mRNA_E-siliculosus-1a_F_contig135.2088.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig135.2088.1
Unique NamemRNA_E-siliculosus-1a_F_contig135.2088.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 1.250e-110
Identity = 183/265 (69.06%), Postives = 213/265 (80.38%), Query Frame = 1
Query:    1 LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEEVIVRSPVA-AFAHDSGLPSRA 792
            LKHTED  V+RKEL LPPF + YY+AVRSGLC AYLAASV+DSNWVSTSKTG MGK GAALKL+SGAVP++GGLP LAGKALE GD YLQTRRLVKI AMAPD +ECCSLARRLALQLTDGL+++ SA  D+ ++V V+T AG          SG  +G D+M   MSE+DVF+YLL EV +YE  DHGGK+LGKKHLRKLL+AIQ GCLDGS+ T QK+++L+L ILPEA  +  AT  TP+EV+VRSP A A AHDSGLPSRA
Sbjct:  231 LKHTEDMSVRRKELALPPFSKEYYSAVRSGLCQAYLAASVIDSNWVSTSKTGGMGKVGAALKLMSGAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAG---------GSGCGRGADMMPGDMSEEDVFKYLLEEVTAYERNDHGGKRLGKKHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRA 486          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI)

HSP 1 Score: 339 bits (870), Expect = 9.860e-108
Identity = 185/265 (69.81%), Postives = 207/265 (78.11%), Query Frame = 1
Query:    1 LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEEVIVRSP-VAAFAHDSGLPSRA 792
            L+HTED ++QRKEL LP F  AYY+AVRSGLC AYLAASV+DS+WVSTSKTG MGK GAA+KL+S AVPVVGGLP LAGKALE GD YLQTRRLVKI AMA DA++CC LARRLALQLTDGL++D  A AD  DEVRV T AGM            + G D+    MSE+DVFEYLL EVASY+  DHGG +LGKKHLRKLL+AIQRG LDGS+ TEQK+EVLVL ILPEA     AT +TP+EVIVRSP V   AHD GLPSRA
Sbjct:  476 LRHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTGGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLALQLTDGLRNDAGATADNADEVRVDTTAGM------------NGGADMTPGDMSEEDVFEYLLEEVASYKRNDHGGVRLGKKHLRKLLKAIQRGSLDGSNGTEQKIEVLVLKILPEADTSLAATLSTPKEVIVRSPPVVTPAHDGGLPSRA 728          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 3.810e-107
Identity = 188/265 (70.94%), Postives = 207/265 (78.11%), Query Frame = 1
Query:    1 LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEEVIVRSPVA-AFAHDSGLPSRA 792
            L HTED DVQRKEL L PF +AYYTAVRSGLC+AYLAASV+DS+WVSTSKTG MGKGG AL LLS AVPV+ GL GLAGKAL TGD YLQTRRL KI AMA D MECCSLARRLALQLTDGLKDDT    DE D+V  HT AGM       G SGS +  DI+ D + EDDVFE+LL EVA YE  DHGGK+LGKKHLRKLL+AIQRGCLDGSS  +QKME+L+L ILPEA IR   TS +P+EVIV+SP A A  H+  LPS A
Sbjct:  543 LSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHYLQTRRLAKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDETDQVCTHTTAGMN------GGSGSGRDADILPDIIIEDDVFEHLLEEVARYERSDHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMELLLLEILPEADIRTSETSISPKEVIVQSPPALAPTHNGTLPSMA 801          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 3.330e-106
Identity = 189/265 (71.32%), Postives = 203/265 (76.60%), Query Frame = 1
Query:    1 LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEEVIVRSPVA-AFAHDSGLPSRA 792
            L HTED DVQRKEL L PF +AYYTAVRSGLC+AYLAASV+DS+WVST KTG MGKGG AL LLS AVPV+ GL GLAGKAL TGD  LQTRRLVKI AMA D MECCSLARRLALQLTDGLKDDT    DE D+V  H  AGM       G SGS +  DI  D M EDDVFEYLL EVA YE  DHGGK+LGKKHLRKLL+AIQRGCLDGSS  +QKME L+L ILP A IR   TS+TP++VIVRSP A A  HD  LPS A
Sbjct:  503 LSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDEADQVYTHITAGMN------GGSGSGRDADISPDDMIEDDVFEYLLEEVARYERSDHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMEALLLEILPGADIRTSETSSTPKKVIVRSPPALAPTHDGRLPSMA 761          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 1.340e-104
Identity = 177/265 (66.79%), Postives = 211/265 (79.62%), Query Frame = 1
Query:    1 LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEEVIVRSPVA-AFAHDSGLPSRA 792
            L+HTED +VQRKEL LPPF +AYYTA+R+GLC AYLAAS +DS+WV TSKTG MGK GAALKL+S AVP++GGLP LAGKALE GD YLQTRRLVKI AMAPD +ECCSLARRLALQLTDGL+++ SA  D+ ++V V+T AG          SG  +G D+M   MSE+DVF+YLL EV + E  DHGGK+LGK+HLRKLL+AIQ GCLDGS+ T QK+++L+L ILPEA  +  AT  TP+EV+VRSP A A AHDSGLPSRA
Sbjct:  426 LRHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTGGMGKVGAALKLMSSAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAG---------GSGCGRGADMMPGDMSEEDVFKYLLEEVTADERNDHGGKRLGKRHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRA 681          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 5.370e-104
Identity = 181/275 (65.82%), Postives = 211/275 (76.73%), Query Frame = 1
Query:    1 LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQK----------MEVLVLVILPEAAIRRGATSTTPEEVIVRS-PVAAFAHDSGLPSRA 792
            LKHTED DV+R+ELTLPPF +AYYTAVR+G+C+AYLAASV+DS+WVSTSKTG MGK GAALK++S A+PVVGG  GLAGKA+++GD YLQTRRLVKI AMA DA+ECCSLARRLALQL  GL++D +A A+E D +R    AGM       G SGS QG + +   MSE DVFEY+L EVAS  H DHGGK+LGKKHLRKLL+A+QRGCLDG S TEQK          M VL+L ILPEA IR  ATS+  +EVIV+S PV   AHDSG PS A
Sbjct:  388 LKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTGGMGKAGAALKVMSRAIPVVGGPTGLAGKAMKSGDHYLQTRRLVKITAMAHDAIECCSLARRLALQLAGGLRNDANAGANEVDHIRADITAGMN------GGSGSGQGPNSLPAIMSEGDVFEYVLKEVASCGHNDHGGKRLGKKHLRKLLKAVQRGCLDGLSCTEQKARTRMSSRQQMAVLLLEILPEADIRHAATSSLLKEVIVKSLPVVGAAHDSGSPSMA 656          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 2.070e-62
Identity = 125/253 (49.41%), Postives = 166/253 (65.61%), Query Frame = 1
Query:    4 KHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRD----------HGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEE 732
            +H  + D+QR+EL LPP  +AYYTA+R+GLC+AYLAASV+ S+ V TSKTGRMG  G  L+ LS AVPVV GL GLA  AL+ GD+YLQTRR+ KI  MAPD+ +CC LAR LALQL+DG  D T    D  +E   HT AGM    G  G  G SQ +    D+ +E+ V ++ + EVA YE               G+KLG +HL+ LL+A+ R CL G+++ ++K++VLV +ILPEA  + G+TS   +E
Sbjct:  504 RHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGM---GGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTQE 753          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 4.660e-62
Identity = 125/253 (49.41%), Postives = 166/253 (65.61%), Query Frame = 1
Query:    4 KHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRD----------HGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEE 732
            +H  + D+QR+EL LPP  +AYYTA+R+GLC+AYLAASV+ S+ V TSKTGRMG  G  L+ LS AVPVV GL GLA  AL+ GD+YLQTRR+ KI  +APD+ +CC LAR LALQL+DG  D T    D  +E   H  AGM    G  G  G SQ +    D+ +E+ V ++ + EVA YE  +            G+KLGK+HL+ LL+A+ R CL G+++ ++K++VLV +ILPEA  R G+TS    E
Sbjct:  477 RHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGM---GGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHVTRE 726          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 1.550e-61
Identity = 124/248 (50.00%), Postives = 165/248 (66.53%), Query Frame = 1
Query:    4 KHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRD----------HGGKKLGKKHLRKLLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATS 717
            +H  + D+QR+EL LPP  +AYYTA+R+GLC+AYLAASV+ S+ V TSKTGRMG  G  L+ LS AVPVV GL GLA  AL+ GD+YLQTRR+ KI  +APD+ +CC LAR LALQL+DG  D T    D  +E   HT AGM    G  G  G SQ +    D+ +E+ V ++ + EVA YE  +            G+KLG +HL+ LL+A+ R CL G+++ ++K++VLV +ILPEA  R G+TS
Sbjct:  689 RHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGAAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGM---GGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTS 933          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Match: A0A6H5JSF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 5.680e-48
Identity = 96/191 (50.26%), Postives = 120/191 (62.83%), Query Frame = 1
Query:    4 KHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSKTGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAMAPDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGKIGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKK 576
            +H  +  +QR+EL LPP  +AYY A+R+GLC+AYLAASV+ S+ V TSKTGRMG  G  LK LS AVPVVGGL GLA  AL  GD+YLQTRR+ KI  +APD+  CCSLAR LALQL+DG  D      D  +E   HT AG           G SQ +    D  +E+ V ++ + EVA YE  +   +K
Sbjct:    9 RHVVNEAIQRRELALPPGPKAYYMAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLKFLSSAVPVVGGLAGLAAAALNAGDRYLQTRRVSKICDIAPDSAGCCSLARTLALQLSDGYVDGALPTTDTAEERGTHTTAG---------GGGWSQDIGASPDPATEEAVMDWFVEEVADYEPNNLDARK 190          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig135.2088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7G1L2_ECTSI1.250e-11069.06Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FH90_ECTSI9.860e-10869.81Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FH89_ECTSI3.810e-10770.94Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5KZF6_9PHAE3.330e-10671.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHA3_ECTSI1.340e-10466.79Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA2_ECTSI5.370e-10465.82Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FUA1_ECTSI2.070e-6249.41Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FUA2_ECTSI4.660e-6249.41Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA0_ECTSI1.550e-6150.00Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5JSF6_9PHAE5.680e-4850.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig135contigE-siliculosus-1a_F_contig135:57294..59411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size792
Model size793
Exons6
Ec32 orthologEc-13_004500.3
Ec32 ortholog descriptionPutative Leucine Rich Repeat Protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2QVSR@2759,COG4886@1
EggNOG free text desc.Leucine rich repeat
Seed eggNOG ortholog2880.D7FH89
Seed ortholog evalue6.8e-94
Seed ortholog score350.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig135.2088.1prot_E-siliculosus-1a_F_contig135.2088.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig135 57294..59411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927865.248134-CDS-E-siliculosus-1a_F_contig135:57293..574611622927865.248134-CDS-E-siliculosus-1a_F_contig135:57293..57461Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 57294..57461 +
1696318714.65788-CDS-E-siliculosus-1a_F_contig135:57293..574611696318714.65788-CDS-E-siliculosus-1a_F_contig135:57293..57461Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 57294..57461 +
1622927865.265668-CDS-E-siliculosus-1a_F_contig135:57583..577031622927865.265668-CDS-E-siliculosus-1a_F_contig135:57583..57703Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 57584..57703 +
1696318714.6682782-CDS-E-siliculosus-1a_F_contig135:57583..577031696318714.6682782-CDS-E-siliculosus-1a_F_contig135:57583..57703Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 57584..57703 +
1622927865.280972-CDS-E-siliculosus-1a_F_contig135:57824..579901622927865.280972-CDS-E-siliculosus-1a_F_contig135:57824..57990Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 57825..57990 +
1696318714.677068-CDS-E-siliculosus-1a_F_contig135:57824..579901696318714.677068-CDS-E-siliculosus-1a_F_contig135:57824..57990Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 57825..57990 +
1622927865.2957814-CDS-E-siliculosus-1a_F_contig135:58591..587011622927865.2957814-CDS-E-siliculosus-1a_F_contig135:58591..58701Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 58592..58701 +
1696318714.6882823-CDS-E-siliculosus-1a_F_contig135:58591..587011696318714.6882823-CDS-E-siliculosus-1a_F_contig135:58591..58701Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 58592..58701 +
1622927865.3123004-CDS-E-siliculosus-1a_F_contig135:58857..589501622927865.3123004-CDS-E-siliculosus-1a_F_contig135:58857..58950Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 58858..58950 +
1696318714.6956322-CDS-E-siliculosus-1a_F_contig135:58857..589501696318714.6956322-CDS-E-siliculosus-1a_F_contig135:58857..58950Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 58858..58950 +
1622927865.3321419-CDS-E-siliculosus-1a_F_contig135:59276..594111622927865.3321419-CDS-E-siliculosus-1a_F_contig135:59276..59411Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 59277..59411 +
1696318714.7032967-CDS-E-siliculosus-1a_F_contig135:59276..594111696318714.7032967-CDS-E-siliculosus-1a_F_contig135:59276..59411Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 59277..59411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig135.2088.1

>prot_E-siliculosus-1a_F_contig135.2088.1 ID=prot_E-siliculosus-1a_F_contig135.2088.1|Name=mRNA_E-siliculosus-1a_F_contig135.2088.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=264bp
LKHTEDTDVQRKELTLPPFREAYYTAVRSGLCSAYLAASVLDSNWVSTSK
TGRMGKGGAALKLLSGAVPVVGGLPGLAGKALETGDQYLQTRRLVKIVAM
APDAMECCSLARRLALQLTDGLKDDTSAAADEGDEVRVHTMAGMQDAAGK
IGSSGSSQGVDIMSDTMSEDDVFEYLLGEVASYEHRDHGGKKLGKKHLRK
LLQAIQRGCLDGSSSTEQKMEVLVLVILPEAAIRRGATSTTPEEVIVRSP
VAAFAHDSGLPSRA
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mRNA from alignment at E-siliculosus-1a_F_contig135:57294..59411+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig135.2088.1 ID=mRNA_E-siliculosus-1a_F_contig135.2088.1|Name=mRNA_E-siliculosus-1a_F_contig135.2088.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2118bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:57294..59411+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGAAGCATACCGAGGACACGGACGTACAGCGGAAGGAGCTTACCTTGCC CCCCTTTCGGGAAGCATACTACACCGCCGTCAGAAGCGGTCTATGCAGCG CGTATCTCGCTGCCAGCGTCCTCGACAGCAACTGGGTGTCCACGAGCAAG ACCGGCCGCATGGGCAAGGTGGGTGCCGCGTTAGGATGAATGTTTGTGGA GGGGGCCTACTCACGCTGGACTTAACGGTCGACATGTGGTGCTCTCTGCC AGTCAACCGAAGCCCCCGTGCTTTCGTCGCTCTCGTTCAGGGAGGAGCCG CCTTGAAGCTGCTATCTGGCGCAGTTCCGGTGGTCGGTGGCTTGCCAGGA CTAGCAGGGAAAGCGTTGGAGACTGGCGATCAATATCTCCAAACTCGACG ATTGGTAAAGGTGAGCCTGTCCTTAGGTTTACTTGCTCCCGGCGTGTCTA GGTGCGATGCCTTGGACACCTCGTGCATACCCAGCCTGTCACAACTAGTA TAAACCGCGATCCACGCTCGACATTTGGCAGATCGTGGCTATGGCTCCGG ACGCGATGGAGTGTTGCTCTCTAGCAAGAAGGTTGGCCCTACAGTTAACC GACGGTCTCAAAGACGACACCAGCGCCGCTGCCGACGAGGGAGACGAAGT TCGTGTCCACACCATGGCGGGCATGCAGGATGCGGCGGGCAAAATTGGTA TACCTAACAACGCCGTTTCGATTGCTCAGACGAATTGCTGCATGTCGAGA TGTTTTGATTGTTTCCGTCGAAACATTCAGTCTTTTAGACCCCACGTATT CCTTGGGTTGTAGTATTTCGTGCGATCGCGTCCAGCAGAACGCCCATGAG TGCCATGCCTGTCTATGCTTGTGTGTCGAGCCCAATGTTTAGCTTGAGCA TGTACAGGAAGGATTCTCCTTAGAGGGGAGGATCGGGTCCATATCGCTCG TGACGATTCGTTTTTCTGAACGTAGGAAAGGAATGCGTACCTGTAAACGG CTTGCGGGGGTTCTGAGACGTCGAATAATCGGAGTAATTTTGCCTCAGGC ATGGCGAACGCAACGTTGACATGACCCCATCTTTGGTTCACGAGTGGAGT GTACAGCTGCTGCACACGTAGCACGGGCAAATCGTGCATTTTTCGGCCAC GTCACTGATTGTTTCTACCCATCGCCAGCGCCACTACAAGCGCACCGCCC CGATTGAAGACTAGTGCCAACAGCCTGTGAACCACCAGCCTATGCTCAAG TTTCATCCTCGCGTACTTGTGACCGCGATCATGTTTTCGTCACCTCAGGC AGCTCTGGATCTAGCCAAGGGGTGGATATTATGTCTGATACCATGAGCGA GGACGACGTCTTTGAATATTTGCTCGGAGAGGTAGCCAGCTATGAACACA GGGATCATGTAAGTCCGTAAACGGAACCTATAGTGCTTGGTGCAGGTGTT GAAAATTTGACTACTGTGCCCCATAACCTAATTTCAACAAGAATGTCTTT CTCCATGAAAGGATAACGATGTCACGCTAATCATGTCTACAATGTTCCCC TCTCGTTCGTTTAGGGCGGGAAAAAACTTGGCAAGAAGCACCTTCGAAAG CTCTTGCAGGCGATTCAGCGAGGCTGCCTTGACGGCTCAAGTTCCACTGA ACAAAAGGTAGAGATTCGCGTGTGATCCAGAGACGCAAGTTGTGCCTGAT GTGTACTGTGGTTTTCCCTCACGGTCTCGGGGCCCGTCCTGTAGCTTTCT GTACCGACGGGTATGTGCCGAGTGAGGGTATGCGCAATACGCGAAAGTTG ACACAAACTTCCGGGTACACGGGAGACATGTCACCTCGGGCGGGGTACAC GCTATTGCCCACGCTATTGCCCAGAAGGTGTCGTGTGAGAAAGCAACCGA TTCAGATCAGTTTGTGAGAAAACGACGACACCCTCGTTTCTTGTTTTAGA TGTGGTGCTTATTTCGGTTCATGCTCCGAGCAGATGGAGGTCCTGGTTCT GGTGATTCTTCCCGAGGCTGCAATCAGGCGCGGCGCAACCTCGACCACGC CAGAGGAAGTGATCGTGCGATCTCCGGTTGCGGCATTCGCCCACGACAGC GGCTTGCCCTCAAGGGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig135:57294..59411+

>mRNA_E-siliculosus-1a_F_contig135.2088.1 ID=mRNA_E-siliculosus-1a_F_contig135.2088.1|Name=mRNA_E-siliculosus-1a_F_contig135.2088.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1584bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:57294..59411+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGAAGCATACCGAGGACACGGACGTACAGCGGAAGGAGCTTACCTTGCC
CCCCTTTCGGGAAGCATACTACACCGCCGTCAGAAGCGGTCTATGCAGCG
CGTATCTCGCTGCCAGCGTCCTCGACAGCAACTGGGTGTCCACGAGCAAG
ACCGGCCGCATGGGCAAGTTGAAGCATACCGAGGACACGGACGTACAGCG
GAAGGAGCTTACCTTGCCCCCCTTTCGGGAAGCATACTACACCGCCGTCA
GAAGCGGTCTATGCAGCGCGTATCTCGCTGCCAGCGTCCTCGACAGCAAC
TGGGTGTCCACGAGCAAGACCGGCCGCATGGGCAAGGGAGGAGCCGCCTT
GAAGCTGCTATCTGGCGCAGTTCCGGTGGTCGGTGGCTTGCCAGGACTAG
CAGGGAAAGCGTTGGAGACTGGCGATCAATATCTCCAAACTCGACGATTG
GTAAAGGGAGGAGCCGCCTTGAAGCTGCTATCTGGCGCAGTTCCGGTGGT
CGGTGGCTTGCCAGGACTAGCAGGGAAAGCGTTGGAGACTGGCGATCAAT
ATCTCCAAACTCGACGATTGGTAAAGATCGTGGCTATGGCTCCGGACGCG
ATGGAGTGTTGCTCTCTAGCAAGAAGGTTGGCCCTACAGTTAACCGACGG
TCTCAAAGACGACACCAGCGCCGCTGCCGACGAGGGAGACGAAGTTCGTG
TCCACACCATGGCGGGCATGCAGGATGCGGCGGGCAAAATTGATCGTGGC
TATGGCTCCGGACGCGATGGAGTGTTGCTCTCTAGCAAGAAGGTTGGCCC
TACAGTTAACCGACGGTCTCAAAGACGACACCAGCGCCGCTGCCGACGAG
GGAGACGAAGTTCGTGTCCACACCATGGCGGGCATGCAGGATGCGGCGGG
CAAAATTGGCAGCTCTGGATCTAGCCAAGGGGTGGATATTATGTCTGATA
CCATGAGCGAGGACGACGTCTTTGAATATTTGCTCGGAGAGGTAGCCAGC
TATGAACACAGGGATCATGCAGCTCTGGATCTAGCCAAGGGGTGGATATT
ATGTCTGATACCATGAGCGAGGACGACGTCTTTGAATATTTGCTCGGAGA
GGTAGCCAGCTATGAACACAGGGATCATGGCGGGAAAAAACTTGGCAAGA
AGCACCTTCGAAAGCTCTTGCAGGCGATTCAGCGAGGCTGCCTTGACGGC
TCAAGTTCCACTGAACAAAAGGGCGGGAAAAAACTTGGCAAGAAGCACCT
TCGAAAGCTCTTGCAGGCGATTCAGCGAGGCTGCCTTGACGGCTCAAGTT
CCACTGAACAAAAGATGGAGGTCCTGGTTCTGGTGATTCTTCCCGAGGCT
GCAATCAGGCGCGGCGCAACCTCGACCACGCCAGAGGAAGTGATCGTGCG
ATCTCCGGTTGCGGCATTCGCCCACGACAGCGGCTTGCCCTCAAGGGCGA
TGGAGGTCCTGGTTCTGGTGATTCTTCCCGAGGCTGCAATCAGGCGCGGC
GCAACCTCGACCACGCCAGAGGAAGTGATCGTGCGATCTCCGGTTGCGGC
ATTCGCCCACGACAGCGGCTTGCCCTCAAGGGCG
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