mRNA_E-siliculosus-1a_F_contig1350.2093.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1350.2093.1
Unique NamemRNA_E-siliculosus-1a_F_contig1350.2093.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1350.2093.1 vs. uniprot
Match: A0A6H5KGY0_9PHAE (PNPLA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGY0_9PHAE)

HSP 1 Score: 588 bits (1515), Expect = 1.840e-209
Identity = 307/322 (95.34%), Postives = 312/322 (96.89%), Query Frame = 3
Query:   48 MRGFRTMVALNNVLHVGAFLLPISSVLRGNMAPKSTFLPSPAGTPDPAALRRRLTLSAGSDDEGIVASPAALPPSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASREDLSLGDDRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLDCIKEAALPLQKNTAGGLTEKD 1013
            MRGFR MVALNNVLHVGAFL PISSVLRGN APKST+LPSPAGTPDPAALRRRLTLSAGS+DEGI+ASPA LP SGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDD DVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGR+VDGSFRASREDLSLGD RPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGY+HVQTMLAEGKLDCIKEAALPLQ NT GGLT KD
Sbjct:    1 MRGFRAMVALNNVLHVGAFLWPISSVLRGNTAPKSTYLPSPAGTPDPAALRRRLTLSAGSNDEGIIASPAVLPSSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFRASREDLSLGDGRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKLDCIKEAALPLQMNTTGGLTGKD 322          
BLAST of mRNA_E-siliculosus-1a_F_contig1350.2093.1 vs. uniprot
Match: A0A7S0MNQ6_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MNQ6_9CRYP)

HSP 1 Score: 183 bits (465), Expect = 4.140e-51
Identity = 100/233 (42.92%), Postives = 125/233 (53.65%), Query Frame = 3
Query:  267 PSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPR--PFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSF----RASREDLSLGDDRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKL 947
            P   P++ FPGGGI+FWWQAG + ALQE Y L  LD  GASAG+L A               A  L D N +W RP GL G+WG M+  WL ELLPDD    C  RV + V  + P   P RR +V DF +K D+I AC+ASVHIP+F+D   +ARHRG R VDGS     R +      GD +  +      D  +A  R  FL   + EG   + +RGY+H     A   L
Sbjct:   61 PERPPLIVFPGGGIYFWWQAGAVKALQEMYTLDDLDMTGASAGALCAVLAGCNVDMDRAFELASRLADENGVWERPQGLMGIWGGMIRQWLHELLPDDAARRCSGRVAISVTALSPAVPPLRRLSVDDFETKGDVIDACLASVHIPFFLDGKATARHRGARCVDGSLTFALRRTPWLFKPGDRQAALVVHQSHDAGLAGDRPGFLETLSLEGFRELYRRGYDHTHAAHAAAAL 293          
BLAST of mRNA_E-siliculosus-1a_F_contig1350.2093.1 vs. uniprot
Match: A0A388K383_CHABU (Patatin n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K383_CHABU)

HSP 1 Score: 187 bits (474), Expect = 1.910e-49
Identity = 107/240 (44.58%), Postives = 138/240 (57.50%), Query Frame = 3
Query:  276 KPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGI-----WPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASREDLSLGDDRPTVYFDYDEDEVMAARRGKFLSLTNQ-EG-------LLFMRQRGYEHVQTMLAEGKLDCI 956
            +P+LSF GGGIFF+WQ G   AL   ++L   D  GASAG+LAA               A  L   N +W RP GL G+WG M+  WLDELLP +   +C  R+H+ V+ +         F RR V  F SK DLI ACMASVHIP+F+D    AR R    VDGSF AS+  +S   DRPTV+ DY +DE +A++R +FLSL  Q EG       LL M  +G  HV+ +L++ KL  +
Sbjct:  380 RPLLSFQGGGIFFYWQLGAARALSRHFDLDKADMAGASAGALAATLAACEVDAEEATKLAFQLSLDNRVWDRPTGLGGIWGPMIRSWLDELLPPNAAQLCDGRLHIYVLELPSLRRRSPAFVRRGVCQFHSKRDLIDACMASVHIPFFIDGGACARFRDRWCVDGSFLASKHSISPYPDRPTVWVDYMDDEDLASQRLRFLSLGAQGEGPQRTWQWLLTMISKGEAHVEKLLSDHKLAAL 619          
BLAST of mRNA_E-siliculosus-1a_F_contig1350.2093.1 vs. uniprot
Match: K0TQT9_THAOC (PNPLA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQT9_THAOC)

HSP 1 Score: 175 bits (443), Expect = 2.790e-48
Identity = 95/231 (41.13%), Postives = 139/231 (60.17%), Query Frame = 3
Query:  279 PVLSFPGGGIFFWWQAGVISALQER-YNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDR-VHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASRED-LSLGD-DRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLDCIK 959
            P + FPGGG+FF+WQAGV++ LQE  Y+LS+    GASAG+L+A               AL +   N +W RP+GL G+WG+++EDWLD LLPDD  +   D  +H+LV  +    F +  VS+F  +SDLI+A MASVH+PWF+D + +   RG   +DGSF AS  D LS  D DR  +  D+  D VM  + G+F+ + + + +  +  RG E+ + M   G+  C++
Sbjct:   39 PAIVFPGGGLFFYWQAGVVTHLQEAGYDLSAATMSGASAGALSATLAKTGVSPIDATELALHMSKENGVWERPMGLQGIWGSIIEDWLDRLLPDDAALRVDDGCLHILVTPV--PSFGKSRVSNFEDRSDLIRANMASVHLPWFLDSNLTTHFRGRACIDGSFLASPSDYLSDRDQDRQRLVLDFKRDPVMKDKAGEFIKVVSPQAIWDILDRGKEYARIMERSGEFACLE 267          
BLAST of mRNA_E-siliculosus-1a_F_contig1350.2093.1 vs. uniprot
Match: A0A7S0MR98_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MR98_9CRYP)

HSP 1 Score: 173 bits (438), Expect = 2.730e-47
Identity = 91/230 (39.57%), Postives = 127/230 (55.22%), Query Frame = 3
Query:  249 SPAALPPSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPR--PFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSF----RASREDLSLGDDRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHV 920
            SP++      P++ FPGGGI+FWWQAG + ALQERY++      GASAG+L A               A  L   N +W R  GL G+WG+++ +WLD +LP++   +CR RV + V  +     P +RR+V DF +K DL++AC+ASVHIP+F+D    + HRG   VDGS     R         +  P +  D+  DE + ARR  FL   +Q+    M Q GY HV
Sbjct:   33 SPSSQITDQPPLIVFPGGGIYFWWQAGAVKALQERYDIDKCSLTGASAGALIAVLAGCKIDMDYALQVAERLAVQNGVWGRACGLMGIWGSIIYEWLDIILPENAAELCRGRVSVSVTSVHSSFPPLKRRSVGDFGTKRDLMQACLASVHIPFFLDGRLFSGHRGAACVDGSLTFVLRGKPWHFRPDEPEPALLVDHRTDEALMARRWGFLQTISQDAFRHMYQLGYAHV 262          
BLAST of mRNA_E-siliculosus-1a_F_contig1350.2093.1 vs. uniprot
Match: L1IQE7_GUITC (PNPLA domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IQE7_GUITC)

HSP 1 Score: 171 bits (433), Expect = 5.880e-47
Identity = 89/238 (37.39%), Postives = 133/238 (55.88%), Query Frame = 3
Query:  264 PPSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWP-----RPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSF----RASREDLSLGDDRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLD 950
            P   +P++ FPGGGI+FWWQAGV+  LQ+R N+ S DF GASAGSL+A               A  L +   +WTR  GLAG+WG M+  WLDELLP++   IC DRV ++ + +        P +R++++ F +K DLI+ACMASVH+P F+D   S    G   VDGS     R         D +P++   + +D+ + AR+  FL   + +    M + G ++ + M+ +  L+
Sbjct:   12 PSDSRPLIVFPGGGIYFWWQAGVVQGLQKRINVDSFDFTGASAGSLSAVFAACGVDMMQAFHLAQKLAEEKNVWTRKEGLAGIWGDMIYQWLDELLPENAAEICTDRVDMVAVSVTSVRLSFLPLKRKSITRFKTKKDLIEACMASVHVPMFLDGKMSRSLDGDICVDGSITFVLRNKPWHFKPQDRKPSLMIHHQDDKELMARKWNFLETISLDQFEEMFEMGQKYAEEMIDKKTLE 249          
BLAST of mRNA_E-siliculosus-1a_F_contig1350.2093.1 vs. uniprot
Match: A0A7S4C0Y1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0Y1_CHRCT)

HSP 1 Score: 170 bits (430), Expect = 3.100e-46
Identity = 105/243 (43.21%), Postives = 141/243 (58.02%), Query Frame = 3
Query:  279 PVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPL-GLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPRP----FRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFR----ASREDLSLGDDRPTVYFDYDEDEVMA---ARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLDCIKEAAL 971
            P L+FPGGGIFFWWQAG ++AL ER++L+ +  VGASAG+LAA               A DL D + ++ R   GL GVWG MV +WLDELLP D DV+CR RVH+LV  + PR     F    +SD+ S++DLI   +AS H+P F+D  ++AR RG R VDGS      +S   + L    P V  D   D  M    +RR  FL L +++G+  M + G +HV  M  +G L+ +   AL
Sbjct:   38 PGLAFPGGGIFFWWQAGAVAALNERFDLARVPCVGASAGALAATIAATKVDPHRALDIAADLADRHGVYDRGAWGLYGVWGPMVREWLDELLPKDADVMCRGRVHILVKRV-PRLRHPYFEPVMLSDYRSRADLIDVNLASAHVPLFLDGRWTARLRGMRCVDGSLSLRPDSSLRRVVLPGRAPVVRIDSSGDLRMRERYSRREDFLRLASRDGVEEMLEWGVKHVAQMERDGALELLAPYAL 279          
BLAST of mRNA_E-siliculosus-1a_F_contig1350.2093.1 vs. uniprot
Match: A0A7S2IAY4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAY4_9STRA)

HSP 1 Score: 170 bits (431), Expect = 7.560e-46
Identity = 98/232 (42.24%), Postives = 131/232 (56.47%), Query Frame = 3
Query:  291 FPGGGIFFWWQAGVISALQER-YNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASRED---------LSLGDDRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLDCI 956
            FPGGGIFF+WQAG  S L+E  Y+LSS+   GASAG+L A               AL L +   +W RPLGL GVWG M+E WL++LLP++   +  DR+ LLV  I    FR   +S F SK DL+K  MASVH+PWF+D   ++  R   +VDGSFRA   D         LS  DD   +  D+  D +M  +   F++LT++EG+  + +RG  H + M   G  D I
Sbjct:   94 FPGGGIFFYWQAGAASYLREAGYDLSSVRMSGASAGALVATLTLTDVDFDEATRLALSLAEEAGVWERPLGLQGVWGPMIETWLNDLLPENAVEMVDDRLSLLVTAI--PSFRTDRISSFNSKEDLVKCNMASVHLPWFLDGKLTSNFRDAPHVDGSFRAKPNDYFPELNGQELSEDDDS-LIILDWKADPIMKGKAKDFVTLTSKEGIWGLVERGRSHAKIMDKRGAFDGI 322          
BLAST of mRNA_E-siliculosus-1a_F_contig1350.2093.1 vs. uniprot
Match: A0A6U3R5T6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R5T6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.060e-45
Identity = 95/231 (41.13%), Postives = 131/231 (56.71%), Query Frame = 3
Query:  291 FPGGGIFFWWQAGVISALQER-YNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASRED----LSLGD-DRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLDCIKEA 965
            FPGGGIFF+WQAG  S L+E  Y+LS +   GASAG+LAA               AL L +   +W RPLGL GVWG M+E WL++LLPD+   +  +R+ LLV  I    FR   +S F SK DL++  MASVH+PWF+D   ++  R    +DGSFRA  ED    +  G  D   +  D+  D VM  +   F+ LT++EG+  + ++G  + Q M   G  D I ++
Sbjct:   86 FPGGGIFFYWQAGAASYLREAGYDLSDVTMSGASAGALAATLTLADVDFEEATSLALKLAEDAGVWDRPLGLQGVWGPMIETWLNDLLPDNAVEMVDERLSLLVTSI--PSFRTDRISSFESKEDLVRCNMASVHLPWFLDGKLTSNFRQAPRIDGSFRAKTEDYFPQVKNGQVDDSLIILDWKSDPVMEGKTKDFIKLTSKEGIWDLLEQGRSYAQIMDKRGDFDTISQS 314          
BLAST of mRNA_E-siliculosus-1a_F_contig1350.2093.1 vs. uniprot
Match: A0A7S4JAL6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAL6_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.290e-43
Identity = 98/262 (37.40%), Postives = 143/262 (54.58%), Query Frame = 3
Query:  186 PAALRRRLTLSAGSDDEGIVASPAALPPSGKPVLSFPGGGIFFWWQAGVISALQER-YNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPRP-FRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASREDLSLGDDRP--TVYFDYDEDEVMAARR-GKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLDCI 956
            P+A  RRL ++  S  E    S         P L FPGGGIFF+WQAG ++ L+E  Y+LSS+   GASAG+L A               AL       +W RPLGL GVWG+++E WLD+LLP D      D   L ++ + P P F +  V+DF  +SDLI+A MAS+HIPWF+D   + R+R   ++DGSF +   D  + + RP   V  D+ +D  M+ ++ G F+   ++EG+  + +RG  +   M   G  + +
Sbjct:   64 PSAEERRLQMATSSASESSSTSEGKR--ERAPQLIFPGGGIFFYWQAGAVTHLRESGYDLSSVSMSGASAGALTATLAATGVDFLDATDLALQFAQEAGVWDRPLGLQGVWGSLIERWLDDLLPPDAHATANDGPGLQLL-VTPVPSFGKTKVTDFRDRSDLIRANMASIHIPWFLDGKLTTRYRDAEHIDGSFLSKATDY-VTEVRPKNVVRLDWTKDPAMSDKKLGDFVEALSKEGIWDLVERGKSYAALMEERGDFESL 321          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1350.2093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGY0_9PHAE1.840e-20995.34PNPLA domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S0MNQ6_9CRYP4.140e-5142.92Hypothetical protein (Fragment) n=2 Tax=Cryptomona... [more]
A0A388K383_CHABU1.910e-4944.58Patatin n=1 Tax=Chara braunii TaxID=69332 RepID=A0... [more]
K0TQT9_THAOC2.790e-4841.13PNPLA domain-containing protein n=1 Tax=Thalassios... [more]
A0A7S0MR98_9CRYP2.730e-4739.57Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
L1IQE7_GUITC5.880e-4737.39PNPLA domain-containing protein n=1 Tax=Guillardia... [more]
A0A7S4C0Y1_CHRCT3.100e-4643.21Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2IAY4_9STRA7.560e-4642.24Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6U3R5T6_9STRA3.060e-4541.13Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4JAL6_9STRA2.290e-4337.40Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1350contigE-siliculosus-1a_F_contig1350:6410..10092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size969
Model size1285
Exons6
Ec32 orthologEc-10_004960.1
Ec32 ortholog descriptionPatatin/Phospholipase A2-related
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG3773@1,KOG3773@2759
EggNOG free text desc.triglyceride catabolic process
Seed eggNOG ortholog2880.D7FNZ7
Seed ortholog evalue3.4e-164
Seed ortholog score584.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1350.2093.1prot_E-siliculosus-1a_F_contig1350.2093.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1350 6457..9823 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927865.7425885-UTR-E-siliculosus-1a_F_contig1350:6409..64561622927865.7425885-UTR-E-siliculosus-1a_F_contig1350:6409..6456Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1350 6410..6456 +
1696318714.8839967-UTR-E-siliculosus-1a_F_contig1350:6409..64561696318714.8839967-UTR-E-siliculosus-1a_F_contig1350:6409..6456Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1350 6410..6456 +
1622927866.0108209-UTR-E-siliculosus-1a_F_contig1350:9823..100921622927866.0108209-UTR-E-siliculosus-1a_F_contig1350:9823..10092Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1350 9824..10092 +
1696318714.9490817-UTR-E-siliculosus-1a_F_contig1350:9823..100921696318714.9490817-UTR-E-siliculosus-1a_F_contig1350:9823..10092Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1350 9824..10092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927865.905934-CDS-E-siliculosus-1a_F_contig1350:6456..67261622927865.905934-CDS-E-siliculosus-1a_F_contig1350:6456..6726Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1350 6457..6726 +
1696318714.8955355-CDS-E-siliculosus-1a_F_contig1350:6456..67261696318714.8955355-CDS-E-siliculosus-1a_F_contig1350:6456..6726Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1350 6457..6726 +
1622927865.9200304-CDS-E-siliculosus-1a_F_contig1350:7266..74281622927865.9200304-CDS-E-siliculosus-1a_F_contig1350:7266..7428Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1350 7267..7428 +
1696318714.9035017-CDS-E-siliculosus-1a_F_contig1350:7266..74281696318714.9035017-CDS-E-siliculosus-1a_F_contig1350:7266..7428Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1350 7267..7428 +
1622927865.938169-CDS-E-siliculosus-1a_F_contig1350:7801..79181622927865.938169-CDS-E-siliculosus-1a_F_contig1350:7801..7918Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1350 7802..7918 +
1696318714.9137259-CDS-E-siliculosus-1a_F_contig1350:7801..79181696318714.9137259-CDS-E-siliculosus-1a_F_contig1350:7801..7918Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1350 7802..7918 +
1622927865.9538915-CDS-E-siliculosus-1a_F_contig1350:8468..86141622927865.9538915-CDS-E-siliculosus-1a_F_contig1350:8468..8614Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1350 8469..8614 +
1696318714.926547-CDS-E-siliculosus-1a_F_contig1350:8468..86141696318714.926547-CDS-E-siliculosus-1a_F_contig1350:8468..8614Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1350 8469..8614 +
1622927865.973306-CDS-E-siliculosus-1a_F_contig1350:9300..93651622927865.973306-CDS-E-siliculosus-1a_F_contig1350:9300..9365Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1350 9301..9365 +
1696318714.9338667-CDS-E-siliculosus-1a_F_contig1350:9300..93651696318714.9338667-CDS-E-siliculosus-1a_F_contig1350:9300..9365Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1350 9301..9365 +
1622927865.9925342-CDS-E-siliculosus-1a_F_contig1350:9614..98231622927865.9925342-CDS-E-siliculosus-1a_F_contig1350:9614..9823Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1350 9615..9823 +
1696318714.9412253-CDS-E-siliculosus-1a_F_contig1350:9614..98231696318714.9412253-CDS-E-siliculosus-1a_F_contig1350:9614..9823Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1350 9615..9823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1350.2093.1

>prot_E-siliculosus-1a_F_contig1350.2093.1 ID=prot_E-siliculosus-1a_F_contig1350.2093.1|Name=mRNA_E-siliculosus-1a_F_contig1350.2093.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=323bp
MRGFRTMVALNNVLHVGAFLLPISSVLRGNMAPKSTFLPSPAGTPDPAAL
RRRLTLSAGSDDEGIVASPAALPPSGKPVLSFPGGGIFFWWQAGVISALQ
ERYNLSSLDFVGASAGSLAATLAACDADMDLAMKLALDLCDTNEIWTRPL
GLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPRPFRRRAVSDF
TSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASREDLSLGDD
RPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKL
DCIKEAALPLQKNTAGGLTEKD*
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mRNA from alignment at E-siliculosus-1a_F_contig1350:6410..10092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1350.2093.1 ID=mRNA_E-siliculosus-1a_F_contig1350.2093.1|Name=mRNA_E-siliculosus-1a_F_contig1350.2093.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3683bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1350:6410..10092+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGCACCAATCTCGCCGCCCGTGGGGCCACCCTGGCGGCTAGCAGCATG CGCGGCTTCAGGACGATGGTAGCGCTCAACAACGTCCTTCACGTGGGCGC CTTCCTTTTGCCAATCTCCTCTGTTCTACGCGGCAACATGGCGCCGAAAT CGACCTTTCTCCCCTCTCCCGCGGGGACACCTGATCCCGCCGCGTTGCGG AGACGGTTGACGTTGTCAGCAGGCTCCGACGACGAGGGCATCGTCGCGTC TCCTGCTGCCTTACCACCATCCGGCAAGCCAGTACTGAGCTTTCCCGGGG GTGGGATTTTCTTTTGGGTGAGCCCCTTTGCCTGGAGTATCTACTGTACG ACAAGCTCAATTTACATGCAGCGCGGCGTTGTACGGCAGCAGCAGCGAGC ATCGCGCCAACAAGCCCGACACGGTGTGTGAGAGCGATGGCAGTGCGGAC AAAGGCTGGCAATGCAGAATGCACACAGGATCAGTATCTTCGCCCAACTT GCACTACCTCCGTAACCCCCAAACGAACGCTCGACCACACTGACCGGCGA TGATGCAGCAGTATACAGACACCCTATGTTCAAGGTACATGTACTGCAGA GGACCAAGCCGTTACAGCAGTAGTAGATATCATGTCGTATGCAAAGTTGT TCTGGGGTGTCGATCAATCGCACTATGGTGACCTCGAAAGCATAAAAAAC TTGGGATCAGGGCGACCACGACACAGCTCATACACATACTCTTCATGTTG CTGGGCGCTACGCCCACACTCGTCTCGTCGTTTCCGAGACTGTCGTCAGC TTGAGGTAACCCCTTCCTCCGACCGTCCGTGCTCTCCCCCTTTGCTTGCT TGACCAGTGGCAAGCGGGTGTCATTAGCGCGTTGCAGGAGCGTTACAACC TATCGTCCCTCGATTTTGTCGGTGCTTCGGCGGGGTCACTCGCGGCCACG CTTGCCGCTTGTGACGCGGATATGGATCTCGCCATGAAGTTGGCTCTCGA CCTCTGCGATACGAACGAGGTAACGGCGTGGTGCACAGCGCGCAGGGAGC AACGGCGGCACTGATGACAGTGGGGTAGTTGTTCCGCCCTCACGCGTGTA CACTATTTCTTGAGGTCTCGCCCCGACACGAGACGATCGAGGTCACCGTG CAGTGTACCCTCTGCCCAAGCGACTAGGTAGAAGAGACCCAAGTCAGGTC TATTTGTAGTGGACCTCCCTCCTCTCAGCCAGGCACCTCGGCTGTGCTGT GATGTTGAATGTGATCATGTCTTGTCTCTGCCACCCAACGTCCATGGATC ACCAGGACCAGCTCGAGCTGGCCACTTACATTTCTAGTTGTTCACATGTT CAACGCTATTGTCCTGGCGATGCACGTCGTGCGTCACCGCAGATTTGGAC CCGACCGCTGGGACTTGCCGGTGTGTGGGGCGCGATGGTGGAGGACTGGC TCGACGAGCTGCTCCCAGACGACGTGGACGTTATCTGTCGAGACCGCGTG CATTTATTGGTGGGTGCGATTTCACGAAGAAGCGCTGCTGGTCGGCGAAC AAACTCAAAGATAACCGCTACGCGCCTCGCACCTGGTGTATCAGGGAACT ATTATTCTTGCTTCGGCGTCAGGACGTGCTTGTGCCTCCTGTACAGTATC GAAAACAACTGGAAATGTTTCATCAAGCAAGCAAGGGTTCACGTTTGGGG TGGGGGAGATATGAGTGCTTCCTGAAGTGATTCATTCCCGCCGTCAGGCC ACTCGCCTCTATAGACAGATGCAGCCTTCGCCACCGCCGGGTTGTGGCCG TTGGTTTGGCCACCGATGGAGCTGTGCCTACTTGCAACATCTTAACGTTC TGGGTTGCAGGACGCCGTACGTTCCATACTATGTAGAGGACCTGAAAATT CTATTCCGCATTCTGCTTGTCATCGACAGCACGTAGGTTTTGGGCAGATT GTTCGCAATCTCTTCCAGTTTGGTCGGAAAGCTTACCTCTCTATCGATCC ATACGTTCCGAAACAATTTCTCGTGTCCAAAATGTGGGGTTTTGAATCTT CTACATCAGGTGATAGGGATCTGGCCCAGACCGTTCAGGCGACGAGCGGT GTCGGACTTCACGAGCAAGAGTGATCTGATCAAGGCGTGCATGGCCTCCG TACACATCCCTTGGTTCATGGACAAGCACTTCTCGGCACGACATAGGGGG GGGCGGTACGTAATCGGCACATACGTACACGGTTCTAGAGTTTGTAATAT TCCCCGAAGGAAGCCTGACCAGCACGCCGTGGCTGTCTGTGCCGGTGTGT TGTAACACGCTGCTACGCTGCAGGTCTTCATTTTGGGGCTTTGGTTATAG CTTGTTGCAACTTATTGCTTGCTCGTATGGTTGGCGGACTCGAGGAATGA CCCCCAACTGTCCGCCGCAGCCCGTAAACGCATCTCGTGTGCAAGGCAGA GGTACTCGTTTTGGAGACTCCACGTTTTTGTGGCAGGTTTTTCGGCCAAG CCATTGCGTTTGTGCAACAACAGAGTAGGCGTACCTGGCGGGGTGCCACG CACGAAGACATCGGCACTGTGCGAAATGCTATATAGAAAAGGTGTTTGTG GCTCCATGTCAGAGCTCGAATCTCGAAACATTCCCAGAAAAAAATGCCAA CCGTTCTGCGCTCGACCAAGGAATGTGATCCCCTCCAGGCTTGACGCCCC CCTGATCCCCCGCCTTGCCGTGTCGTTGACATTGCGTTTCGCTCCCTTTG GGTTTTCCGGGGTGCAATACAGCAGTACAGCTGGTGTAGCGGCCCATTCT GCGGCGTCAAAATGATGATGTTTTTTTCCGAGGTTCTGGTATTGTCGTTC ACCCTTGAGACCTTCCTCAACCGACCGCCTCTCGTCGCCAGGTACGTCGA CGGTTCCTTCAGGGCGAGCCGCGAAGACCTATCGCTGGGAGACGACAGAC CAACAGGTGAGGAGCACCATTTTCATAAAAGAAGGGCGCAAAGGCACACA AATTCTGTACCAAATGTGGTGAACGAGCACGTTCTGTTTCACGAAACGCG AAACCGCAAACTGCAGGCTTGAGACACAAGCTTCCGAGAGACGCAAGCTT CGCGAGAAACAGTGCATTATTTGGTGTTGGTTTTACCTCCAACAGCCCGA TTGACGCCCTTGCGGCACCCTTTCCTCAACATGTCCTTGCTCTCAATCGT TCAAGTGTACTTCGACTACGATGAAGACGAGGTGATGGCAGCGAGGCGAG GCAAGTTCCTGAGCCTCACGAACCAGGAAGGGTTGTTGTTCATGAGGCAA AGGGGCTACGAGCACGTGCAGACGATGCTGGCGGAGGGAAAGCTCGACTG TATCAAAGAGGCGGCCCTACCTTTGCAGAAGAACACTGCCGGAGGATTGA CCGAGAAAGACTAGCGCGGGTCTGCTATTCATCGTCGAGGGAGAACGCAG AAGCCGGCGGTTTTGCACGAGTCGGGGAGAGAGCGCACCCTTTCTGCGTC AAGAAATCAGAAACCGGACAGTTGTGGCAATTCATGTCTTGTCTTTTCCT TTGCTAACTCCTGGAGACACTCACTTCCTGCCGGCGTTTGCGTGCTGCCG CGAGTGGTCCGGGAATCGTACTGAGCTGCGACACGAGACTGACGCGTTGT CGCAGTGTTGTTTTTTCCCGCGGTACATGATGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1350:6410..10092+

>mRNA_E-siliculosus-1a_F_contig1350.2093.1 ID=mRNA_E-siliculosus-1a_F_contig1350.2093.1|Name=mRNA_E-siliculosus-1a_F_contig1350.2093.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1938bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1350:6410..10092+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCGGCTTCAGGACGATGGTAGCGCTCAACAACGTCCTTCACGTGGG
CGCCTTCCTTTTGCCAATCTCCTCTGTTCTACGCGGCAACATGGCGCCGA
AATCGACCTTTCTCCCCTCTCCCGCGGGGACACCTGATCCCGCCGCGTTG
CGGAGACGGTTGACGTTGTCAGCAGGCTCCGACGACGAGGGCATCGTCGC
GTCTCCTGCTGCCTTACCACCATCCGGCAAGCCAGTACTGAGCTTTCCCG
GGGGTGGGATTTTCTTTTGGATGCGCGGCTTCAGGACGATGGTAGCGCTC
AACAACGTCCTTCACGTGGGCGCCTTCCTTTTGCCAATCTCCTCTGTTCT
ACGCGGCAACATGGCGCCGAAATCGACCTTTCTCCCCTCTCCCGCGGGGA
CACCTGATCCCGCCGCGTTGCGGAGACGGTTGACGTTGTCAGCAGGCTCC
GACGACGAGGGCATCGTCGCGTCTCCTGCTGCCTTACCACCATCCGGCAA
GCCAGTACTGAGCTTTCCCGGGGGTGGGATTTTCTTTTGGTGGCAAGCGG
GTGTCATTAGCGCGTTGCAGGAGCGTTACAACCTATCGTCCCTCGATTTT
GTCGGTGCTTCGGCGGGGTCACTCGCGGCCACGCTTGCCGCTTGTGACGC
GGATATGGATCTCGCCATGAAGTTGGCTCTCGACCTCTGCGATACGAACG
AGTGGCAAGCGGGTGTCATTAGCGCGTTGCAGGAGCGTTACAACCTATCG
TCCCTCGATTTTGTCGGTGCTTCGGCGGGGTCACTCGCGGCCACGCTTGC
CGCTTGTGACGCGGATATGGATCTCGCCATGAAGTTGGCTCTCGACCTCT
GCGATACGAACGAGATTTGGACCCGACCGCTGGGACTTGCCGGTGTGTGG
GGCGCGATGGTGGAGGACTGGCTCGACGAGCTGCTCCCAGACGACGTGGA
CGTTATCTGTCGAGACCGCGTGCATTTATTGATTTGGACCCGACCGCTGG
GACTTGCCGGTGTGTGGGGCGCGATGGTGGAGGACTGGCTCGACGAGCTG
CTCCCAGACGACGTGGACGTTATCTGTCGAGACCGCGTGCATTTATTGGT
GATAGGGATCTGGCCCAGACCGTTCAGGCGACGAGCGGTGTCGGACTTCA
CGAGCAAGAGTGATCTGATCAAGGCGTGCATGGCCTCCGTACACATCCCT
TGGTTCATGGACAAGCACTTCTCGGCACGACATAGGGGGGGGCGGTGATA
GGGATCTGGCCCAGACCGTTCAGGCGACGAGCGGTGTCGGACTTCACGAG
CAAGAGTGATCTGATCAAGGCGTGCATGGCCTCCGTACACATCCCTTGGT
TCATGGACAAGCACTTCTCGGCACGACATAGGGGGGGGCGGTACGTCGAC
GGTTCCTTCAGGGCGAGCCGCGAAGACCTATCGCTGGGAGACGACAGACC
AACAGGTACGTCGACGGTTCCTTCAGGGCGAGCCGCGAAGACCTATCGCT
GGGAGACGACAGACCAACAGTGTACTTCGACTACGATGAAGACGAGGTGA
TGGCAGCGAGGCGAGGCAAGTTCCTGAGCCTCACGAACCAGGAAGGGTTG
TTGTTCATGAGGCAAAGGGGCTACGAGCACGTGCAGACGATGCTGGCGGA
GGGAAAGCTCGACTGTATCAAAGAGGCGGCCCTACCTTTGCAGAAGAACA
CTGCCGGAGGATTGACCGAGAAAGACTAGTGTACTTCGACTACGATGAAG
ACGAGGTGATGGCAGCGAGGCGAGGCAAGTTCCTGAGCCTCACGAACCAG
GAAGGGTTGTTGTTCATGAGGCAAAGGGGCTACGAGCACGTGCAGACGAT
GCTGGCGGAGGGAAAGCTCGACTGTATCAAAGAGGCGGCCCTACCTTTGC
AGAAGAACACTGCCGGAGGATTGACCGAGAAAGACTAG
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