mRNA_E-siliculosus-1a_F_contig1344.2060.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1344.2060.1
Unique NamemRNA_E-siliculosus-1a_F_contig1344.2060.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1344.2060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1344contigE-siliculosus-1a_F_contig1344:30193..31248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size309
Model size309
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927860.2400486-CDS-E-siliculosus-1a_F_contig1344:30192..304511622927860.2400486-CDS-E-siliculosus-1a_F_contig1344:30192..30451Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1344 30193..30451 -
1696318712.5064356-CDS-E-siliculosus-1a_F_contig1344:30192..304511696318712.5064356-CDS-E-siliculosus-1a_F_contig1344:30192..30451Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1344 30193..30451 -
1622927860.2515576-CDS-E-siliculosus-1a_F_contig1344:31198..312481622927860.2515576-CDS-E-siliculosus-1a_F_contig1344:31198..31248Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1344 31199..31248 -
1696318712.5161052-CDS-E-siliculosus-1a_F_contig1344:31198..312481696318712.5161052-CDS-E-siliculosus-1a_F_contig1344:31198..31248Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1344 31199..31248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1344.2060.1prot_E-siliculosus-1a_F_contig1344.2060.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1344 30193..31248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1344.2060.1

>prot_E-siliculosus-1a_F_contig1344.2060.1 ID=prot_E-siliculosus-1a_F_contig1344.2060.1|Name=mRNA_E-siliculosus-1a_F_contig1344.2060.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=103bp
FSPRTPISRIEGRESRRCVGSAAPAPVAVLAEALWRAEENRSENMRRAVV
IEAPAAMRTTREEAAGTKPKEAHVCINRKINAGHLPEAGQAPVIVTTAAG
QAA
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1344:30193..31248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1344.2060.1 ID=mRNA_E-siliculosus-1a_F_contig1344.2060.1|Name=mRNA_E-siliculosus-1a_F_contig1344.2060.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1056bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1344:30193..31248- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTTCACCAAGGACTCCCATCTCAAGGATTGAAGGCAGAGAGAGTCGAAG
GTGAGAGAGAAAGCTCGCCACTCGCCAGTAACCCTTAGTAGCCCGCCAAA
ATGCCGTAGTGCACCTTCCGCATTTCGACAAGCTCGATTGCATCGCAGAT
CACTGGAGCACCTGTTGAGAGGTGAGGCTGCTGCTGTAGGGAGAGACGCG
CACAGACAGCAGCGAGACAGGGGCCACCAATGGCATATGGGTGACATAGC
TCGGCGCGATGTCCCAGACCACATATTTTCCAACCTCCCGATTTGTAGTT
TTACCAAACTTGAAATCTTGAGCGATCTACGTATGCATAGTCTAGCACAC
AGGTCCAGCAGTTCGACTCAGGTTGCGTAGGACATCACACCCCCTGGACC
GATTTTCAATGCTGGAATATTCTATAGAAAAAGCAGTAACGGAGCTGAAA
ATGCAGGGACCGTTGTAAAGAACAAGGAAAATGGGGGAGTTAGAGCCTCA
TCGTCAAGAGCTTTCCAAACACGTATTGTTTGGTTTTGGCATCCTCTTCC
TCGTGGAGTAATCGCGCTTTGAAAAATCGGTCCAGGGGGTGTGGTATCTT
ACGCAACCAACGGTGCGCTTTGCACGCAAAGTTCGGTTGCGGCAGTTGGT
TCCACACACCAAATCCCGCCTATAACGCCGTCGCACCAGGTTTTTCACTG
CCCACAACACCACCATCTCGAGCCCTTTCCAACCCATACTTGTGTCAGGC
AACATTTAGTCTACTGTTCTGTCCCATTCTGATGCTTCGGCCTGCAGATG
CGTAGGAAGCGCAGCACCAGCACCAGTAGCAGTTCTGGCGGAAGCGTTGT
GGCGTGCGGAAGAGAATCGAAGCGAAAACATGCGTCGTGCCGTGGTCATC
GAAGCTCCAGCAGCAATGCGGACAACGAGAGAGGAGGCAGCAGGGACCAA
GCCAAAGGAGGCACACGTGTGCATAAATCGAAAAATCAATGCCGGACATC
TACCCGAGGCAGGTCAGGCACCAGTAATCGTAACAACAGCAGCAGGTCAA
GCCGCC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1344:30193..31248-

>mRNA_E-siliculosus-1a_F_contig1344.2060.1 ID=mRNA_E-siliculosus-1a_F_contig1344.2060.1|Name=mRNA_E-siliculosus-1a_F_contig1344.2060.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1344:30193..31248- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTTCACCAAGGACTCCCATCTCAAGGATTGAAGGCAGAGAGAGTCGAAG
TTTTCACCAAGGACTCCCATCTCAAGGATTGAAGGCAGAGAGAGTCGAAG
ATGCGTAGGAAGCGCAGCACCAGCACCAGTAGCAGTTCTGGCGGAAGCGT
TGTGGCGTGCGGAAGAGAATCGAAGCGAAAACATGCGTCGTGCCGTGGTC
ATCGAAGCTCCAGCAGCAATGCGGACAACGAGAGAGGAGGCAGCAGGGAC
CAAGCCAAAGGAGGCACACGTGTGCATAAATCGAAAAATCAATGCCGGAC
ATCTACCCGAGGCAGGTCAGGCACCAGTAATCGTAACAACAGCAGCAGGT
CAAGCCGCCATGCGTAGGAAGCGCAGCACCAGCACCAGTAGCAGTTCTGG
CGGAAGCGTTGTGGCGTGCGGAAGAGAATCGAAGCGAAAACATGCGTCGT
GCCGTGGTCATCGAAGCTCCAGCAGCAATGCGGACAACGAGAGAGGAGGC
AGCAGGGACCAAGCCAAAGGAGGCACACGTGTGCATAAATCGAAAAATCA
ATGCCGGACATCTACCCGAGGCAGGTCAGGCACCAGTAATCGTAACAACA
GCAGCAGGTCAAGCCGCC
back to top