mRNA_E-siliculosus-1a_F_contig13490.2082.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13490.2082.1
Unique NamemRNA_E-siliculosus-1a_F_contig13490.2082.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13490.2082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13490contigE-siliculosus-1a_F_contig13490:845..1200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size354
Model size358
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927864.4390311-CDS-E-siliculosus-1a_F_contig13490:844..11981622927864.4390311-CDS-E-siliculosus-1a_F_contig13490:844..1198Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13490 845..1198 +
1696318714.3355913-CDS-E-siliculosus-1a_F_contig13490:844..11981696318714.3355913-CDS-E-siliculosus-1a_F_contig13490:844..1198Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13490 845..1198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13490.2082.1prot_E-siliculosus-1a_F_contig13490.2082.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13490 845..1198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13490.2082.1

>prot_E-siliculosus-1a_F_contig13490.2082.1 ID=prot_E-siliculosus-1a_F_contig13490.2082.1|Name=mRNA_E-siliculosus-1a_F_contig13490.2082.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=118bp
RDSSSKCDIVLIVSPYGRPTRAIGTAGRLNLRNSGRGHRQRRCLHGGVTE
DGEAVRAGTRAATPSSRRRRFTTGRIGRVSASRERRRRRRRWRWRRGKQR
QRRVCHADSSSSRSSSWG
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mRNA from alignment at E-siliculosus-1a_F_contig13490:845..1200+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13490.2082.1 ID=mRNA_E-siliculosus-1a_F_contig13490.2082.1|Name=mRNA_E-siliculosus-1a_F_contig13490.2082.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=356bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13490:845..1200+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGACAGCAGCAGCAAGTGCGACATAGTCTTGATTGTCTCACCGTACGG
AAGACCGACGAGAGCGATCGGTACAGCAGGCAGGCTTAACCTACGAAACA
GCGGCAGAGGGCACAGACAGAGGCGTTGTTTGCACGGAGGAGTGACGGAG
GATGGCGAGGCTGTGCGAGCCGGGACCCGAGCGGCCACGCCGAGTTCACG
GCGGCGACGATTTACCACCGGCCGCATCGGCAGGGTATCTGCTTCCCGTG
AACGACGACGACGGCGGCGGCGGTGGCGGTGGCGGCGCGGCAAGCAGCGG
CAGCGGCGCGTGTGCCATGCCGACAGCAGCAGCAGCAGAAGCAGCTCCTG
GGGCCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13490:845..1200+

>mRNA_E-siliculosus-1a_F_contig13490.2082.1 ID=mRNA_E-siliculosus-1a_F_contig13490.2082.1|Name=mRNA_E-siliculosus-1a_F_contig13490.2082.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13490:845..1200+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGACAGCAGCAGCAAGTGCGACATAGTCTTGATTGTCTCACCGTACGG
AAGACCGACGAGAGCGATCGGTACAGCAGGCAGGCTTAACCTACGAAACA
GCGGCAGAGGGCACAGACAGAGGCGTTGTTTGCACGGAGGAGTGACGGAG
GATGGCGAGGCTGTGCGAGCCGGGACCCGAGCGGCCACGCCGAGTTCACG
GCGGCGACGATTTACCACCGGCCGCATCGGCAGGGTATCTGCTTCCCGTG
AACGACGACGACGGCGGCGGCGGTGGCGGTGGCGGCGCGGCAAGCAGCGG
CAGCGGCGCGTGTGCCATGCCGACAGCAGCAGCAGCAGAAGCAGCTCCTG
GGGCAGGGACAGCAGCAGCAAGTGCGACATAGTCTTGATTGTCTCACCGT
ACGGAAGACCGACGAGAGCGATCGGTACAGCAGGCAGGCTTAACCTACGA
AACAGCGGCAGAGGGCACAGACAGAGGCGTTGTTTGCACGGAGGAGTGAC
GGAGGATGGCGAGGCTGTGCGAGCCGGGACCCGAGCGGCCACGCCGAGTT
CACGGCGGCGACGATTTACCACCGGCCGCATCGGCAGGGTATCTGCTTCC
CGTGAACGACGACGACGGCGGCGGCGGTGGCGGTGGCGGCGCGGCAAGCA
GCGGCAGCGGCGCGTGTGCCATGCCGACAGCAGCAGCAGCAGAAGCAGCT
CCTGGGGC
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