mRNA_E-siliculosus-1a_F_contig135.2087.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: D7FH88_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH88_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 2.300e-22 Identity = 59/103 (57.28%), Postives = 71/103 (68.93%), Query Frame = 1
Query: 19 LPQQQETGEGDKKDEDASKPLGSPAEREEEATESAISREHVSLSPEEAEADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRR 327
LP GE D+K+E+A PLGSP + EE A E +SREH SLS E+AE RLFR QLSS+A LDSL+ EN EAL D++RVIE+ +SPDD SDM R R
Sbjct: 256 LPXXXXAGESDEKEENAPMPLGSPTQGEEVALERTVSREHDSLSLEQAEPGRLFRVQLSSSAWLDSLIGENPEALEDIQRVIESQVPGSVSPDDERSDMERHR 358
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.640e-20 Identity = 59/105 (56.19%), Postives = 73/105 (69.52%), Query Frame = 1
Query: 19 LPQQQETGEGDKKDEDASKPLGSPAEREEEATESAISREHVSLSPEEAEA-DRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRRR 330
LPQQQETGE ++D PLG P +REE E A S E SLSP +AE DRLF AQLSS+AGLDSL++E +AL D++RVIE+ +SPDD LSD+ RR+
Sbjct: 356 LPQQQETGEXXXNEKDNPVPLGFPNQREEAVWERARSPERASLSPGKAEEMDRLFSAQLSSSAGLDSLIREKPKALEDIQRVIESTVAGSVSPDDKLSDIDGRRK 460
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.780e-18 Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 1
Query: 79 LGSPAEREEEATESAISREHVSLSPEEAE-ADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRRR 330
LGSP +REE E S EH SLSPE+AE DRLFR QLSS+AG DSL++EN EAL D+ RVI+APA L D +SDM RRR+
Sbjct: 403 LGSPNQREEVVREGVRSPEHASLSPEKAEEVDRLFRVQLSSSAGFDSLIRENPEALEDIHRVIKAPAAGSLDFVDEISDMERRRK 487
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 3.860e-17 Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 46 GDKKDEDASKPLGSPAEREEEATESAISREHVSLSPEEAE-ADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRRR 330
GD+ ++DA P GS R E E S EH SLSPE+AE ADR+F+AQLSS+AGLDSL++EN AL D++RVIEA +S D+ LSDM RR+
Sbjct: 277 GDRMEKDAPVPPGSRNGRHEAVGERVRSPEHASLSPEKAEEADRVFKAQLSSSAGLDSLIRENPGALEDIQRVIEASVAGSVSVDNELSDMQSRRK 372
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 6.520e-16 Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 1
Query: 133 EHVSLSP-EEAEADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRRR 330
E+ SLSP + AE DRLFR QLSS+AGLDSL+KEN EAL D++RVI+APA G DD LSDM RRR+
Sbjct: 461 ENASLSPGKAAEVDRLFRVQLSSSAGLDSLIKENPEALEDIQRVIKAPAAGGFYFDDELSDMERRRK 527
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 4.140e-15 Identity = 56/113 (49.56%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 1 PPPPAS---LPQQQETGEGDKKDEDASKPLGSPAEREEEATESAISREHVSLSPEEAE-ADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRR 327
PPP A LPQQQ+ GD+ +EDA L SP +R+E SA S S SPE+AE DRLFRAQL S+AGLDSL++EN AL +++ IE PD+ L DM RR
Sbjct: 297 PPPXAPTVLLPQQQQIDAGDETEEDAPVLLDSPNQRQEVVAGSANSTGRASTSPEKAEEVDRLFRAQLVSSAGLDSLIRENPAALENIQLAIERQVAGSFYPDNELGDMQSRR 409
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: A0A6H5JDK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDK8_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 3.320e-13 Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 7 PPASLPQQQETGEGDKKDEDASKPLGSPAEREEEATESAISREHVSLSP-EEAEADRLFRAQLSSAAGLDSLVKENSEALGD 249
PP LPQQQE GE D+K+E+A PLGS + EE + A S EH LSP +E E DR FRAQLSS+AGL S ++EN E+L D
Sbjct: 89 PPRLLPQQQEAGESDQKEENAPMPLGSSTQGEEVMEDRAPSLEHAFLSPRKEQEVDRFFRAQLSSSAGLGSPIRENPESLED 170
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Match: A0A6H5KJV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV0_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 1.450e-12 Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 97 REEEATESAISREHVSLSPEEAE-ADRLFRAQLSSAAGLDSLVKENSEALGDVRRVIEAPATKGLSPDDHLSDMGRRRR 330
REE E S E SLSPE+ E DRLF AQLSS AGL+SLV+EN EAL D++RVI++ + PDD SDM RR+
Sbjct: 136 REEVVRERVRSPERASLSPEKTEEVDRLFTAQLSSHAGLNSLVRENPEALEDIQRVIQSTVVRSFYPDDKHSDMDGRRK 214 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig135.2087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig135.2087.1 >prot_E-siliculosus-1a_F_contig135.2087.1 ID=prot_E-siliculosus-1a_F_contig135.2087.1|Name=mRNA_E-siliculosus-1a_F_contig135.2087.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=110bp PPPPASLPQQQETGEGDKKDEDASKPLGSPAEREEEATESAISREHVSLSback to top mRNA from alignment at E-siliculosus-1a_F_contig135:56787..57118+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig135.2087.1 ID=mRNA_E-siliculosus-1a_F_contig135.2087.1|Name=mRNA_E-siliculosus-1a_F_contig135.2087.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=332bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:56787..57118+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig135:56787..57118+ >mRNA_E-siliculosus-1a_F_contig135.2087.1 ID=mRNA_E-siliculosus-1a_F_contig135.2087.1|Name=mRNA_E-siliculosus-1a_F_contig135.2087.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig135:56787..57118+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |