_F_contig1353.2109.1|Name=mRNA_E-siliculosus-1a_F_contig1353.2109.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4142bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1353:17459..21600+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1353:17459..21600+ >mRNA_E-siliculosus-1a_F_contig1353.2109.1 ID=mRNA_E-siliculosus-1a_F_contig1353.2109.1|Name=mRNA_E-siliculosus-1a_F_contig1353.2109.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3108bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1353:17459..21600+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |