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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig134.2045.1 vs. uniprot
Match: D8LLL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLL4_ECTSI) HSP 1 Score: 324 bits (830), Expect = 1.230e-107 Identity = 200/255 (78.43%), Postives = 201/255 (78.82%), Query Frame = 2
Query: 59 MAEVFSSNSPCMLGKRVLSPHSHGTLMGGQLDFSSKKRRLGQGLDQAGSFDRSESDXXXXXXXXXXPSPVRAGKRARPLSPLQPSAHFPSGGAAAGEAAXXXRGGSGFFGGGSFSHQXXXXXXQRAHRTGAEDGELAALRREVGALRAHAAEKESGLNMAREENGRLKEGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGASDFMGGQRPPDVF 823
MAEVFSSNSPCMLGKRVLSPHSHGTLMGGQLDFSSKKRRLGQGLDQ GSFDRSESD XXXXXXXX PSPVRAGKRARPLSPLQPSAHF SGGA GEAA RG SG FGGGSFS Q QRA RTGAEDGELAALRREV L+AHAAEKESGLNMAREENGRLKEGVG LHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGASDFMGGQRPPDVF
Sbjct: 1 MAEVFSSNSPCMLGKRVLSPHSHGTLMGGQLDFSSKKRRLGQGLDQ-GSFDRSESDQXXXXXXXX-PSPVRAGKRARPLSPLQPSAHFSSGGA--GEAASASRG-SGLFGGGSFSQQHQHQ--QRAQRTGAEDGELAALRREVAVLQAHAAEKESGLNMAREENGRLKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGASDFMGGQRPPDVF 248
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 897 |
| Model size | 1070 |
| Exons | 4 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927857.5746164-UTR-E-siliculosus-1a_F_contig134:18130..18303 | 1622927857.5746164-UTR-E-siliculosus-1a_F_contig134:18130..18303 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig134 18131..18303 + |
| 1696318711.0090396-UTR-E-siliculosus-1a_F_contig134:18130..18303 | 1696318711.0090396-UTR-E-siliculosus-1a_F_contig134:18130..18303 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig134 18131..18303 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig134.2045.1 >prot_E-siliculosus-1a_F_contig134.2045.1 ID=prot_E-siliculosus-1a_F_contig134.2045.1|Name=mRNA_E-siliculosus-1a_F_contig134.2045.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=299bp
KGAGACCRPASRAEENHRSDGRGIQQQLALHAGEARPESPLARHLDGGPA
RLFIQETKTRSRPRSSRLVRPKRIRPAAAAAAAAVAVAGAGGQARTPALA
PAAVCPLPFGRSSSRGGGLLLPWWLRIFWRRLLFAPAPAPAPAESPQDGG
GGRRAGSSTARGWSPAGARGGEGERSQHGARGERSAEGRRGDVPEGARAT
LRGEPYPQACRRDPKHQGQGAGGPAARAPAGGGAGGGVREAARADELRPL
