mRNA_E-siliculosus-1a_F_contig135.2087.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig135.2087.1
Unique NamemRNA_E-siliculosus-1a_F_contig135.2087.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: D7FH88_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH88_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.300e-22
Identity = 59/103 (57.28%), Postives = 71/103 (68.93%), Query Frame = 1
Query:   19 LPQQQETGEGDKKDEDASKPLGSPAEREEEATESAISREHVSLSPEEAEADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRR 327
            LP     GE D+K+E+A  PLGSP + EE A E  +SREH SLS E+AE  RLFR QLSS+A LDSL+ EN EAL D++RVIE+     +SPDD  SDM R R
Sbjct:  256 LPXXXXAGESDEKEENAPMPLGSPTQGEEVALERTVSREHDSLSLEQAEPGRLFRVQLSSSAWLDSLIGENPEALEDIQRVIESQVPGSVSPDDERSDMERHR 358          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.640e-20
Identity = 59/105 (56.19%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   19 LPQQQETGEGDKKDEDASKPLGSPAEREEEATESAISREHVSLSPEEAEA-DRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRRR 330
            LPQQQETGE    ++D   PLG P +REE   E A S E  SLSP +AE  DRLF AQLSS+AGLDSL++E  +AL D++RVIE+     +SPDD LSD+  RR+
Sbjct:  356 LPQQQETGEXXXNEKDNPVPLGFPNQREEAVWERARSPERASLSPGKAEEMDRLFSAQLSSSAGLDSLIREKPKALEDIQRVIESTVAGSVSPDDKLSDIDGRRK 460          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.780e-18
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   79 LGSPAEREEEATESAISREHVSLSPEEAE-ADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRRR 330
            LGSP +REE   E   S EH SLSPE+AE  DRLFR QLSS+AG DSL++EN EAL D+ RVI+APA   L   D +SDM RRR+
Sbjct:  403 LGSPNQREEVVREGVRSPEHASLSPEKAEEVDRLFRVQLSSSAGFDSLIRENPEALEDIHRVIKAPAAGSLDFVDEISDMERRRK 487          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.860e-17
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   46 GDKKDEDASKPLGSPAEREEEATESAISREHVSLSPEEAE-ADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRRR 330
            GD+ ++DA  P GS   R E   E   S EH SLSPE+AE ADR+F+AQLSS+AGLDSL++EN  AL D++RVIEA     +S D+ LSDM  RR+
Sbjct:  277 GDRMEKDAPVPPGSRNGRHEAVGERVRSPEHASLSPEKAEEADRVFKAQLSSSAGLDSLIRENPGALEDIQRVIEASVAGSVSVDNELSDMQSRRK 372          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 6.520e-16
Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 1
Query:  133 EHVSLSP-EEAEADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRRR 330
            E+ SLSP + AE DRLFR QLSS+AGLDSL+KEN EAL D++RVI+APA  G   DD LSDM RRR+
Sbjct:  461 ENASLSPGKAAEVDRLFRVQLSSSAGLDSLIKENPEALEDIQRVIKAPAAGGFYFDDELSDMERRRK 527          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.140e-15
Identity = 56/113 (49.56%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 PPPPAS---LPQQQETGEGDKKDEDASKPLGSPAEREEEATESAISREHVSLSPEEAE-ADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRR 327
            PPP A    LPQQQ+   GD+ +EDA   L SP +R+E    SA S    S SPE+AE  DRLFRAQL S+AGLDSL++EN  AL +++  IE        PD+ L DM  RR
Sbjct:  297 PPPXAPTVLLPQQQQIDAGDETEEDAPVLLDSPNQRQEVVAGSANSTGRASTSPEKAEEVDRLFRAQLVSSAGLDSLIRENPAALENIQLAIERQVAGSFYPDNELGDMQSRR 409          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: A0A6H5JDK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDK8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.320e-13
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    7 PPASLPQQQETGEGDKKDEDASKPLGSPAEREEEATESAISREHVSLSP-EEAEADRLFRAQLSSAAGLDSLVKENSEALGD 249
            PP  LPQQQE GE D+K+E+A  PLGS  + EE   + A S EH  LSP +E E DR FRAQLSS+AGL S ++EN E+L D
Sbjct:   89 PPRLLPQQQEAGESDQKEENAPMPLGSSTQGEEVMEDRAPSLEHAFLSPRKEQEVDRFFRAQLSSSAGLGSPIRENPESLED 170          
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: A0A6H5KJV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.450e-12
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   97 REEEATESAISREHVSLSPEEAE-ADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRRR 330
            REE   E   S E  SLSPE+ E  DRLF AQLSS AGL+SLV+EN EAL D++RVI++   +   PDD  SDM  RR+
Sbjct:  136 REEVVRERVRSPERASLSPEKTEEVDRLFTAQLSSHAGLNSLVRENPEALEDIQRVIQSTVVRSFYPDDKHSDMDGRRK 214          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FH88_ECTSI2.300e-2257.28Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FH90_ECTSI1.640e-2056.19Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5KZF6_9PHAE1.780e-1861.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHA2_ECTSI3.860e-1755.21Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FH89_ECTSI6.520e-1667.16Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FHA3_ECTSI4.140e-1549.56Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JDK8_9PHAE3.320e-1357.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJV0_9PHAE1.450e-1255.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig135contigE-siliculosus-1a_F_contig135:56787..57118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size330
Model size334
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2QVSR@2759,COG4886@1
EggNOG free text desc.Leucine rich repeat
Seed eggNOG ortholog2880.D7FH88
Seed ortholog evalue1.7e-19
Seed ortholog score102.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927865.199053-CDS-E-siliculosus-1a_F_contig135:56786..571161622927865.199053-CDS-E-siliculosus-1a_F_contig135:56786..57116Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 56787..57116 +
1696318714.6470983-CDS-E-siliculosus-1a_F_contig135:56786..571161696318714.6470983-CDS-E-siliculosus-1a_F_contig135:56786..57116Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig135 56787..57116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig135.2087.1prot_E-siliculosus-1a_F_contig135.2087.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig135 56787..57116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig135.2087.1

>prot_E-siliculosus-1a_F_contig135.2087.1 ID=prot_E-siliculosus-1a_F_contig135.2087.1|Name=mRNA_E-siliculosus-1a_F_contig135.2087.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=110bp
PPPPASLPQQQETGEGDKKDEDASKPLGSPAEREEEATESAISREHVSLS
PEEAEADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDD
HLSDMGRRRR
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mRNA from alignment at E-siliculosus-1a_F_contig135:56787..57118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig135.2087.1 ID=mRNA_E-siliculosus-1a_F_contig135.2087.1|Name=mRNA_E-siliculosus-1a_F_contig135.2087.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=332bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:56787..57118+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCTCCCCCTCCGGCCTCGCTACCGCAGCAGCAGGAGACAGGCGAGGGCGA CAAGAAGGACGAGGACGCTTCCAAGCCGCTTGGCTCCCCAGCTGAACGAG AGGAAGAGGCGACCGAAAGCGCCATTTCTCGGGAACATGTTTCGTTGTCA CCGGAGGAGGCCGAAGCGGACCGATTGTTCAGAGCGCAGCTTTCGTCCGC TGCGGGTTTAGATTCACTCGTCAAAGAGAACTCTGAAGCTCTGGGGGACG TCCGACGGGTGATTGAAGCACCAGCGACAAAAGGTCTTTCTCCCGACGAT CACCTCAGCGATATGGGGAGGCGCCGGAGGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig135:56787..57118+

>mRNA_E-siliculosus-1a_F_contig135.2087.1 ID=mRNA_E-siliculosus-1a_F_contig135.2087.1|Name=mRNA_E-siliculosus-1a_F_contig135.2087.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:56787..57118+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCTCCCCCTCCGGCCTCGCTACCGCAGCAGCAGGAGACAGGCGAGGGCGA
CAAGAAGGACGAGGACGCTTCCAAGCCGCTTGGCTCCCCAGCTGAACGAG
AGGAAGAGGCGACCGAAAGCGCCATTTCTCGGGAACATGTTTCGTTGTCA
CCGGAGGAGGCCGAAGCGGACCGATTGTTCAGAGCGCAGCTTTCGTCCGC
TGCGGGTTTAGATTCACTCGTCAAAGAGAACTCTGAAGCTCTGGGGGACG
TCCGACGGGTGATTGAAGCACCAGCGACAAAAGGTCTTTCTCCCGACGAT
CACCTCAGCGATATGGGGAGGCGCCGGAGGCCTCCCCCTCCGGCCTCGCT
ACCGCAGCAGCAGGAGACAGGCGAGGGCGACAAGAAGGACGAGGACGCTT
CCAAGCCGCTTGGCTCCCCAGCTGAACGAGAGGAAGAGGCGACCGAAAGC
GCCATTTCTCGGGAACATGTTTCGTTGTCACCGGAGGAGGCCGAAGCGGA
CCGATTGTTCAGAGCGCAGCTTTCGTCCGCTGCGGGTTTAGATTCACTCG
TCAAAGAGAACTCTGAAGCTCTGGGGGACGTCCGACGGGTGATTGAAGCA
CCAGCGACAAAAGGTCTTTCTCCCGACGATCACCTCAGCGATATGGGGAG
GCGCCGGAGG
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