mRNA_E-siliculosus-1a_F_contig135.2088.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI) HSP 1 Score: 342 bits (876), Expect = 1.250e-110 Identity = 183/265 (69.06%), Postives = 213/265 (80.38%), Query Frame = 1
Query: 1 LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEEVIVRSPVA-AFAHDSGLPSRA 792
LKHTED V+RKEL LPPF + YY+AVRSGLC AYLAASV+DSNWVSTSKTG MGK GAALKL+SGAVP++GGLP LAGKALE GD YLQTRRLVKI AMAPD +ECCSLARRLALQLTDGL+++ SA D+ ++V V+T AG SG +G D+M MSE+DVF+YLL EV +YE DHGGK+LGKKHLRKLL+AIQ GCLDGS+ T QK+++L+L ILPEA + AT TP+EV+VRSP A A AHDSGLPSRA
Sbjct: 231 LKHTEDMSVRRKELALPPFSKEYYSAVRSGLCQAYLAASVIDSNWVSTSKTGGMGKVGAALKLMSGAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAG---------GSGCGRGADMMPGDMSEEDVFKYLLEEVTAYERNDHGGKRLGKKHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRA 486
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI) HSP 1 Score: 339 bits (870), Expect = 9.860e-108 Identity = 185/265 (69.81%), Postives = 207/265 (78.11%), Query Frame = 1
Query: 1 LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEEVIVRSP-VAAFAHDSGLPSRA 792
L+HTED ++QRKEL LP F AYY+AVRSGLC AYLAASV+DS+WVSTSKTG MGK GAA+KL+S AVPVVGGLP LAGKALE GD YLQTRRLVKI AMA DA++CC LARRLALQLTDGL++D A AD DEVRV T AGM + G D+ MSE+DVFEYLL EVASY+ DHGG +LGKKHLRKLL+AIQRG LDGS+ TEQK+EVLVL ILPEA AT +TP+EVIVRSP V AHD GLPSRA
Sbjct: 476 LRHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTGGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLALQLTDGLRNDAGATADNADEVRVDTTAGM------------NGGADMTPGDMSEEDVFEYLLEEVASYKRNDHGGVRLGKKHLRKLLKAIQRGSLDGSNGTEQKIEVLVLKILPEADTSLAATLSTPKEVIVRSPPVVTPAHDGGLPSRA 728
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 344 bits (882), Expect = 3.810e-107 Identity = 188/265 (70.94%), Postives = 207/265 (78.11%), Query Frame = 1
Query: 1 LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEEVIVRSPVA-AFAHDSGLPSRA 792
L HTED DVQRKEL L PF +AYYTAVRSGLC+AYLAASV+DS+WVSTSKTG MGKGG AL LLS AVPV+ GL GLAGKAL TGD YLQTRRL KI AMA D MECCSLARRLALQLTDGLKDDT DE D+V HT AGM G SGS + DI+ D + EDDVFE+LL EVA YE DHGGK+LGKKHLRKLL+AIQRGCLDGSS +QKME+L+L ILPEA IR TS +P+EVIV+SP A A H+ LPS A
Sbjct: 543 LSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHYLQTRRLAKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDETDQVCTHTTAGMN------GGSGSGRDADILPDIIIEDDVFEHLLEEVARYERSDHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMELLLLEILPEADIRTSETSISPKEVIVQSPPALAPTHNGTLPSMA 801
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE) HSP 1 Score: 342 bits (878), Expect = 3.330e-106 Identity = 189/265 (71.32%), Postives = 203/265 (76.60%), Query Frame = 1
Query: 1 LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEEVIVRSPVA-AFAHDSGLPSRA 792
L HTED DVQRKEL L PF +AYYTAVRSGLC+AYLAASV+DS+WVST KTG MGKGG AL LLS AVPV+ GL GLAGKAL TGD LQTRRLVKI AMA D MECCSLARRLALQLTDGLKDDT DE D+V H AGM G SGS + DI D M EDDVFEYLL EVA YE DHGGK+LGKKHLRKLL+AIQRGCLDGSS +QKME L+L ILP A IR TS+TP++VIVRSP A A HD LPS A
Sbjct: 503 LSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDEADQVYTHITAGMN------GGSGSGRDADISPDDMIEDDVFEYLLEEVARYERSDHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMEALLLEILPGADIRTSETSSTPKKVIVRSPPALAPTHDGRLPSMA 761
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI) HSP 1 Score: 331 bits (849), Expect = 1.340e-104 Identity = 177/265 (66.79%), Postives = 211/265 (79.62%), Query Frame = 1
Query: 1 LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEEVIVRSPVA-AFAHDSGLPSRA 792
L+HTED +VQRKEL LPPF +AYYTA+R+GLC AYLAAS +DS+WV TSKTG MGK GAALKL+S AVP++GGLP LAGKALE GD YLQTRRLVKI AMAPD +ECCSLARRLALQLTDGL+++ SA D+ ++V V+T AG SG +G D+M MSE+DVF+YLL EV + E DHGGK+LGK+HLRKLL+AIQ GCLDGS+ T QK+++L+L ILPEA + AT TP+EV+VRSP A A AHDSGLPSRA
Sbjct: 426 LRHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTGGMGKVGAALKLMSSAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAG---------GSGCGRGADMMPGDMSEEDVFKYLLEEVTADERNDHGGKRLGKRHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRA 681
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI) HSP 1 Score: 327 bits (837), Expect = 5.370e-104 Identity = 181/275 (65.82%), Postives = 211/275 (76.73%), Query Frame = 1
Query: 1 LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQK----------MEVLVLVILPEAAIRRGATSTTPEEVIVRS-PVAAFAHDSGLPSRA 792
LKHTED DV+R+ELTLPPF +AYYTAVR+G+C+AYLAASV+DS+WVSTSKTG MGK GAALK++S A+PVVGG GLAGKA+++GD YLQTRRLVKI AMA DA+ECCSLARRLALQL GL++D +A A+E D +R AGM G SGS QG + + MSE DVFEY+L EVAS H DHGGK+LGKKHLRKLL+A+QRGCLDG S TEQK M VL+L ILPEA IR ATS+ +EVIV+S PV AHDSG PS A
Sbjct: 388 LKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTGGMGKAGAALKVMSRAIPVVGGPTGLAGKAMKSGDHYLQTRRLVKITAMAHDAIECCSLARRLALQLAGGLRNDANAGANEVDHIRADITAGMN------GGSGSGQGPNSLPAIMSEGDVFEYVLKEVASCGHNDHGGKRLGKKHLRKLLKAVQRGCLDGLSCTEQKARTRMSSRQQMAVLLLEILPEADIRHAATSSLLKEVIVKSLPVVGAAHDSGSPSMA 656
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI) HSP 1 Score: 221 bits (562), Expect = 2.070e-62 Identity = 125/253 (49.41%), Postives = 166/253 (65.61%), Query Frame = 1
Query: 4 KHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRD----------HGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEE 732
+H + D+QR+EL LPP +AYYTA+R+GLC+AYLAASV+ S+ V TSKTGRMG G L+ LS AVPVV GL GLA AL+ GD+YLQTRR+ KI MAPD+ +CC LAR LALQL+DG D T D +E HT AGM G G G SQ + D+ +E+ V ++ + EVA YE G+KLG +HL+ LL+A+ R CL G+++ ++K++VLV +ILPEA + G+TS +E
Sbjct: 504 RHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGM---GGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTQE 753
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI) HSP 1 Score: 219 bits (559), Expect = 4.660e-62 Identity = 125/253 (49.41%), Postives = 166/253 (65.61%), Query Frame = 1
Query: 4 KHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRD----------HGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEE 732
+H + D+QR+EL LPP +AYYTA+R+GLC+AYLAASV+ S+ V TSKTGRMG G L+ LS AVPVV GL GLA AL+ GD+YLQTRR+ KI +APD+ +CC LAR LALQL+DG D T D +E H AGM G G G SQ + D+ +E+ V ++ + EVA YE + G+KLGK+HL+ LL+A+ R CL G+++ ++K++VLV +ILPEA R G+TS E
Sbjct: 477 RHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGM---GGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHVTRE 726
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI) HSP 1 Score: 219 bits (558), Expect = 1.550e-61 Identity = 124/248 (50.00%), Postives = 165/248 (66.53%), Query Frame = 1
Query: 4 KHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRD----------HGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATS 717
+H + D+QR+EL LPP +AYYTA+R+GLC+AYLAASV+ S+ V TSKTGRMG G L+ LS AVPVV GL GLA AL+ GD+YLQTRR+ KI +APD+ +CC LAR LALQL+DG D T D +E HT AGM G G G SQ + D+ +E+ V ++ + EVA YE + G+KLG +HL+ LL+A+ R CL G+++ ++K++VLV +ILPEA R G+TS
Sbjct: 689 RHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGAAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGM---GGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTS 933
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: A0A6H5JSF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE) HSP 1 Score: 167 bits (422), Expect = 5.680e-48 Identity = 96/191 (50.26%), Postives = 120/191 (62.83%), Query Frame = 1
Query: 4 KHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKK 576
+H + +QR+EL LPP +AYY A+R+GLC+AYLAASV+ S+ V TSKTGRMG G LK LS AVPVVGGL GLA AL GD+YLQTRR+ KI +APD+ CCSLAR LALQL+DG D D +E HT AG G SQ + D +E+ V ++ + EVA YE + +K
Sbjct: 9 RHVVNEAIQRRELALPPGPKAYYMAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLKFLSSAVPVVGGLAGLAAAALNAGDRYLQTRRVSKICDIAPDSAGCCSLARTLALQLSDGYVDGALPTTDTAEERGTHTTAG---------GGGWSQDIGASPDPATEEAVMDWFVEEVADYEPNNLDARK 190 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig135.2088.1 >prot_E-siliculosus-1a_F_contig135.2088.1 ID=prot_E-siliculosus-1a_F_contig135.2088.1|Name=mRNA_E-siliculosus-1a_F_contig135.2088.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=264bp LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKback to top mRNA from alignment at E-siliculosus-1a_F_contig135:57294..59411+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig135.2088.1 ID=mRNA_E-siliculosus-1a_F_contig135.2088.1|Name=mRNA_E-siliculosus-1a_F_contig135.2088.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2118bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:57294..59411+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig135:57294..59411+ >mRNA_E-siliculosus-1a_F_contig135.2088.1 ID=mRNA_E-siliculosus-1a_F_contig135.2088.1|Name=mRNA_E-siliculosus-1a_F_contig135.2088.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1584bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:57294..59411+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |