mRNA_E-siliculosus-1a_F_contig1352.2105.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1352.2105.1 vs. uniprot
Match: D7G874_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G874_ECTSI) HSP 1 Score: 403 bits (1035), Expect = 6.590e-134 Identity = 196/202 (97.03%), Postives = 199/202 (98.51%), Query Frame = 3
Query: 3 SAGILQPREAGARPRTRSSWATLMEGQLRTPGGHHSIVGAWVLDLSRSDTMELFLRIHGMPEKHIREHVSAETLHGGFNVIGLGEDAITIHKRTCTNCYTE-SYTLDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSANCSTAGGRDNVHMLETRNVVEGGLAHTQEIRLHNLTTGEDCVTNRVWTRVPMTEEHQAALGPL 605
SAGILQPREAGARPRTRS+WATLMEGQLRTPGGHHSIVGAWVLDLSRSDTMELFLRIHGMPEKHIREHVSAETLHGGFNV+GLGED ITIHKRTCTNCYTE SYTLDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSANCSTAGGRDNVHMLETR+VVEGGLAHTQEIRLHNLTTGEDCVTNRVW RVPMTEEHQAALGPL
Sbjct: 82 SAGILQPREAGARPRTRSAWATLMEGQLRTPGGHHSIVGAWVLDLSRSDTMELFLRIHGMPEKHIREHVSAETLHGGFNVVGLGEDTITIHKRTCTNCYTERSYTLDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSANCSTAGGRDNVHMLETRHVVEGGLAHTQEIRLHNLTTGEDCVTNRVWMRVPMTEEHQAALGPL 283
BLAST of mRNA_E-siliculosus-1a_F_contig1352.2105.1 vs. uniprot
Match: D7G875_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G875_ECTSI) HSP 1 Score: 244 bits (622), Expect = 1.680e-73 Identity = 123/189 (65.08%), Postives = 151/189 (79.89%), Query Frame = 3
Query: 96 GGHHSIVGAWVLDLSRSDTMELFLRIHGMPEKHIREHVSAETLHGGFNVIGLGEDAITIHKRTCTNCYTESYTLDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSANCST-AGGRDNVHMLETRNVVEGGLAHTQEIRLHNLTTGEDCVTNRVWTRVPMTEEHQAALGPL*MGWPTGGSSSSATVARD 659
GG +SIVGAWVLDLSRSDTME FL++ + E+ R HV AE HG FNVI L D ITIH+RTC N +TES+ LDEEKVKY+ + RTR+SE++S+P SGPTG+VRSAN + +GGRD+VHMLE+R+++EG L+HTQEIRLHNLTTGE CVTNRVWTRVPMT+EHQA +G L + SSSSA + R+
Sbjct: 7 GGLNSIVGAWVLDLSRSDTMERFLQVTRVSEQGTRAHVRAEARHGAFNVIHLEGDTITIHRRTCANNFTESFKLDEEKVKYDGIVRTRISELVSMPSSGPTGYVRSANSTAISGGRDDVHMLESRHIMEGSLSHTQEIRLHNLTTGEHCVTNRVWTRVPMTDEHQATIGLLLLAEEP--SSSSARILRE 193
BLAST of mRNA_E-siliculosus-1a_F_contig1352.2105.1 vs. uniprot
Match: A0A6H5JV86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV86_9PHAE) HSP 1 Score: 192 bits (487), Expect = 2.470e-54 Identity = 98/151 (64.90%), Postives = 120/151 (79.47%), Query Frame = 3
Query: 207 VSAETLHGGFNVIGLGEDAITIHKRTCTNCYTESYTLDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSA-NCSTAGGRDNVHMLETRNVVEGGLAHTQEIRLHNLTTGEDCVTNRVWTRVPMTEEHQAALGPL*MGWPTGGSSSSATVAR 656
V AE HG FNVI L D ITIHKRTC N +TES+ L EEKVK++ + RTR+SEV+S+P S PTG+VRSA + + +GGRD+VHMLE+R+++EGGL+HTQEIRLHNLTTGE CVTNRVWTRVPMT+EHQA +G L + SSSSA + R
Sbjct: 4 VRAEARHGAFNVIHLEGDTITIHKRTCANNFTESFKLGEEKVKHDGILRTRISEVVSMPSSRPTGYVRSARSTAVSGGRDDVHMLESRHIMEGGLSHTQEIRLHNLTTGEHCVTNRVWTRVPMTDEHQAMMGLLLLAEEP--SSSSARILR 152
BLAST of mRNA_E-siliculosus-1a_F_contig1352.2105.1 vs. uniprot
Match: D7FQR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR1_ECTSI) HSP 1 Score: 110 bits (276), Expect = 2.560e-24 Identity = 70/185 (37.84%), Postives = 102/185 (55.14%), Query Frame = 3
Query: 57 SWATLMEGQLRTPGG----HHSIVGAWVLDLSRSDTMELFLRIHGMPEKHIREHVSAETLHGGFNVIGLGEDAITIHKRTCTNCYTESYTLDEEKVKYNEVTRTRVSEVLSVPCSGPT-GFVRSANCSTAGGRDNVHMLETRNVVEGGLAHTQEIRLHNLTTGEDCVTNRVWTRVPMTEEHQAAL 596
S+A G P G ++SIVGAWVL++SRS+TME +LR + + I + AE H NV + + IHKRT N +T+ Y LD+EK+ ++S+P G G V + + TA G+ +H++ETR +++ G H QE+ L NLTTG CVT R W RV +T Q ++
Sbjct: 2 SYAVSRGGGTGGPNGLLPEYNSIVGAWVLEVSRSETMEGYLRCMNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKITDGRSGPKHC--MVSLPNPGCLDGLVLTTSMPTAQGQ--MHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVTPVDQESV 182
BLAST of mRNA_E-siliculosus-1a_F_contig1352.2105.1 vs. uniprot
Match: A0A6H5JWZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ5_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 5.460e-13 Identity = 49/135 (36.30%), Postives = 69/135 (51.11%), Query Frame = 3
Query: 195 IREHVSAETLHGGFNVIGLGEDAITIHKRTCTNCYTESYTLDEEKVKYNEVTRTRVSEVLSVP-CSGPTGFVRSANCSTAGGRDNVHMLETRNVVEGGLAHTQEIRLHNLTTGEDCVTNRVWTRVPMTEEHQAAL 596
I + AE H NV + + IHKRT N +T+ Y LD+EK+ L P C G V + + TA G+ +H++ETR +++ G H QE+ L NLTTG CVT R W RV +T Q ++
Sbjct: 8 IEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKITDGRSGPKHCMVSLRNPGCLD--GLVLTTSMPTAQGQ--MHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVTPLDQESV 138 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1352.2105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1352.2105.1 >prot_E-siliculosus-1a_F_contig1352.2105.1 ID=prot_E-siliculosus-1a_F_contig1352.2105.1|Name=mRNA_E-siliculosus-1a_F_contig1352.2105.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=179bp MEGQLRTPGGHHSIVGAWVLDLSRSDTMELFLRIHGMPEKHIREHVSAETback to top mRNA from alignment at E-siliculosus-1a_F_contig1352:24465..29638- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1352.2105.1 ID=mRNA_E-siliculosus-1a_F_contig1352.2105.1|Name=mRNA_E-siliculosus-1a_F_contig1352.2105.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5174bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1352:24465..29638- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1352:24465..29638- >mRNA_E-siliculosus-1a_F_contig1352.2105.1 ID=mRNA_E-siliculosus-1a_F_contig1352.2105.1|Name=mRNA_E-siliculosus-1a_F_contig1352.2105.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1074bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1352:24465..29638- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |