mRNA_E-siliculosus-1a_F_contig13507.2099.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13507.2099.1
Unique NamemRNA_E-siliculosus-1a_F_contig13507.2099.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2099.1 vs. uniprot
Match: A0A117KHS9_9GAMM (DctM domain-containing protein n=6 Tax=root TaxID=1 RepID=A0A117KHS9_9GAMM)

HSP 1 Score: 635 bits (1638), Expect = 6.880e-221
Identity = 327/370 (88.38%), Postives = 352/370 (95.14%), Query Frame = 1
Query:    4 TADVKEGFKDLWEGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSGGNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIVVLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLINVTVMQGIVVFIVATVAMLIFAAGTQGYMLVRSRWYESLLLLLVAFALFRPGFWMDRIHDPYESVPPAQFVEALGSVADGSNLRVQIAGENDYGDPMTTYILVPVPRGDTAEERMEALGMELWVDGDEATVDFVEFGSQAADLGFDFDQEILEVLAPVDRWTKEWIWIPALLVFAFVVLMQRRRRNNLPSDGAAVTS 1113
            +ADVKEGFKDLW+GLVAGARNMIGIGIATA AGI+VGAVSQTGVGLVLADVVEILSGGNLM+ILLLTALLSLILGMGLPTTANYIVVSALMAPVIV+LGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLI+VT MQGI+VFIVAT AMLIFAAGTQGYM+ R+RWYESLLLLLVAF LFRPGFWMDRIHDPYES+PPA+FVEALGSV DGSNLRVQIAGE+DYGDPMTTYILVPVPRGD+  ERMEALGMELW DGD+  VDF+EFGSQAA+LGFDFDQEI+EVLAPVDRWTKEW+W+PAL++F FVVL+QRRRR    +D +A T+
Sbjct:  498 SADVKEGFKDLWDGLVAGARNMIGIGIATATAGIVVGAVSQTGVGLVLADVVEILSGGNLMMILLLTALLSLILGMGLPTTANYIVVSALMAPVIVMLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLIDVTFMQGIIVFIVATGAMLIFAAGTQGYMIARNRWYESLLLLLVAFTLFRPGFWMDRIHDPYESIPPAEFVEALGSVDDGSNLRVQIAGEDDYGDPMTTYILVPVPRGDSGAERMEALGMELWEDGDQTLVDFIEFGSQAAELGFDFDQEIIEVLAPVDRWTKEWMWLPALVIFGFVVLLQRRRREKQSADESATTA 867          
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2099.1 vs. uniprot
Match: A0A8H9MAH6_9GAMM (C4-dicarboxylate ABC transporter n=16 Tax=Halomonadaceae TaxID=28256 RepID=A0A8H9MAH6_9GAMM)

HSP 1 Score: 624 bits (1608), Expect = 3.030e-216
Identity = 322/370 (87.03%), Postives = 347/370 (93.78%), Query Frame = 1
Query:    1 LTADVKEGFKDLWEGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSGGNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIVVLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLINVTVMQGIVVFIVATVAMLIFAAGTQGYMLVRSRWYESLLLLLVAFALFRPGFWMDRIHDPYESVPPAQFVEALGSVADGSNLRVQIAGENDYGDPMTTYILVPVPRGDTAEERMEALGMELWVDGDEATVDFVEFGSQAADLGFDFDQEILEVLAPVDRWTKEWIWIPALLVFAFVVLMQRRRRNNLPSDGAAVT 1110
            + AD+KEGF DLW+GLVAGARNMIGIGIATA AGI+VGAVSQTGVGLVLADVVE+LSGGNLM+ILLLTALLSLILGMGLPTTANYIVVSALMAPVIV+LGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLI+V+ +QGIVVFI+AT+AMLIFAAGTQGYMLVRSRWYESLLLLLVAF LFRPG+WMDRIHDPYESVPPAQF EALG V DGSNLRVQIAGE+++GDPMTTYILVPVPRGD+AEERME LGMELWVDGD+ATVDFV+FG  A DLGFDFDQEILEVLAPVDRW KEW+WIP  ++FAFVV++QRRRR    +  A  T
Sbjct:  506 MAADIKEGFLDLWDGLVAGARNMIGIGIATATAGIVVGAVSQTGVGLVLADVVEVLSGGNLMMILLLTALLSLILGMGLPTTANYIVVSALMAPVIVLLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLIDVSFLQGIVVFIIATIAMLIFAAGTQGYMLVRSRWYESLLLLLVAFTLFRPGYWMDRIHDPYESVPPAQFAEALGQVEDGSNLRVQIAGEDNFGDPMTTYILVPVPRGDSAEERMERLGMELWVDGDQATVDFVQFGGLAQDLGFDFDQEILEVLAPVDRWAKEWMWIPGFVLFAFVVMLQRRRREKERTAMATTT 875          
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2099.1 vs. uniprot
Match: A0A3B7L743_9GAMM (TRAP transporter fused permease subunit n=12 Tax=Halomonas TaxID=2745 RepID=A0A3B7L743_9GAMM)

HSP 1 Score: 623 bits (1607), Expect = 3.140e-216
Identity = 324/371 (87.33%), Postives = 348/371 (93.80%), Query Frame = 1
Query:    1 LTADVKEGFKDLWEGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSGGNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIVVLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLINVTVMQGIVVFIVATVAMLIFAAGTQGYMLVRSRWYESLLLLLVAFALFRPGFWMDRIHDPYESVPPAQFVEALGSVADGSNLRVQIAGENDYGDPMTTYILVPVPRGDTAEERMEALGMELWVDGDEATVDFVEFGSQAADLGFDFDQEILEVLAPVDRWTKEWIWIPALLVFAFVVLMQRRRRNNLPSDGAAVTS 1113
            + AD+KEGFKDLW+GLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILS GNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIV+LGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLI+V  +QGIV+FI+AT+AMLIFAAGTQGYM+VR+RWYES+LLLLVAF LFRPGFWMD++HDPYESVPP+QFV+ALG V DGSNLRVQIAGE+ +GDPMTTY+LVPVPRGDT EERME LGMELWVDGD+ATVDFVEFGS AADLGFDFDQEILEVLAPVDRW KEW+WIP  LVF  VV++QRRRR   P  G A T+
Sbjct:  497 VVADIKEGFKDLWDGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSMGNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIVMLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLIDVGWLQGIVIFIIATIAMLIFAAGTQGYMIVRNRWYESVLLLLVAFTLFRPGFWMDKVHDPYESVPPSQFVQALGDVEDGSNLRVQIAGEDAFGDPMTTYVLVPVPRGDTGEERMERLGMELWVDGDQATVDFVEFGSLAADLGFDFDQEILEVLAPVDRWAKEWMWIPGFLVFGLVVMLQRRRRE--PGPGQAATA 865          
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2099.1 vs. uniprot
Match: A0A651E0G6_HALSX (TRAP transporter fused permease subunit n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A651E0G6_HALSX)

HSP 1 Score: 622 bits (1605), Expect = 6.710e-216
Identity = 320/365 (87.67%), Postives = 346/365 (94.79%), Query Frame = 1
Query:   10 DVKEGFKDLWEGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSGGNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIVVLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLINVTVMQGIVVFIVATVAMLIFAAGTQGYMLVRSRWYESLLLLLVAFALFRPGFWMDRIHDPYESVPPAQFVEALGSVADGSNLRVQIAGENDYGDPMTTYILVPVPRGDTAEERMEALGMELWVDGDEATVDFVEFGSQAADLGFDFDQEILEVLAPVDRWTKEWIWIPALLVFAFVVLMQRRRRNNLPSDGAA 1104
            DVKEGFKDLW+GLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSGGNLM+ILLLTALLSLILGMGLPTTANYIVVSALMAPVIV+LGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLINV+ +QGIVVFI+AT+AMLIFAAGTQGYM+VR+RWYESLLLLLVAF LFRPGFWMD+IHDPYESVPPA+FV+ALG V DGSNLRV+IAGE+D+GDPMTTYILVPVPRGD+ E RME LGMELW+DG++ATVDFVEFG  A DLGFDFDQEI+EVLAPVDRW KEW+WIP  ++FA +V++QRRRR   PSD  A
Sbjct:  500 DVKEGFKDLWDGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSGGNLMMILLLTALLSLILGMGLPTTANYIVVSALMAPVIVMLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLINVSFVQGIVVFIIATIAMLIFAAGTQGYMVVRNRWYESLLLLLVAFTLFRPGFWMDKIHDPYESVPPAEFVQALGQVEDGSNLRVRIAGEDDFGDPMTTYILVPVPRGDSGEARMEGLGMELWIDGEQATVDFVEFGGLAQDLGFDFDQEIIEVLAPVDRWAKEWMWIPGFMLFALIVMLQRRRRVPEPSDKTA 864          
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2099.1 vs. uniprot
Match: W7QCT5_9GAMM (DctM domain-containing protein (Fragment) n=1 Tax=Halomonas sp. BC04 TaxID=1403540 RepID=W7QCT5_9GAMM)

HSP 1 Score: 600 bits (1548), Expect = 2.310e-213
Identity = 311/367 (84.74%), Postives = 339/367 (92.37%), Query Frame = 1
Query:    1 LTADVKEGFKDLWEGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSGGNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIVVLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLINVTVMQGIVVFIVATVAMLIFAAGTQGYMLVRSRWYESLLLLLVAFALFRPGFWMDRIHDPYESVPPAQFVEALGSVADGSNLRVQIAGENDYGDPMTTYILVPVPRGDTAEERMEALGMELWVDGDEATVDFVEFGSQAADLGFDFDQEILEVLAPVDRWTKEWIWIPALLVFAFVVLMQRRRRNNLPSDGA 1101
            L  D+KEGF DLW+GLV GARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILS GNLMLILLLTA+LSLILGMGLPTTANYIVVSAL+APVIV LGQQ+GLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLI+V  +QGIV+FI+AT+AMLIFAAGTQG+M+ R+RWYES+LLLLVAF LFRPGFWMDRIHDPY+SVPPAQFV+ALG V DGSNLRVQI+GE+ +GDP+TTYILVPVPRGDT EERM+ LGMEL +DGD+A VDFVEFGS AADLGFDFDQEI+EV APVDRW KEW+W+P  LVF  VVL+QRRRRN  P+  A
Sbjct:   82 LAEDIKEGFMDLWDGLVTGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSMGNLMLILLLTAVLSLILGMGLPTTANYIVVSALLAPVIVTLGQQSGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLIDVGWIQGIVIFIIATIAMLIFAAGTQGFMIARNRWYESILLLLVAFTLFRPGFWMDRIHDPYQSVPPAQFVQALGEVDDGSNLRVQISGEDAFGDPLTTYILVPVPRGDTPEERMQELGMELVIDGDQAIVDFVEFGSLAADLGFDFDQEIIEVSAPVDRWAKEWMWVPGFLVFGLVVLLQRRRRNQQPASTA 448          
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2099.1 vs. uniprot
Match: A0A1R4I5P6_9GAMM (TRAP-type uncharacterized transport system, fused permease component n=3 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A1R4I5P6_9GAMM)

HSP 1 Score: 615 bits (1586), Expect = 4.990e-213
Identity = 319/370 (86.22%), Postives = 345/370 (93.24%), Query Frame = 1
Query:    1 LTADVKEGFKDLWEGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSGGNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIVVLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLINVTVMQGIVVFIVATVAMLIFAAGTQGYMLVRSRWYESLLLLLVAFALFRPGFWMDRIHDPYESVPPAQFVEALGSVADGSNLRVQIAGENDYGDPMTTYILVPVPRGDTAEERMEALGMELWVDGDEATVDFVEFGSQAADLGFDFDQEILEVLAPVDRWTKEWIWIPALLVFAFVVLMQRRRRNNLPS-DGAAV 1107
            + AD+KEGF DLW+GLV GARNMIGIGIATA AGI+VGAVSQTGVGLVLADVVEILSGGNLM+IL LTALLSLILGMGLPTTANYIVVSALMAPVIV+LGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDP+RTGFQAFYYSLRTAALPFLFIFNTDLLLI+VT MQG+VVF+VATVAMLIFAAGTQGYML R+RWYESLLLLLVAF LFRPGFWMD+IHDPYESVPPAQF +AL  V DGSNLRVQIAGE+D+G PMTTY+LVPVPRGDT +ER+E LGMEL+VDGD+  VDFV FGSQAADLGFDFDQEI+EVLAPV+RWTKEW+W+PAL +F FVVLMQRRRR+     DGAAV
Sbjct:  497 MAADIKEGFLDLWDGLVTGARNMIGIGIATATAGIVVGAVSQTGVGLVLADVVEILSGGNLMMILFLTALLSLILGMGLPTTANYIVVSALMAPVIVMLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPIRTGFQAFYYSLRTAALPFLFIFNTDLLLIDVTPMQGVVVFVVATVAMLIFAAGTQGYMLTRNRWYESLLLLLVAFTLFRPGFWMDKIHDPYESVPPAQFADALERVEDGSNLRVQIAGEDDFGSPMTTYVLVPVPRGDTGQERLENLGMELYVDGDQTLVDFVAFGSQAADLGFDFDQEIIEVLAPVNRWTKEWMWLPALAIFGFVVLMQRRRRSKKSDHDGAAV 866          
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2099.1 vs. uniprot
Match: A0A6F8SY42_9GAMM (C4-dicarboxylate ABC transporter n=33 Tax=Halomonadaceae TaxID=28256 RepID=A0A6F8SY42_9GAMM)

HSP 1 Score: 599 bits (1544), Expect = 1.500e-206
Identity = 311/352 (88.35%), Postives = 334/352 (94.89%), Query Frame = 1
Query:    1 LTADVKEGFKDLWEGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSGGNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIVVLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLINVTVMQGIVVFIVATVAMLIFAAGTQGYMLVRSRWYESLLLLLVAFALFRPGFWMDRIHDPYESVPPAQFVEALGSVADGSNLRVQIAGENDYGDPMTTYILVPVPRGDTAEERMEALGMELWVDGDEATVDFVEFGSQAADLGFDFDQEILEVLAPVDRWTKEWIWIPALLVFAFVV 1056
            + AD+KEGFKDLW+GLV GARNMIGIGIATA AGI+VGAVSQTGVGLVLADVVEILSGGNLM+ILLLTALLSLILGMGLPTTANYIVVSALMAPVIV+LGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLI+VTVMQGI+VFIVAT+AMLIFAAGTQGYML R+RWYESLLLLLVAF LFRPGFWMD+IHDPYESVPPAQF EALG V +GSNLRVQIAGE+D+G PMTTY+LVPVPRG+T EERM  LG+EL+ DGD+  VDFVEFGSQAA+LGFDFDQEILEVLAPVDRWTKEW+W+PAL +F  VV
Sbjct:  508 MAADIKEGFKDLWDGLVTGARNMIGIGIATATAGIVVGAVSQTGVGLVLADVVEILSGGNLMMILLLTALLSLILGMGLPTTANYIVVSALMAPVIVLLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLIDVTVMQGILVFIVATIAMLIFAAGTQGYMLTRNRWYESLLLLLVAFTLFRPGFWMDKIHDPYESVPPAQFAEALGQVDNGSNLRVQIAGEDDFGAPMTTYMLVPVPRGETGEERMANLGIELYEDGDQTLVDFVEFGSQAAELGFDFDQEILEVLAPVDRWTKEWMWLPALGIFGLVV 859          
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2099.1 vs. uniprot
Match: UPI001D0A2A24 (TRAP transporter permease n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D0A2A24)

HSP 1 Score: 596 bits (1537), Expect = 1.150e-205
Identity = 307/361 (85.04%), Postives = 336/361 (93.07%), Query Frame = 1
Query:    1 LTADVKEGFKDLWEGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSGGNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIVVLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLINVTVMQGIVVFIVATVAMLIFAAGTQGYMLVRSRWYESLLLLLVAFALFRPGFWMDRIHDPYESVPPAQFVEALGSVADGSNLRVQIAGENDYGDPMTTYILVPVPRGDTAEERMEALGMELWVDGDEATVDFVEFGSQAADLGFDFDQEILEVLAPVDRWTKEWIWIPALLVFAFVVLMQRRRRNN 1083
            LT DVKEGF DLW+GLV GARNMIGIGIATA AGI+VGAVSQTGVGLVLADVVEILSGGNLM+ILLLTA+LSLILGMGLPTTANYIVVSALMAPVIV+LGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDP+RTGFQAFYYSLRTAALPFLFIFNTDLLLI+VTV+QG+V+FIVAT+AMLIFAAGTQGY L RSRWYES+LLLLVAF LFRPGFWMDR+HDPY+SVPPAQF EALG V +GSNLRVQI GE+ +G PM+TY+LVPVP G T EER+E LG+EL+ DGDE  VDFVEFGS AA+LGFDFDQ+I+EVLAPVDRWTKEW+W+PAL++FA VVLMQR RR  
Sbjct:  496 LTDDVKEGFIDLWDGLVTGARNMIGIGIATATAGIVVGAVSQTGVGLVLADVVEILSGGNLMVILLLTAVLSLILGMGLPTTANYIVVSALMAPVIVMLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPIRTGFQAFYYSLRTAALPFLFIFNTDLLLIDVTVVQGVVIFIVATIAMLIFAAGTQGYFLTRSRWYESILLLLVAFTLFRPGFWMDRLHDPYDSVPPAQFAEALGQVDEGSNLRVQIQGEDSFGSPMSTYVLVPVPDGATGEERLENLGLELYTDGDETLVDFVEFGSPAAELGFDFDQQIVEVLAPVDRWTKEWMWLPALMLFALVVLMQRSRRRK 856          
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2099.1 vs. uniprot
Match: UPI00201EF068 (TRAP transporter permease n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201EF068)

HSP 1 Score: 593 bits (1530), Expect = 1.310e-204
Identity = 302/361 (83.66%), Postives = 336/361 (93.07%), Query Frame = 1
Query:    1 LTADVKEGFKDLWEGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSGGNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIVVLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLINVTVMQGIVVFIVATVAMLIFAAGTQGYMLVRSRWYESLLLLLVAFALFRPGFWMDRIHDPYESVPPAQFVEALGSVADGSNLRVQIAGENDYGDPMTTYILVPVPRGDTAEERMEALGMELWVDGDEATVDFVEFGSQAADLGFDFDQEILEVLAPVDRWTKEWIWIPALLVFAFVVLMQRRRRNN 1083
            +  D+++G +DLW+GLV+GARNMIGIGIATA AGI+VGAVSQTGVGLVLADVVEILSGGNLM+ILLLTA+LSLILGMGLPTTANYIVVSALMAPVIV+LGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLI+V+ +QGIV+FI+AT+AMLIFAAGTQGYM+ RSRWYES+LLLLVAF LFRPGFWMDRIHDPY+S+PPAQF EALGSV   SNLRVQI+GE+D+G PMTTYILVPVP G+T+EERM+ LGMELWVDGD+  VDFVEFGS A +LGFDFDQEI+EV APVDRW +EW+WIP   +FA VVLMQRRRR+ 
Sbjct:  497 VAVDIRQGVQDLWDGLVSGARNMIGIGIATATAGIVVGAVSQTGVGLVLADVVEILSGGNLMMILLLTAILSLILGMGLPTTANYIVVSALMAPVIVLLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLIDVSFLQGIVIFIIATIAMLIFAAGTQGYMITRSRWYESVLLLLVAFTLFRPGFWMDRIHDPYQSIPPAQFAEALGSVDPDSNLRVQISGEDDFGSPMTTYILVPVPGGETSEERMQQLGMELWVDGDQTLVDFVEFGSTAQNLGFDFDQEIIEVEAPVDRWAREWMWIPGFAIFALVVLMQRRRRDK 857          
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2099.1 vs. uniprot
Match: A0A1P8R5Y8_9GAMM (C4-dicarboxylate ABC transporter n=5 Tax=Halomonas TaxID=2745 RepID=A0A1P8R5Y8_9GAMM)

HSP 1 Score: 589 bits (1519), Expect = 6.000e-203
Identity = 300/368 (81.52%), Postives = 341/368 (92.66%), Query Frame = 1
Query:    1 LTADVKEGFKDLWEGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSGGNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIVVLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQAFYYSLRTAALPFLFIFNTDLLLINVTVMQGIVVFIVATVAMLIFAAGTQGYMLVRSRWYESLLLLLVAFALFRPGFWMDRIHDPYESVPPAQFVEALGSVADGSNLRVQIAGENDYGDPMTTYILVPVPRGDTAEERMEALGMELWVDGDEATVDFVEFGSQAADLGFDFDQEILEVLAPVDRWTKEWIWIPALLVFAFVVLMQRRRRNNLPSDGAA 1104
            L AD+KEGF DLW+GLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILS GNLMLILLLTA+LSLILGMGLPTTANYIVVSAL+APVIV+LGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDP+RTGFQAFYYSLRTAALPFLFIFNTDLLLI+V+ MQGIV+FI++T+AMLIFAAGTQG+M+VR+RWYE+L+LLLVAF LFRPG+WMD+IHDPYES+PPAQ  +AL  + DGSN+RVQIAGE+ +GDPMTTY+LVPVPRGD+  ER++ LG+EL+VDGD+A VDFVEFGS AAD+GFDFDQE+LE+LAPVDRW KEW+WIP  L+F  VV++QRRRR    +  A+
Sbjct:  496 LAADIKEGFLDLWDGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADVVEILSMGNLMLILLLTAVLSLILGMGLPTTANYIVVSALLAPVIVMLGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPIRTGFQAFYYSLRTAALPFLFIFNTDLLLIDVSFMQGIVIFIISTIAMLIFAAGTQGFMIVRNRWYENLILLLVAFTLFRPGYWMDQIHDPYESIPPAQLEQALDDIEDGSNIRVQIAGEDAFGDPMTTYLLVPVPRGDSGAERLQNLGLELYVDGDQAIVDFVEFGSLAADVGFDFDQEVLEILAPVDRWAKEWMWIPGFLLFGLVVVLQRRRREPTSAQTAS 863          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13507.2099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A117KHS9_9GAMM6.880e-22188.38DctM domain-containing protein n=6 Tax=root TaxID=... [more]
A0A8H9MAH6_9GAMM3.030e-21687.03C4-dicarboxylate ABC transporter n=16 Tax=Halomona... [more]
A0A3B7L743_9GAMM3.140e-21687.33TRAP transporter fused permease subunit n=12 Tax=H... [more]
A0A651E0G6_HALSX6.710e-21687.67TRAP transporter fused permease subunit n=1 Tax=Ha... [more]
W7QCT5_9GAMM2.310e-21384.74DctM domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1R4I5P6_9GAMM4.990e-21386.22TRAP-type uncharacterized transport system, fused ... [more]
A0A6F8SY42_9GAMM1.500e-20688.35C4-dicarboxylate ABC transporter n=33 Tax=Halomona... [more]
UPI001D0A2A241.150e-20585.04TRAP transporter permease n=1 Tax=Halomonas malpee... [more]
UPI00201EF0681.310e-20483.66TRAP transporter permease n=1 Tax=Halomonas olivar... [more]
A0A1P8R5Y8_9GAMM6.000e-20381.52C4-dicarboxylate ABC transporter n=5 Tax=Halomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13507contigE-siliculosus-1a_F_contig13507:2..1120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size1119
Model size1119
Exons1
Hectar predicted targeting categoryother localisation
COG Functional cat.S
EggNOG OGs1MUNB@1224,1RMH7@1236,1XHEU@135619,COG4666@1,COG4666@2
EggNOG free text desc.TRAP transporter, 4TM 12TM fusion protein
Seed eggNOG ortholog232346.JHQL01000004_gene1812
Seed ortholog evalue7.2e-174
Seed ortholog score616.7
Taxonomic scopeBacteria
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927866.6809943-CDS-E-siliculosus-1a_F_contig13507:1..11201622927866.6809943-CDS-E-siliculosus-1a_F_contig13507:1..1120Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13507 2..1120 +
1696318715.1718013-CDS-E-siliculosus-1a_F_contig13507:1..11201696318715.1718013-CDS-E-siliculosus-1a_F_contig13507:1..1120Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13507 2..1120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13507.2099.1prot_E-siliculosus-1a_F_contig13507.2099.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13507 2..1120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13507.2099.1

>prot_E-siliculosus-1a_F_contig13507.2099.1 ID=prot_E-siliculosus-1a_F_contig13507.2099.1|Name=mRNA_E-siliculosus-1a_F_contig13507.2099.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=373bp
LTADVKEGFKDLWEGLVAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLA
DVVEILSGGNLMLILLLTALLSLILGMGLPTTANYIVVSALMAPVIVVLG
QQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPLRTGFQ
AFYYSLRTAALPFLFIFNTDLLLINVTVMQGIVVFIVATVAMLIFAAGTQ
GYMLVRSRWYESLLLLLVAFALFRPGFWMDRIHDPYESVPPAQFVEALGS
VADGSNLRVQIAGENDYGDPMTTYILVPVPRGDTAEERMEALGMELWVDG
DEATVDFVEFGSQAADLGFDFDQEILEVLAPVDRWTKEWIWIPALLVFAF
VVLMQRRRRNNLPSDGAAVTSA*
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mRNA from alignment at E-siliculosus-1a_F_contig13507:2..1120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13507.2099.1 ID=mRNA_E-siliculosus-1a_F_contig13507.2099.1|Name=mRNA_E-siliculosus-1a_F_contig13507.2099.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1119bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13507:2..1120+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCACGGCTGACGTCAAAGAAGGCTTTAAAGACCTCTGGGAGGGCCTTGT TGCCGGTGCACGAAATATGATCGGTATTGGTATCGCGACAGCCGCCGCTG GCATCATTGTAGGTGCTGTATCGCAAACGGGTGTTGGTCTGGTGCTGGCG GATGTGGTTGAAATATTATCCGGTGGCAATTTGATGCTGATTCTGCTGCT GACCGCACTCCTTAGTTTGATTTTAGGTATGGGCTTGCCGACTACCGCTA ACTATATCGTAGTGTCCGCCCTGATGGCGCCGGTGATAGTAGTGCTGGGC CAGCAAAACGGATTAATTGTACCGCTGATTGCAGTGCATCTGTTTGTATT TTACTTCGGCATTATGGCGGACGTTACGCCCCCCGTAGGGTTGGCCTCAT TCGCTGCAGCGGCGGTCTCCGGCGGTGACCCGTTGCGCACCGGTTTCCAA GCATTTTATTACAGCTTGCGTACAGCAGCACTCCCGTTCCTGTTTATCTT CAACACTGATCTGTTGTTGATCAATGTCACGGTAATGCAGGGAATAGTGG TGTTTATTGTGGCAACAGTGGCGATGCTGATATTCGCGGCGGGTACGCAA GGCTATATGCTTGTACGTAGCCGCTGGTATGAATCTTTGCTGCTGTTGTT GGTGGCATTTGCATTGTTCCGTCCAGGCTTCTGGATGGATAGGATTCATG ACCCCTACGAGTCAGTGCCTCCCGCCCAGTTTGTTGAAGCCTTGGGTAGC GTTGCAGACGGTAGTAACTTGCGGGTGCAGATCGCAGGCGAGAACGATTA CGGCGATCCCATGACGACCTATATTCTTGTCCCGGTACCGCGTGGCGATA CGGCTGAAGAGCGTATGGAAGCACTGGGTATGGAGCTGTGGGTTGATGGT GATGAAGCTACCGTAGATTTTGTAGAGTTTGGTAGCCAAGCCGCCGATCT GGGCTTTGACTTTGATCAAGAGATCCTCGAAGTGTTAGCGCCGGTGGATC GCTGGACCAAAGAGTGGATATGGATACCTGCATTGTTGGTGTTTGCTTTT GTTGTACTGATGCAGCGTCGTCGGCGTAACAATCTTCCTTCTGATGGCGC AGCGGTAACGTCTGCTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13507:2..1120+

>mRNA_E-siliculosus-1a_F_contig13507.2099.1 ID=mRNA_E-siliculosus-1a_F_contig13507.2099.1|Name=mRNA_E-siliculosus-1a_F_contig13507.2099.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2238bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13507:2..1120+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCACGGCTGACGTCAAAGAAGGCTTTAAAGACCTCTGGGAGGGCCTTGT
TGCCGGTGCACGAAATATGATCGGTATTGGTATCGCGACAGCCGCCGCTG
GCATCATTGTAGGTGCTGTATCGCAAACGGGTGTTGGTCTGGTGCTGGCG
GATGTGGTTGAAATATTATCCGGTGGCAATTTGATGCTGATTCTGCTGCT
GACCGCACTCCTTAGTTTGATTTTAGGTATGGGCTTGCCGACTACCGCTA
ACTATATCGTAGTGTCCGCCCTGATGGCGCCGGTGATAGTAGTGCTGGGC
CAGCAAAACGGATTAATTGTACCGCTGATTGCAGTGCATCTGTTTGTATT
TTACTTCGGCATTATGGCGGACGTTACGCCCCCCGTAGGGTTGGCCTCAT
TCGCTGCAGCGGCGGTCTCCGGCGGTGACCCGTTGCGCACCGGTTTCCAA
GCATTTTATTACAGCTTGCGTACAGCAGCACTCCCGTTCCTGTTTATCTT
CAACACTGATCTGTTGTTGATCAATGTCACGGTAATGCAGGGAATAGTGG
TGTTTATTGTGGCAACAGTGGCGATGCTGATATTCGCGGCGGGTACGCAA
GGCTATATGCTTGTACGTAGCCGCTGGTATGAATCTTTGCTGCTGTTGTT
GGTGGCATTTGCATTGTTCCGTCCAGGCTTCTGGATGGATAGGATTCATG
ACCCCTACGAGTCAGTGCCTCCCGCCCAGTTTGTTGAAGCCTTGGGTAGC
GTTGCAGACGGTAGTAACTTGCGGGTGCAGATCGCAGGCGAGAACGATTA
CGGCGATCCCATGACGACCTATATTCTTGTCCCGGTACCGCGTGGCGATA
CGGCTGAAGAGCGTATGGAAGCACTGGGTATGGAGCTGTGGGTTGATGGT
GATGAAGCTACCGTAGATTTTGTAGAGTTTGGTAGCCAAGCCGCCGATCT
GGGCTTTGACTTTGATCAAGAGATCCTCGAAGTGTTAGCGCCGGTGGATC
GCTGGACCAAAGAGTGGATATGGATACCTGCATTGTTGGTGTTTGCTTTT
GTTGTACTGATGCAGCGTCGTCGGCGTAACAATCTTCCTTCTGATGGCGC
AGCGGTAACGTCTGCTTAACTCACGGCTGACGTCAAAGAAGGCTTTAAAG
ACCTCTGGGAGGGCCTTGTTGCCGGTGCACGAAATATGATCGGTATTGGT
ATCGCGACAGCCGCCGCTGGCATCATTGTAGGTGCTGTATCGCAAACGGG
TGTTGGTCTGGTGCTGGCGGATGTGGTTGAAATATTATCCGGTGGCAATT
TGATGCTGATTCTGCTGCTGACCGCACTCCTTAGTTTGATTTTAGGTATG
GGCTTGCCGACTACCGCTAACTATATCGTAGTGTCCGCCCTGATGGCGCC
GGTGATAGTAGTGCTGGGCCAGCAAAACGGATTAATTGTACCGCTGATTG
CAGTGCATCTGTTTGTATTTTACTTCGGCATTATGGCGGACGTTACGCCC
CCCGTAGGGTTGGCCTCATTCGCTGCAGCGGCGGTCTCCGGCGGTGACCC
GTTGCGCACCGGTTTCCAAGCATTTTATTACAGCTTGCGTACAGCAGCAC
TCCCGTTCCTGTTTATCTTCAACACTGATCTGTTGTTGATCAATGTCACG
GTAATGCAGGGAATAGTGGTGTTTATTGTGGCAACAGTGGCGATGCTGAT
ATTCGCGGCGGGTACGCAAGGCTATATGCTTGTACGTAGCCGCTGGTATG
AATCTTTGCTGCTGTTGTTGGTGGCATTTGCATTGTTCCGTCCAGGCTTC
TGGATGGATAGGATTCATGACCCCTACGAGTCAGTGCCTCCCGCCCAGTT
TGTTGAAGCCTTGGGTAGCGTTGCAGACGGTAGTAACTTGCGGGTGCAGA
TCGCAGGCGAGAACGATTACGGCGATCCCATGACGACCTATATTCTTGTC
CCGGTACCGCGTGGCGATACGGCTGAAGAGCGTATGGAAGCACTGGGTAT
GGAGCTGTGGGTTGATGGTGATGAAGCTACCGTAGATTTTGTAGAGTTTG
GTAGCCAAGCCGCCGATCTGGGCTTTGACTTTGATCAAGAGATCCTCGAA
GTGTTAGCGCCGGTGGATCGCTGGACCAAAGAGTGGATATGGATACCTGC
ATTGTTGGTGTTTGCTTTTGTTGTACTGATGCAGCGTCGTCGGCGTAACA
ATCTTCCTTCTGATGGCGCAGCGGTAACGTCTGCTTAA
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