mRNA_E-siliculosus-1a_F_contig13458.2064.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13458.2064.1
Unique NamemRNA_E-siliculosus-1a_F_contig13458.2064.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13458.2064.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 3.640e-84
Identity = 137/149 (91.95%), Postives = 141/149 (94.63%), Query Frame = -1
Query:    1 VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAAPTDVPHMAPHVLDSLEQVKQHLAAVASTGTSPRLVLLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 447
            VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAA TD PH  PHVLD LEQVKQHLAAVASTGT PRLV+LDDVWEREVVDAFVPLGFKVLLTTRDRSVV VPAGRL++GDMTEEEALELLRK+SG VGQPGDDVR
Sbjct:  255 VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRLEVGDMTEEEALELLRKSSGAVGQPGDDVR 403          
BLAST of mRNA_E-siliculosus-1a_F_contig13458.2064.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 4.120e-82
Identity = 137/149 (91.95%), Postives = 143/149 (95.97%), Query Frame = -1
Query:    1 VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAAPTDVPHMAPHVLDSLEQVKQHLAAVASTGTSPRLVLLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 447
            VLASA VRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLA ++GAAPTD PH  PHVLD LEQV+QHLAAVASTGTSPRLV+LDDVWEREVVDAFVPLGFKVLLTTRDRSVVG+PAGRL+LGDMTEEEALELLRKTSGTVGQPGDDVR
Sbjct:  309 VLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRLELGDMTEEEALELLRKTSGTVGQPGDDVR 457          
BLAST of mRNA_E-siliculosus-1a_F_contig13458.2064.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 2.290e-79
Identity = 135/149 (90.60%), Postives = 141/149 (94.63%), Query Frame = -1
Query:    1 VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAAPTDVPHMAPHVLDSLEQVKQHLAAVASTGTSPRLVLLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 447
            VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAR++GAAPTD P   P VLDSLEQV+QHLAAV STGTS RLV+LDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRL+LGD+TEEEALELLRKTSG VGQPGDDVR
Sbjct:  292 VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLELGDVTEEEALELLRKTSGAVGQPGDDVR 440          
BLAST of mRNA_E-siliculosus-1a_F_contig13458.2064.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 1.370e-75
Identity = 134/150 (89.33%), Postives = 137/150 (91.33%), Query Frame = -1
Query:    1 VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAAPTDVPHMAPHVLDSLEQVKQHLAAV-ASTGTSPRLVLLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 447
            VLASAVVRKPSVREHFRGGI WVRVGRGAK+SLL LLQGLAREMG APTD PH  P VLDSLEQV+QHLAAV ASTGTSPRLV+LDDVWEREVVDA VPLGFKVLLTTRD SVV VPA RLDLGDMTEEEALELLRKTSGTVGQPGD VR
Sbjct:  266 VLASAVVRKPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPARRLDLGDMTEEEALELLRKTSGTVGQPGDYVR 415          
BLAST of mRNA_E-siliculosus-1a_F_contig13458.2064.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 5.410e-74
Identity = 129/149 (86.58%), Postives = 136/149 (91.28%), Query Frame = -1
Query:    1 VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAAPTDVPHMAPHVLDSLEQVKQHLAAVASTGTSPRLVLLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 447
            VLASAVVR PSVREHFRGGI WVRVGRGAK+SLL LLQGLARE+GAAPTD PH  PH LDSLEQV+QHLAAVAST  SPRLV+LDDVWEREVVDAFVPLGFK+LLTTRDRS+V  PAGRL+LGDMTEEEALELLRKTSGTV  PGDDVR
Sbjct:   94 VLASAVVRMPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRLELGDMTEEEALELLRKTSGTV-DPGDDVR 241          
BLAST of mRNA_E-siliculosus-1a_F_contig13458.2064.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 1.620e-72
Identity = 119/149 (79.87%), Postives = 131/149 (87.92%), Query Frame = -1
Query:    1 VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAAPTDVPHMAPHVLDSLEQVKQHLAAVASTGTSPRLVLLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 447
            +L SAVVRK +VREHFRGG+FW+RVGR AK+SLL+LLQGLAREM AAPTD PH  PHVL+SLEQVKQHLA VAS GTSPRLV+LDDVWEREVVDA + LG KVL+TTRDRSVVGV  G L+LGDMTEEEALELL KTS TVGQPG +VR
Sbjct:   50 MLVSAVVRKSNVREHFRGGVFWMRVGRHAKNSLLSLLQGLAREMSAAPTDTPHGVPHVLESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVGVSGGLLELGDMTEEEALELLLKTSRTVGQPGHEVR 198          
BLAST of mRNA_E-siliculosus-1a_F_contig13458.2064.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 4.290e-72
Identity = 123/149 (82.55%), Postives = 132/149 (88.59%), Query Frame = -1
Query:    1 VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAAPTDVPHMAPHVLDSLEQVKQHLAAVASTGTSPRLVLLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 447
            VLASAVVRK SVREHFRGGIFW+ VGRGAK  LL LLQGL  +MGAAPTD PH  PHVLDSLEQV++HL AVASTGTSPRLV+LDDVWEREVVDA +PLGFKVL+TTRDRSVVGVP   L+LGDMTEEEALELL KTSGTVG+PGD VR
Sbjct:  186 VLASAVVRKSSVREHFRGGIFWLTVGRGAKKRLLPLLQGLTGDMGAAPTDTPHGVPHVLDSLEQVQRHLGAVASTGTSPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTRCLELGDMTEEEALELLLKTSGTVGRPGDSVR 334          
BLAST of mRNA_E-siliculosus-1a_F_contig13458.2064.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 3.040e-67
Identity = 116/149 (77.85%), Postives = 127/149 (85.23%), Query Frame = -1
Query:    1 VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAAPTDVPHMAPHVLDSLEQVKQHLAAVASTGTSPRLVLLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 447
            VLASA+VRK SV EHFRGGIFW+ +GRGA  SLL  LQGLAREMGAAPTD PH  PHV DSLEQV QHLAAV S G+SPRLV+LDDVWEREVV AF+ +G KVL+TTRDRS+VGVP G L+LGDM E+EALELL KTSGTVGQPGD VR
Sbjct:  286 VLASALVRKSSVLEHFRGGIFWMEMGRGANKSLLHRLQGLAREMGAAPTDAPHGVPHVFDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVPGGLLELGDMAEDEALELLWKTSGTVGQPGDGVR 434          
BLAST of mRNA_E-siliculosus-1a_F_contig13458.2064.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 4.480e-55
Identity = 101/141 (71.63%), Postives = 113/141 (80.14%), Query Frame = -1
Query:   25 VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAAPTDVPHMAPHVLDSLEQVKQHLAAVASTGTSPRLVLLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTV 447
            VL SAVVR+ SV E+FRGGIF + VGRGAK+ LL LLQGLAREMGAAP   PH  P  LDSLE V QHL  V STGTSPRLV+LDDV EREVV+A +PLG K+++TTRDRSVVGVP G L++GDMTEEEALELL   SG V
Sbjct:    8 VLVSAVVRELSVLEYFRGGIFLMSVGRGAKNRLLPLLQGLAREMGAAPAHAPHGNPGDLDSLEHVMQHLTTVVSTGTSPRLVVLDDVLEREVVEALLPLGLKLVVTTRDRSVVGVPGGCLEVGDMTEEEALELLMLASGAV 148          
BLAST of mRNA_E-siliculosus-1a_F_contig13458.2064.1 vs. uniprot
Match: A0A6H5KQU6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU6_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.250e-51
Identity = 99/138 (71.74%), Postives = 110/138 (79.71%), Query Frame = -1
Query:   34 VLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAAPTDVPHMAPHVLDSLEQVKQHLAAVASTGTSPRLVLLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTS 447
            VL SAVVR   VREHF GGIFW+RVGRGAK+SLL L+Q LAREMGA      H  P+VLD LEQV QH+AAVASTGTSPRLV+LDDVWEREVVDA + L  KVL+TTRD SVVGVP  RL+  DM E+EA+ELL KTS
Sbjct:  142 VLVSAVVRHLRVREHFHGGIFWMRVGRGAKTSLLPLMQTLAREMGA------HGVPYVLDGLEQVGQHVAAVASTGTSPRLVVLDDVWEREVVDALLRLKLKVLVTTRDHSVVGVPGTRLEPEDMAEDEAMELLLKTS 273          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13458.2064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXS7_9PHAE3.640e-8491.95NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI4.120e-8291.95NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI2.290e-7990.60NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LGG5_ECTSI1.370e-7589.33NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FUD7_ECTSI5.410e-7486.58NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5LJA6_9PHAE1.620e-7279.87NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KU94_9PHAE4.290e-7282.55NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LPV9_ECTSI3.040e-6777.85NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5JLW6_9PHAE4.480e-5571.63NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KQU6_9PHAE1.250e-5171.74NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13458contigE-siliculosus-1a_F_contig13458:566..1014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size447
Model size450
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927861.2343352-CDS-E-siliculosus-1a_F_contig13458:565..10121622927861.2343352-CDS-E-siliculosus-1a_F_contig13458:565..1012Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13458 566..1012 +
1696318712.9728603-CDS-E-siliculosus-1a_F_contig13458:565..10121696318712.9728603-CDS-E-siliculosus-1a_F_contig13458:565..1012Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13458 566..1012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13458.2064.1prot_E-siliculosus-1a_F_contig13458.2064.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13458 566..1012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13458.2064.1

>prot_E-siliculosus-1a_F_contig13458.2064.1 ID=prot_E-siliculosus-1a_F_contig13458.2064.1|Name=mRNA_E-siliculosus-1a_F_contig13458.2064.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=149bp
PDIVSRLTHSPARLPEQLQRLFLRHVSQIQASGRHTNDRPVTRGQQHLKS
QRNKRVHDLAFPHIVQQHQAWGSAGGCDCSQVLLHLLEAVKDVRRHVRNI
RRRRAHLPGEALKESQEAALRAPPNSHPENTAAEVLPHARLANDSRGQH
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mRNA from alignment at E-siliculosus-1a_F_contig13458:566..1014+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13458.2064.1 ID=mRNA_E-siliculosus-1a_F_contig13458.2064.1|Name=mRNA_E-siliculosus-1a_F_contig13458.2064.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=449bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13458:566..1014+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGGACATCGTCTCCAGGCTGACCCACAGTCCCGCTCGTCTTCCGGAGCA GCTCCAGCGCCTCTTCCTCCGTCATGTCTCCCAGATCCAAGCGTCCGGCC GGCACACCAACGACCGACCGGTCACGCGTGGTCAGCAGCACCTTAAATCC CAGAGGAACAAACGCGTCCACGACCTCGCGTTCCCACACATCGTCCAGCA ACACCAGGCGTGGGGAAGTGCCGGTGGATGCGACTGCAGCCAGGTGCTGC TTCACCTGCTCGAGGCTGTCAAGGACGTGAGGCGCCATGTGCGGAACATC CGTCGGCGCCGCGCCCATCTCCCTGGCGAGGCCCTGAAGGAGAGCCAGGA GGCTGCTCTTCGCGCCCCTCCCAACTCTCACCCAGAAAATACCGCCGCGG AAGTGCTCCCTCACGCTCGGCTTGCGAACGACAGCAGAGGCCAGCACGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13458:566..1014+

>mRNA_E-siliculosus-1a_F_contig13458.2064.1 ID=mRNA_E-siliculosus-1a_F_contig13458.2064.1|Name=mRNA_E-siliculosus-1a_F_contig13458.2064.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13458:566..1014+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGGACATCGTCTCCAGGCTGACCCACAGTCCCGCTCGTCTTCCGGAGCA
GCTCCAGCGCCTCTTCCTCCGTCATGTCTCCCAGATCCAAGCGTCCGGCC
GGCACACCAACGACCGACCGGTCACGCGTGGTCAGCAGCACCTTAAATCC
CAGAGGAACAAACGCGTCCACGACCTCGCGTTCCCACACATCGTCCAGCA
ACACCAGGCGTGGGGAAGTGCCGGTGGATGCGACTGCAGCCAGGTGCTGC
TTCACCTGCTCGAGGCTGTCAAGGACGTGAGGCGCCATGTGCGGAACATC
CGTCGGCGCCGCGCCCATCTCCCTGGCGAGGCCCTGAAGGAGAGCCAGGA
GGCTGCTCTTCGCGCCCCTCCCAACTCTCACCCAGAAAATACCGCCGCGG
AAGTGCTCCCTCACGCTCGGCTTGCGAACGACAGCAGAGGCCAGCACCCG
GACATCGTCTCCAGGCTGACCCACAGTCCCGCTCGTCTTCCGGAGCAGCT
CCAGCGCCTCTTCCTCCGTCATGTCTCCCAGATCCAAGCGTCCGGCCGGC
ACACCAACGACCGACCGGTCACGCGTGGTCAGCAGCACCTTAAATCCCAG
AGGAACAAACGCGTCCACGACCTCGCGTTCCCACACATCGTCCAGCAACA
CCAGGCGTGGGGAAGTGCCGGTGGATGCGACTGCAGCCAGGTGCTGCTTC
ACCTGCTCGAGGCTGTCAAGGACGTGAGGCGCCATGTGCGGAACATCCGT
CGGCGCCGCGCCCATCTCCCTGGCGAGGCCCTGAAGGAGAGCCAGGAGGC
TGCTCTTCGCGCCCCTCCCAACTCTCACCCAGAAAATACCGCCGCGGAAG
TGCTCCCTCACGCTCGGCTTGCGAACGACAGCAGAGGCCAGCAC
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