mRNA_E-siliculosus-1a_F_contig13504.2097.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13504.2097.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE) HSP 1 Score: 245 bits (626), Expect = 2.830e-72 Identity = 121/149 (81.21%), Postives = 128/149 (85.91%), Query Frame = 1
Query: 1 MEGLINTPIEPRQNPDDYFNQKHLLQHNAEKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDKM*TTMGHMFLDEQSRKGSKGSIARRGFAMTTTTSEGPTCFDCGEKGHIRSNCPERKGKGEK-TKPTGAAKWA--RFTSR 438
ME LINTP+EPRQNPDDYFNQKHLL+H AEKMGETISD YF D CVTGFT+EYKDVKMIMYRDPDFNVDKM TTM HMFLDEQSR G KGSIA RGFAMT TTSE PTCFDCGEKGHI NC E++GKG+K TKP GAAKW FT+R
Sbjct: 116 MEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPTCFDCGEKGHIWRNCSEKRGKGKKKTKPAGAAKWCSVHFTTR 264
BLAST of mRNA_E-siliculosus-1a_F_contig13504.2097.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI) HSP 1 Score: 217 bits (552), Expect = 1.430e-66 Identity = 106/145 (73.10%), Postives = 115/145 (79.31%), Query Frame = 1
Query: 1 MEGLINTPIEPRQNPDDYFNQKHLLQHNAEKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDKM*TTMGHMFLDEQSRKGSKGSIARRGFAMTTTTSEGPTCFDCGEKGHIRSNCPERKGKGE--KTKPTGAAKWARF 429
ME L NT +EP QNPDDYFN KHLL+H EKMGE ISDRYFKD+CVTGFT EYK+VKMIM+RDP+FNV+ M TTM HM LDEQSRKGSKG IA RGF M TT SE TCF CGEKGHIR NC +R+GKG KTKP GA KW F
Sbjct: 1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWCCF 145
BLAST of mRNA_E-siliculosus-1a_F_contig13504.2097.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE) HSP 1 Score: 178 bits (452), Expect = 1.600e-51 Identity = 85/143 (59.44%), Postives = 108/143 (75.52%), Query Frame = 1
Query: 1 MEGLINTPIEPRQNPDDYFNQKHLLQHNAEKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDKM*TTMGHMFLDEQSRKGSKGSIARRGFAMTTTTSEGPTCFDCGEKGHIRSNCPERKGKG---EKTKPTGAAKW 420
++ L T +EP +NPDD+FN+KH L+ EKMGETISDR FKDICV GF+++YKD+KM+++RDP F+V +M TM ++FLDEQ RK +KG IA RGFAM T TS GP CF+C E GH+R NC R+ +G EKTKP GA KW
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS-GPICFECNEPGHVRRNCSNRQREGRMAEKTKPAGATKW 277
BLAST of mRNA_E-siliculosus-1a_F_contig13504.2097.1 vs. uniprot
Match: A0A6H5JYP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP5_9PHAE) HSP 1 Score: 179 bits (453), Expect = 1.870e-51 Identity = 90/129 (69.77%), Postives = 103/129 (79.84%), Query Frame = 1
Query: 25 IEPRQNPDDYFNQKHLLQHNAEKMGETISDRYFKDI--CVTGFTDEYKDVKMIMYRDPDFNVDKM*TTMGHMFLDEQSRKGSKGSIARRGFAMTTTTSEGPTCFDCGEKGHIRSNCPERKGKGE-KTKP 402
+EP Q PDDY NQKHLL+H ++MGE ISD YFKDI CVTGFTDE KDVKM +YRDP+FNV++M TTM HMFLDEQSRK SKG IA R FAM TTTSE + F CGEK HIR NCP+R+G+ + KTKP
Sbjct: 1 MEPGQKPDDYINQKHLLRHKVQQMGEKISDSYFKDIEECVTGFTDESKDVKMTVYRDPNFNVNQMQTTMRHMFLDEQSRKWSKGGIAGRDFAMVTTTSEQTSHFGCGEKRHIRRNCPQRRGQRQRKTKP 129
BLAST of mRNA_E-siliculosus-1a_F_contig13504.2097.1 vs. uniprot
Match: A0A6H5KZM5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM5_9PHAE) HSP 1 Score: 176 bits (447), Expect = 2.480e-50 Identity = 89/141 (63.12%), Postives = 105/141 (74.47%), Query Frame = 1
Query: 1 MEGLINTPIEPRQNPDDYFNQKHLLQHNAEKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDKM*TTMGHMFLDEQSRKGSKGSIARRGFAMTTTTSEGPTCFDCGEKGHIRSNCPERKGKGEK-TKPTGAAKW 420
ME L N P+ P +NPDDYFNQKHLL+ +KMGE ISDR FKDICV GF+DEYKDVK++++RDP FNV M +TM ++FLDEQSRK KG IA RGFAM TT S+ C C E GHIR NCP+ K + +K TKP GA KW
Sbjct: 1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKEWKGRIAGRGFAMATTASD-IICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKW 140
BLAST of mRNA_E-siliculosus-1a_F_contig13504.2097.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE) HSP 1 Score: 177 bits (450), Expect = 3.350e-50 Identity = 89/141 (63.12%), Postives = 106/141 (75.18%), Query Frame = 1
Query: 1 MEGLINTPIEPRQNPDDYFNQKHLLQHNAEKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDKM*TTMGHMFLDEQSRKGSKGSIARRGFAMTTTTSEGPTCFDCGEKGHIRSNCPERKGKGEK-TKPTGAAKW 420
ME L N P+ P +NPD+YFNQKHLL+ +KMGE ISDR FKDICV GF+DEYKDVK++++RDP FNV M +TM ++FLDEQSRKG KG IA RGFAM TT S+ C C E GHIR NCP+ K + +K TKP GA KW
Sbjct: 138 MEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASD-IICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKW 277
BLAST of mRNA_E-siliculosus-1a_F_contig13504.2097.1 vs. uniprot
Match: A0A6H5KMR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR7_9PHAE) HSP 1 Score: 176 bits (445), Expect = 2.920e-49 Identity = 84/143 (58.74%), Postives = 107/143 (74.83%), Query Frame = 1
Query: 1 MEGLINTPIEPRQNPDDYFNQKHLLQHNAEKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDKM*TTMGHMFLDEQSRKGSKGSIARRGFAMTTTTSEGPTCFDCGEKGHIRSNCPERKGKG---EKTKPTGAAKW 420
+ L T +EP +NPDD+FN+KH L+ EKMGETISDR FKDICV GF+++YK +KM+++RDP F+V +M TM ++FLDEQ RK +KG IA RGFAM T TS GP CF+C E GH+R NCP R+ +G +KTKP GA KW
Sbjct: 136 LNDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKFIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS-GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKW 277
BLAST of mRNA_E-siliculosus-1a_F_contig13504.2097.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE) HSP 1 Score: 180 bits (456), Expect = 6.300e-49 Identity = 85/143 (59.44%), Postives = 109/143 (76.22%), Query Frame = 1
Query: 1 MEGLINTPIEPRQNPDDYFNQKHLLQHNAEKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDKM*TTMGHMFLDEQSRKGSKGSIARRGFAMTTTTSEGPTCFDCGEKGHIRSNCPERKGKG---EKTKPTGAAKW 420
++ L T +EP +NPDD+FN+KH L+ EKMGETISDR FKDICV GF+++YKD+KM+++RDP F+V +M TM ++FLDEQ RK +KG IA RGFAM T TS GP CF+C E GH+R NCP R+ +G +KTKP GA KW
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS-GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKW 277
BLAST of mRNA_E-siliculosus-1a_F_contig13504.2097.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE) HSP 1 Score: 179 bits (455), Expect = 1.940e-48 Identity = 90/141 (63.83%), Postives = 106/141 (75.18%), Query Frame = 1
Query: 1 MEGLINTPIEPRQNPDDYFNQKHLLQHNAEKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDKM*TTMGHMFLDEQSRKGSKGSIARRGFAMTTTTSEGPTCFDCGEKGHIRSNCPERKGKGEK-TKPTGAAKW 420
ME L N P+ P +NPDDYFNQKHLL+ +KMGE ISDR FKDICV GF+DEYKDVK++++RDP FNV M +TM ++FLDEQSRKG KG IA RGFAM TT S+ C C E GHIR NCP+ K + +K TKP GA KW
Sbjct: 156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASD-IICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKW 295
BLAST of mRNA_E-siliculosus-1a_F_contig13504.2097.1 vs. uniprot
Match: A0A6H5K7P0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P0_9PHAE) HSP 1 Score: 173 bits (438), Expect = 1.980e-48 Identity = 82/143 (57.34%), Postives = 107/143 (74.83%), Query Frame = 1
Query: 1 MEGLINTPIEPRQNPDDYFNQKHLLQHNAEKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDKM*TTMGHMFLDEQSRKGSKGSIARRGFAMTTTTSEGPTCFDCGEKGHIRSNCPERKGKG---EKTKPTGAAKW 420
++ L T +EP +NPDD+FN+KH L+ EKMGETISDR FKDICV GF+++YKD+KM+++RDP F V +M T+ ++FLDE+ RK +KG IA R FAM T TS GP CF+C E GH+R NCP R+ +G +KTKP GA KW
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFEVQQMQATVRNIFLDERMRKRTKGEIAGRVFAMATKTS-GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKW 277 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13504.2097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13504.2097.1 >prot_E-siliculosus-1a_F_contig13504.2097.1 ID=prot_E-siliculosus-1a_F_contig13504.2097.1|Name=mRNA_E-siliculosus-1a_F_contig13504.2097.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=125bp MGSVHFTIRHSDEVCFEQGAPRPVKSSKSPHALIEGFMYATVHKREELKPback to top mRNA from alignment at E-siliculosus-1a_F_contig13504:270..1160+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13504.2097.1 ID=mRNA_E-siliculosus-1a_F_contig13504.2097.1|Name=mRNA_E-siliculosus-1a_F_contig13504.2097.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=891bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13504:270..1160+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13504:270..1160+ >mRNA_E-siliculosus-1a_F_contig13504.2097.1 ID=mRNA_E-siliculosus-1a_F_contig13504.2097.1|Name=mRNA_E-siliculosus-1a_F_contig13504.2097.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=750bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13504:270..1160+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |