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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1347.2070.1 vs. uniprot
Match: A0A6H5JZ51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ51_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 6.170e-15 Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2
Query: 284 MSRLKMFECLGDCADFDLVNGCVDSNQAQQANRRPA 391
MSRLKMFECLGDCADFDLVNGCVDSNQAQQANRRPA
Sbjct: 1 MSRLKMFECLGDCADFDLVNGCVDSNQAQQANRRPA 36
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 840 |
| Model size | 1124 |
| Exons | 4 |
| Ec32 ortholog | Ec-15_001190.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927862.0288873-UTR-E-siliculosus-1a_F_contig1347:6167..6450 | 1622927862.0288873-UTR-E-siliculosus-1a_F_contig1347:6167..6450 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1347 6168..6450 - |
| 1696318713.286275-UTR-E-siliculosus-1a_F_contig1347:6167..6450 | 1696318713.286275-UTR-E-siliculosus-1a_F_contig1347:6167..6450 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1347 6168..6450 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1347.2070.1 >prot_E-siliculosus-1a_F_contig1347.2070.1 ID=prot_E-siliculosus-1a_F_contig1347.2070.1|Name=mRNA_E-siliculosus-1a_F_contig1347.2070.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=280bp
MSRLKMFECLGDCADFDLVNGCVDSNQAQQANRRPASQQQQERGQQQGLE
GRQQQQQPEASDSDSHSSRSYSDDEDGSFYSQDEDNVDGDDGAGQGGGGY
DDSAGAYNISASSPATSMPPLQSPPAYDGSVAAADADLQALSVSAALRAR
EHQQEKNGGGSVGGLSGSGYLSDGSNWKSGGTVDTCDTVSATTATTTNGG
GGGGGGSGGSSSAGGVGAGTEYPSSSSSTASAAAQEAAAAGRRASSSAKD
AVAAAAAAADARTQEEAEAAADRAAKAAAN back to topmRNA from alignment at E-siliculosus-1a_F_contig1347:935..6450- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1347.2070.1 ID=mRNA_E-siliculosus-1a_F_contig1347.2070.1|Name=mRNA_E-siliculosus-1a_F_contig1347.2070.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5516bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1347:935..6450- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGATAGCCCAGCTTCTGGCTTGTTTTGGCTGCGACCCCCAGGGAACATC
TGGCAGCAGCAGCCACAGCAGCGCACCACCAACTCCGTCGTAGGGCCCAC
ACACCCCACCGTGCGCTCTCGGGCACCCTTAACTCGGCCCTCGAGATCGA
TCCATCGCGCTGAGGTGGTAAGAATAAAACTTTCCTAGGGACGGTTGAAC
GTACAACTGGGGCACGCGAGGCAGACCAGGCTCAACCTCGCTTTTTATTT
CAGGAGCAGCAGCAGCAGAGGAAGGTAGCGGACATGTCGCGGCTCAAGAT
GTTCGAGTGCCTGGGCGATTGCGCGGACTTCGATCTGGTGAATGGGTGCG
TAGACAGCAACCAGGCGCAGCAGGCGAACCGCCGTCCTGCTTCGCAGCAG
CAGCAGGAGCGCGGGCAGCAGCAAGGGTTGGAGGGGCGGCAGCAACAACA
GCAGCCGGAGGCATCCGACAGCGACTCGCACTCTTCGCGCTCATATTCTG
ATGTGAGAGACCGCTCTGGTACAGCAGTAGGCACCCGTCCACGGGGGTTT
AGAAGCCGAAACCTCTCTAGAGATGTAGCGAGCAGCGTGCCCGCACATGG
GGGGGGGGGGGTGCATCCTCGGCGTGTTGTTGTGTTGTTGTAGCCTTTGT
GTCTCGAAAATCATGAGAGAGGATGACAGGCCGTGTATCGTCGGGAATAC
CAGTTGTCGAAGTTTTTCCGAGAGTCAGTCAAAGATGGGCGCCACTTTGG
CGCCACGCGTATTTATGCAAAACAGCAGAGAGAGAGAGACATTCATCATC
GAAGGCGGTCAAGCGTTGGCGCCCCGTGTACGTCCACCGCGGCGGCTGCT
GCTGCTGCTGCTAGCGCTGGTTTTGTTCTGCGCGCATTTTTTGTCGCCGA
GATAGAGGGGTCACTGTGTACACCCGCCGACCCTGCGGAAACAAAATTGC
TTGCTCCCCTCTCTTGTTGGACATTGAACAGTAGTTGGTGATCGATGACC
CCTGCAGAGATGATGATAGAAATCCCGCTCTTTGCGTGCGATCAATCCTG
CCTCACCCCCTTGCTTTCGGCGCACACACACATGCCCGACATGCTCCGGA
GCGTTTTGTTTTTGTTCCGGTACCGCGATGGTATAATGTAGACCACCTGG
TAGCCAGGGTTCTGCTGTTGCACACCCGTCGGAATGTAATGTCTCTTCTC
TCTTGTCTTGCATCGAGAACCATGGAATTCAACTGCTCTCTCTCCGTCTC
TGCTGGTGCTGCTGTCAAGCGCACACGCGCGAAGAATTGTTAAAATCTTA
ATCTTTCAGTCGTGTCTTTCGAACCGTTCCCAAGACTACACATCTCCATT
TCTGCGCTATTGGACGGTCACACAGCCGCGCAGGATCGATGCCACAGGCT
GGGGCGTTTTTTGGGCCCTTGATCTGAAAGCACCGGTCGCTACGGGACCC
AATTCCTGAGATACCTACATAAACGTGTTTTGGGCAATCAGTTCCGCCTC
TCACACCACACATGCAGGGAGGGTCCCGCGCATATGCGCGTCGTAACTTA
TTCTCCTCATGTATAAAAAAAAAAAATGGACAACAAATAATGCTGATCCG
GTGTGTGTTTTGTTGACTACAACATGCTCCTTGTTGCATTTCCATCGAAC
GTGAAGACAACAAAAATATCGAAAATGTTTCCACCGTTTTGCCTGTGAGC
ACCCTTATTCCACCGTTTTGCTACGGCGTTCAGCGTTGGCCCCAAGGGTT
ATTGCGCTACACGAACTCTATCTAGTTAATGGTGGCAATGATGAAAAACG
ACTGTCTATGCTACTAGCGCTGGTACCCTGTTTTCATTTGTTGTACATAG
TGTCGTCGGCGACTTTGCTGAGAGAGCAAGTAGCCGGGTGACCCTCGATA
GTTGGCGAGGAATTCAACGTACAAAACGTCTGTCTGTCCTGCGGGCGATA
GTGATGTAGTGGACGCACCGCTGCCGCTGATGGCGTCTGTGGCCGGGTTT
GTGTGTCTCGTAAGAGATGGGGTGCGCGTGTTGGCGTCGGCTTTGCTCCG
TAGGTGATGCATGTCTTTGCCCCCCGACAACAATTATTTTGAGGTCCTCC
AACAACACGCAGCTCATTAATTCTTCATGATAAGGCGCGAAAGTGTTTGT
GTGTTGAATCTGTTCGTTTTCTCTGCCACCAAGAACAACACGCCTGCCCT
CGCAAGGCAGGAAAAAGCGCTAATAATAAAAGCATTAGATTGCTATGTAT
CTTCGCACGATGATCATTCTTGAGTCGTTTCGATCTTGGGTGGAGTGTGC
GCATATTCAGCTACACATGCATTGCTACACTGCTTCTGTGCCAACATCCA
TTGGCGGTCACGTGCTGGTATTGATGCGTACCGACTTGCTCCGCATTCAC
AATGCACTCCTTTCCCTTTTTTTGTTTTGTATTGCCTCTGCTGCCTAGCT
GTTAGCTAGTTGTCGTTGTGCTGCTGGTTGAATCGATCAACAATGGGTCG
GCGTGGCGAATGTTTACAGAACACACAGAAGTGGAAGTCGCCTAGGATAT
ACACACTAAATACCGTTTACGGAGTACATGCCACCCACTCCCAAAATGCA
CGTCGTTTACATTTTTCCTCTCTGAATATTTGTTGTTGACGTGCACGGGG
TATATCAATAACAATGCCCCGTTTCACGCGACGGGTTCGCCCCCTGGGGG
GCAAGCACGCAAGAAGCAGCACGTGAAAACAAACCTGCACCTGCATCACT
GCAGAAGCTGCTGTGTCAATATGTGTAGCTTTTCTTCCTTTTCTTGTGTC
CCCTGCAGCTGGTCCCCTGTCTCCCTCTCCCCCTGGGTGTTGTCCACTTT
TTCTTTTGTCTTTTGTTGGGTCTCAAGTTATTTTCGCTGTCGGTTGCGTG
CATAATCTTCCGCAAAGCAAGGAAATCGTATGCATATCATTATCGTATTA
TGCATAGAGTAGGATCGTTGCAATGGTTGATTCGGTGAGGTACCTTGATG
AACATTTGTCAAACGTTTCACAATTGTCATGGGCGTTCTTTTGACATCTC
TAACGTCTTGGCGAAGCAAGGGCAACTAATTTTACGACGACTAGCTCATT
AATCCGCCGAGAGACCGGGCCATAGCGGTGCTACGTCCATATCTACATAG
TACGCGCGCACACCCACCACAACCACGGTGGTGCGGATATGCCAGAGATG
AATTCGTCGCGACGTATCGATATATACCTATTGCTGCCTTCTCTTTTTTT
TTTTTTCCCTTCGTTTCCTTCTCCCGTTGGTAATTTTTTTGCTTTTTGAG
ACATGAAGCAATGCAGCCTGCTGCTGGTACCTATTCTTGACTTCCCTCTC
TTTGTAATGTGTCTTACCCTCGGTGTTCTCCTCCCGTTTTCGTCAGGACG
AGGACGGGTCTTTCTACTCCCAGGATGAGGACAACGTCGACGGGGACGAC
GGTGCCGGGCAGGGCGGGGGAGGGTACGACGACAGCGCCGGGGTGAGTGC
TGCGCCGGGTGACGCATATCGTGGCTTGCAGCCATCGTAGCTCATGTTCG
GTTTCAACGAGGGGTATAGAGAGAGGGACAGACACTACGGCGGCAGGGTA
AATAGATTGCGGGGCGAGGGCGAAGGGGGGGCAAGGTGACTTAACAAATC
CGGTTTCTACGCGGAGAAGGCTCTTTGTTTTTTGGGCCGGGACACGACGG
ACTTCCCCATGCATACATATATGTAACTCTTGTCGCGTTGGGGGATTTTC
TCCCTTTCTTTGTTTTCGTCTTTCGATGTTTTTCGCCTTCCGCTTCTGGT
AGCGTAGTGCCTGGCTGGTCTGTCTGTTTTGCCGCCCGCTACTGTTTAGT
GCAGACTTGCCTTGCCCGTCTCCTTCTCGTCTATGGTATGTATCTAAGGA
TATATATATGTTCGATCCAATCCTGCGCAGAGGTTGGTACATGTAACGCG
GAGGCGTGTAGCCGTTATTGTTATGATGAATGGAGGCGGGGTTTCGTGCC
GCTATTAAGCCCTAACCCAACCCCGCGACCCCTACAATAACCAAGGTTGA
TGTCCTCGCGAAGACTGCTGAACGCGGAGGTGTCGGTCGTGGCGTTGGTG
CGGTTGTGCTTGTCTTGTCTGGAGTAGTGAGCGCGTAAGGAACGTGATTG
ATTGTGCGATAAAGGTGGTGTGTGTGCAGGAGGAACCAAGCGCTCGCTTG
ACGCACACCAGAGCCGTGCCAAGTGCAGTTCTCGCCGTCTTCCCGCAGCA
GAATAATTCTTGACCTTTTCTTTCTTTTTTTTTTCGTTTTTCTTTCCTCC
TCCGGCACGCGCACTCCGTTTTTTTTTTCTTGTGCAAAAAGTTGTCTATT
TATCATTGGAACAAGCTACTTTTCACAGCTACTTTTCGCAGCTTGCCCGG
AAACCTCTGCATGCCGTTCCGAGAGAGACCCCCCCCATCCCCCCGTTGTT
CTCAATGGTCAACAGCTAAGGCATGCAAAACATGAGTACCCCCCCCCACG
CACGCTGAACGGATCCGTCCACCCCCTCAGGCGTACAACATCTCGGCATC
CTCGCCCGCGACAAGCATGCCCCCGCTGCAGTCGCCCCCGGCCTACGACG
GCAGCGTCGCCGCCGCCGACGCCGACCTCCAAGCCCTCAGCGTCTCGGCC
GCCCTGCGCGCCCGCGAGCACCAACAGGAGAAGAACGGCGGCGGGAGCGT
TGGCGGCCTGAGCGGCAGCGGCTACCTCTCCGACGGCAGCAACTGGAAGT
CCGGGGGCACCGTGGATACCTGCGACACCGTCTCCGCCACCACAGCCACG
ACCACAAACGGTGGCGGCGGCGGCGGCGGCGGCAGCGGTGGCAGCAGCAG
CGCGGGCGGCGTCGGGGCGGGCACCGAGTACCCGTCCTCGTCGTCGTCTA
CGGCTTCGGCCGCGGCGCAGGAGGCCGCCGCTGCCGGCCGGAGGGCGTCT
TCGAGCGCCAAGGACGCGGTGGCGGCGGCGGCTGCCGCCGCAGACGCTAG
GACTCAGGAGGTGTGTTTTTTTTTCATTGTTTGTGTTGGTCGGCGGCGCT
AACCGTGGTGTGTGCGTGTTTGTTTTGTTTATTAGGGTTTGACCGCGCTC
TGACGGGGCGACCAGCAAGAAAGACGTCAGTGCCAGGACGCAGAAGGCTG
TGTGTGTTTTTTGTCTCTTTTTATTTGGCGTCGACGGCTCTAGCCGGCGT
GTGTATTTTTGTTGTGTGCGTTCTTTTTCTTTTTTTGTTCTCGCGTCGAC
GGCGCAAACGGTGTCGTGTGTGTGTTTGTGTGTCTCGTTGATGAACATTC
GCCAGCCCTATGTATCTGTGCTGTCAGGCGTACGCGGAGGGTATGTACTA
CCCCGCCTGTTCCGTGTCCACCGCGTCTGTTTCTCTCCGACCCCTTGTCT
CGCTACCTTCGAACTAACGCTCTTCTTGTTGTTGTTCTTCTTCTTATCGT
TGTGTCGGGGGTTGGCACCAGGAGGCCGAAGCGGCAGCCGACAGGGCCGC
CAAGGCCGCCGCTAAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1347:935..6450- >mRNA_E-siliculosus-1a_F_contig1347.2070.1 ID=mRNA_E-siliculosus-1a_F_contig1347.2070.1|Name=mRNA_E-siliculosus-1a_F_contig1347.2070.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1680bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1347:935..6450- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGCGGCTCAAGATGTTCGAGTGCCTGGGCGATTGCGCGGACTTCGA
TCTGGTGAATGGGTGCGTAGACAGCAACCAGGCGCAGCAGGCGAACCGCC
GTCCTGCTTCGCAGCAGCAGCAGGAGCGCGGGCAGCAGCAAGGGTTGGAG
GGGCGGCAGCAACAACAGCAGCCGGAGGCATCCGACAGCGACTCGCACTC
TTCGCGCTCATATTCTGATATGTCGCGGCTCAAGATGTTCGAGTGCCTGG
GCGATTGCGCGGACTTCGATCTGGTGAATGGGTGCGTAGACAGCAACCAG
GCGCAGCAGGCGAACCGCCGTCCTGCTTCGCAGCAGCAGCAGGAGCGCGG
GCAGCAGCAAGGGTTGGAGGGGCGGCAGCAACAACAGCAGCCGGAGGCAT
CCGACAGCGACTCGCACTCTTCGCGCTCATATTCTGATGACGAGGACGGG
TCTTTCTACTCCCAGGATGAGGACAACGTCGACGGGGACGACGGTGCCGG
GCAGGGCGGGGGAGGGTACGACGACAGCGCCGGGGACGAGGACGGGTCTT
TCTACTCCCAGGATGAGGACAACGTCGACGGGGACGACGGTGCCGGGCAG
GGCGGGGGAGGGTACGACGACAGCGCCGGGGCGTACAACATCTCGGCATC
CTCGCCCGCGACAAGCATGCCCCCGCTGCAGTCGCCCCCGGCCTACGACG
GCAGCGTCGCCGCCGCCGACGCCGACCTCCAAGCCCTCAGCGTCTCGGCC
GCCCTGCGCGCCCGCGAGCACCAACAGGAGAAGAACGGCGGCGGGAGCGT
TGGCGGCCTGAGCGGCAGCGGCTACCTCTCCGACGGCAGCAACTGGAAGT
CCGGGGGCACCGTGGATACCTGCGACACCGTCTCCGCCACCACAGCCACG
ACCACAAACGGTGGCGGCGGCGGCGGCGGCGGCAGCGGTGGCAGCAGCAG
CGCGGGCGGCGTCGGGGCGGGCACCGAGTACCCGTCCTCGTCGTCGTCTA
CGGCTTCGGCCGCGGCGCAGGAGGCCGCCGCTGCCGGCCGGAGGGCGTCT
TCGAGCGCCAAGGACGCGGTGGCGGCGGCGGCTGCCGCCGCAGACGCTAG
GACTCAGGAGGCGTACAACATCTCGGCATCCTCGCCCGCGACAAGCATGC
CCCCGCTGCAGTCGCCCCCGGCCTACGACGGCAGCGTCGCCGCCGCCGAC
GCCGACCTCCAAGCCCTCAGCGTCTCGGCCGCCCTGCGCGCCCGCGAGCA
CCAACAGGAGAAGAACGGCGGCGGGAGCGTTGGCGGCCTGAGCGGCAGCG
GCTACCTCTCCGACGGCAGCAACTGGAAGTCCGGGGGCACCGTGGATACC
TGCGACACCGTCTCCGCCACCACAGCCACGACCACAAACGGTGGCGGCGG
CGGCGGCGGCGGCAGCGGTGGCAGCAGCAGCGCGGGCGGCGTCGGGGCGG
GCACCGAGTACCCGTCCTCGTCGTCGTCTACGGCTTCGGCCGCGGCGCAG
GAGGCCGCCGCTGCCGGCCGGAGGGCGTCTTCGAGCGCCAAGGACGCGGT
GGCGGCGGCGGCTGCCGCCGCAGACGCTAGGACTCAGGAGGAGGCCGAAG
CGGCAGCCGACAGGGCCGCCAAGGCCGCCGCTAACGAGGCCGAAGCGGCA
GCCGACAGGGCCGCCAAGGCCGCCGCTAAC back to top
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