RARAGHGKLGSERLHGRPAPPGRVLSFQRRVRFEGDDGDDDDVGGGSA* back to topmRNA from alignment at E-siliculosus-1a_F_contig134:13475..18303+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig134.2045.1 ID=mRNA_E-siliculosus-1a_F_contig134.2045.1|Name=mRNA_E-siliculosus-1a_F_contig134.2045.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4829bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig134:13475..18303+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAAGGAGCGGGTGCTTGCTGTCGTCCAGCTAGCCGGGCGGAGGAGAACCA
TCGCAGCGATGGCAGAGGTATTCAGCAGCAACTCGCCCTGCATGCTGGGG
AAGCGCGTCCTGAGTCCCCACTCGCACGGCACCTTGATGGGGGGCCAGCT
AGACTTTTCATCCAAGAAACGAAGACTCGGTCAAGGCCTCGATCAAGGTG
AGATTCGGTCGGTCGGCCGCTCGCTCGCTCGAACGTGTGCTCTTTCTGAC
CCTCGCGTTATAGCCTCGGCGTTCCCGTTGCGAACCTCTCCATGTCACAG
GTAGACCCTTTGGTCCTTCCCCACAGCAGTAGGTCGGGCTTATTTCCTTC
CCCCGGGGCTCATCGCAAAAGCCTGTCAGGCATATCGATGGTGCACGAAC
GAACGTGCTCTCTCCCATTCTCACTTGTTTTTACAGAGGCAACAAGCGAC
GACGTAAAACACTATTTTTGGTACGACACACTTCCGACCAGCTCTTGTTG
TCCCAACATCCTATTATAGACCGCTCACGCTTGTTTTACGCGTGTACACG
CCGCTGCTCTCGTCCTGAGCAGGCTCGTTCGACCGAAGCGAATCCGACCA
GCAGCAGCAGCAGCAGCAGCAGCGGTCGCCGTCGCCGGTGCGGGCGGGCA
AGCGCGCACGCCCGCTCTCGCCCCTGCAGCCGTCTGCCCACTTCCCTTCG
GGAGGAGCAGCAGCAGGGGAGGCGGCCTCCTCCTCCCGTGGTGGCTCCGG
ATTTTTTGGCGGCGGCTCCTTTTCGCACCAGCACCAGCACCAGCACCAGC
AGAGAGCCCACAGGACGGGGGCGGAGGACGGCGAGCTGGCAGCTCTACGG
CGCGAGGTCAGTTTGATTCGGGGCAGTGGCGCGCCACAAATATTTCGCCG
TCTTTCATATTGTTAGTCCATGTGTGTGCGTCGCGTTTGGACAACGTTCG
GGCACACGAACAAAAGGAGGCACCAAGTGCGCGACGCCCATCATCTCCTA
TAACGCTGTGGTACCGTACAAGTTGCAGGCTTGGGGAGTTACGCAACGGC
GGTAGGGATCGGAGCGCGTGGTAAAGGCAGGGCACACACACATCAACCTG
TGGGGTGTGTTGTTCTACTTGGTAATTGAAGCATATATTTCCCTCACCAT
GTTGCAAGTTCACAACACCAACGTTAGCAGGATACTGACGAGGGCCGTCA
TAATCCAATTGCATGCGCCTTCTGTACACAAGTCTGTGTCGTCTCTGCAT
ATGCATTGGACGAAGCAGGACACGGGGGGGGGGGGCGTCATAGATGCCCG
CAGCAAGCATGCCGACGATTGCTGGTGTCCGGGCATGTCGCTGGTGTATA
TTCATTCACCCATGATGTGTTCTTGGTTATTTATTTTGCGCCCGCATATA
TCTCTTCCGAGATGGAGTTTTGCGTATCTGGTATATACCCGCCTCCGTGC
CGTGGGTTGCCCTTCCGAACCATTGGAGGTCCGGTATTTCCGCGTGGTAT
TGTAGCAGGTCCGCAAGGGAATCCGGGTCCGTCCCAGGGCGAGCAGCACC
TAGTCGTTTTGCGATGCTACTGTATGCATATGCAATATGCTCTTAAGAAC
TCTCTGTGTCAAACCTACTGCTGCTGTAGAGGCGTGCCCCGCCCCAACAA
CTGGAGCGGGTGACTTAGCCGCGAACAGATACTTAATAGTATTAAGGATA
AATAAATACACGCACATTAATAATAATATTAAAATTAATAGTATAAAGTA
GACCCAATGAAGCCCTTGACAACCAAGGGGGCGAAGCCATACCACGTCGA
ATTACTTGCAGAGAGGTGGGTCACCCGACACGACATGAAAGCCCTGCCTT
CTTATCGATTCGTTGAGGCTGCGTGCGGGCGTTTATCCGGTTATTCGCCC
CAAGGCGTTTTTATTCGCCGCGAGTTTTCTCAGGTCTCCCTTGTCACCTA
CGAAGTGCTAATGATGAGCAACACACTGAACGTCGTTTGGAATCCCTTGT
CGATCGGCGTGAAACCGGGTTGACGCGGAGATAAAAAACGCGTCTGTCTG
TTTTGTGTTGGTTGTGTGGTGCCGTAAATGTCGAAGAAAGTGGCACCCCC
GTGTTTAGCGTTTTCTTACGGCGTTTTTCTCCACAGCCAGGTACAGGTAC
AACTGCCAAAGAGGTGTGGTGTTGGAATTGTCTCGTCGAGGAGAGAGGTA
TTGGTTGGTGTTCGCACCCTCGTACGCATACATAGTTGTGGAGACACACG
CTATAAAACACCGGTCAAAACGTGGGCGCCATCTTTCCTCCGACTCTTGC
GGATCATGAGTTCCCAGCACACGGAAGAATCGCGGTGCAACCATGGGCTA
GGCATTTTGCTTCCTGTGCCAACAAATTCGGGTGGGGCGTCATGGAGAGC
GCTCCCAGTGTTGTAAATAGTGTATTCCACGATCGGCCATCGGGTGCCGC
CTCGATAACCAACCTACCTACCCCGAGTTACTTGCTGCTAAATGCCGGCG
CCGGTTGGATGGCGTGTGACTGGAAATACTACTGGTGTGCTTGCATGCAT
ACCTCTGTTTGGTTGCTGCCTTTGCGTTCGCATGTAAAAGGCAGGCACCG
CAGGGGAAACGGTGGGGCAATAAAACAAAACACCAAAAGAAGCTCCTGTG
TGACGTTCCTCTCGTGTTACCCCGGCTGATATGTCAGGTATATACGCCGA
AAGACCTGTAGACCGGCCCCAGAAAAGATGGGACGACCACACACACATCA
TAGTTAATGGAATTTAGAAGTGTTTCGTGTTTTCAACCTCACTGAGACTG
ACGTCTCTTCACTGGTCGGCCGGTTAGCGCGGTCGATGCTAATACTCTAA
TAATAGAGACACACACACGGAAAGCTGTGACGTAGAGTCTAGACACCGCC
GTCGTTCGCTGCTACAAACGGCACTGGTAGATGATGCAAAGGCTGTACCG
TGGTGTGGTGCTTTTCTTTGTCAAGCCACGCAAATGACAGCGCACAACCT
TTGCTGGCCTGAAAAGCGAACGCGTGGGGAGTCCGGTGGGCACTACGCTT
CCGTGCCACAAACAGCTGGCGGCCGCAAGAGGCTGACGATTCCGCCGATG
CTGCTACTACTGCTGCGTACCGTGAAAGTACTGACGATCGCACGGGTGTC
CCAAGTGCGCGTACGCGATCGATTTTTAGAGATCGATTTCTCCACATCCA
AAGGGGGTGCGAGATCCACACCCCCTTCTTGACGTTGGTAGCCGGTTGGT
TGTGGAGCAATCGAGGTTTTAAATCAAATCGGCCGCACGCCTTCGCACTC
ATTCACCCCGCGTTACGGCAAGTAGTGCTGTAGTCCGAACCCCCTTGTAC
GCCTTCCAATCAACTCCTCGTGTTTCTCCGCCTTGCGGAATCGACACTAC
ACATATAGGTTGGAGCCCTGCGCGAGTCAGCCCCTTGAACCAATTTCTCG
TGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGNNNNNNNNNTTTTCCCCCT
CCCGGAGCACGCACTCCACCCATTGGTCGGGACCCCGCGCCGGGCCCCCC
CCCCCACCCATTTCCCGCGCCCCCCCCCCCCCCCCCTCCCACCGCTTGTT
GAACCGACGTGCACACGCAGGTTGGAGCCCTGCGGGCGCACGCGGCGGAG
AAGGAGAGCGGTCTCAACATGGCGCGCGAGGAGAACGGTCGGCTGAAGGA
AGGCGTGGGGATGTTCCAGAAGGAGCTCGAGCGACTCTCCGCGGAGAACC
GTATCCTCAAGCGTGCCGTCGGGATCCAAAACACCAAGGGCAAGGAGGTG
GGTTTGGGTTTGGGTTTGGGTTTGGATAGGGAAACGGCTGCGGCGGCGCT
TTTTGTTGTGTGCGGGATGATTTGCATCCAAGCGTTTGTTGGATTTGTTG
TTGGAAGAGTTTTCTGCGGCGTGGGTACCCCCTCGACTGACGGTAGGTAC
GGCGGGGCCCCCACTGCTGCTGGTGTGGCTGCAGGCATGGAAGTATTTGC
GGTTTGTAGGCTGTTCTGGTGTGCATGCGGTTTGGCGTTTTTTTAGCAAG
CTGGTGGTCCCCGCGTGGCACTCTTCGGCGGTGCCACCCCGTAAGGACGA
AATTCCAAGGTGAAAGAGGGAGGAGGAACAAAAAAGCGGTGAATACGGGA
AGAAAACTGACAGATGGATGCTTGTGGGGGTCCATGCGCCGACCACGGAC
AATCAAATTCTTCGTTGTACTGCTACGGTTTGCCCTCCACGGGACACGAC
ACTCACGCCGTCCTCTCCGTTTCTGCTGCCTCCGCAGTGTGTTCGTGCGA
AACTTAATTTTGAGTCGCCTGCCCCTGTTTGTATGCGTACGCACACCTCG
TTGCCTCTTGCTTTGTACAGCTGGAGGGCCAGCTGCACGGGCTCCAGCAG
GCGGCGGGGCAGGCGGCGGAGTACGTGAAGCGGCTCGAGCAGACGAACTA
CGCCCTCTCCGTGCGCGTGCAGGCCATGGGAAACTCGGGAGCGAGCGACT
TCATGGGCGGCCAGCGCCCCCCGGACGTGTTTTGAGTTTCCAACGACGCG
TGCGCTTTGAAGGCGACGACGGCGACGACGACGATGTCGGGGGCGGGTCG
GCGTGACGTCACGGAGGGAGTGAGGGACGGCGAAAGAGTGCTGCCGTAGT
GTGCTGTTTCGTAACTGTACGGGCAGCTGGAGAGGGAGGACGCAACCGGA
GGGGGTAGGGGTGCTGCAACATTGATGCTCTTCTGCGCCTCGCATGGTGA
TTCTAGATAAGAAGGCAGGTGGGAGGGGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig134:13475..18303+ >mRNA_E-siliculosus-1a_F_contig134.2045.1 ID=mRNA_E-siliculosus-1a_F_contig134.2045.1|Name=mRNA_E-siliculosus-1a_F_contig134.2045.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1794bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig134:13475..18303+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAAGGAGCGGGTGCTTGCTGTCGTCCAGCTAGCCGGGCGGAGGAGAACCA
TCGCAGCGATGGCAGAGGTATTCAGCAGCAACTCGCCCTGCATGCTGGGG
AAGCGCGTCCTGAGTCCCCACTCGCACGGCACCTTGATGGGGGGCCAGCT
AGACTTTTCATCCAAGAAACGAAGACTCGGTCAAGGCCTCGATCAAGAAA
GGAGCGGGTGCTTGCTGTCGTCCAGCTAGCCGGGCGGAGGAGAACCATCG
CAGCGATGGCAGAGGTATTCAGCAGCAACTCGCCCTGCATGCTGGGGAAG
CGCGTCCTGAGTCCCCACTCGCACGGCACCTTGATGGGGGGCCAGCTAGA
CTTTTCATCCAAGAAACGAAGACTCGGTCAAGGCCTCGATCAAGCAGGCT
CGTTCGACCGAAGCGAATCCGACCAGCAGCAGCAGCAGCAGCAGCAGCGG
TCGCCGTCGCCGGTGCGGGCGGGCAAGCGCGCACGCCCGCTCTCGCCCCT
GCAGCCGTCTGCCCACTTCCCTTCGGGAGGAGCAGCAGCAGGGGAGGCGG
CCTCCTCCTCCCGTGGTGGCTCCGGATTTTTTGGCGGCGGCTCCTTTTCG
CACCAGCACCAGCACCAGCACCAGCAGAGAGCCCACAGGACGGGGGCGGA
GGACGGCGAGCTGGCAGCTCTACGGCGCGAGCAGGCTCGTTCGACCGAAG
CGAATCCGACCAGCAGCAGCAGCAGCAGCAGCAGCGGTCGCCGTCGCCGG
TGCGGGCGGGCAAGCGCGCACGCCCGCTCTCGCCCCTGCAGCCGTCTGCC
CACTTCCCTTCGGGAGGAGCAGCAGCAGGGGAGGCGGCCTCCTCCTCCCG
TGGTGGCTCCGGATTTTTTGGCGGCGGCTCCTTTTCGCACCAGCACCAGC
ACCAGCACCAGCAGAGAGCCCACAGGACGGGGGCGGAGGACGGCGAGCTG
GCAGCTCTACGGCGCGAGGTTGGAGCCCTGCGGGCGCACGCGGCGGAGAA
GGAGAGCGGTCTCAACATGGCGCGCGAGGAGAACGGTCGGCTGAAGGAAG
GCGTGGGGATGTTCCAGAAGGAGCTCGAGCGACTCTCCGCGGAGAACCGT
ATCCTCAAGCGTGCCGTCGGGATCCAAAACACCAAGGGCAAGGAGGTTGG
AGCCCTGCGGGCGCACGCGGCGGAGAAGGAGAGCGGTCTCAACATGGCGC
GCGAGGAGAACGGTCGGCTGAAGGAAGGCGTGGGGATGTTCCAGAAGGAG
CTCGAGCGACTCTCCGCGGAGAACCGTATCCTCAAGCGTGCCGTCGGGAT
CCAAAACACCAAGGGCAAGGAGCTGGAGGGCCAGCTGCACGGGCTCCAGC
AGGCGGCGGGGCAGGCGGCGGAGTACGTGAAGCGGCTCGAGCAGACGAAC
TACGCCCTCTCCGTGCGCGTGCAGGCCATGGGAAACTCGGGAGCGAGCGA
CTTCATGGGCGGCCAGCGCCCCCCGGACGTGTTTTGAGTTTCCAACGACG
CGTGCGCTTTGAAGGCGACGACGGCGACGACGACGATGTCGGGGGCGGGT
CGGCGTGACTGGAGGGCCAGCTGCACGGGCTCCAGCAGGCGGCGGGGCAG
GCGGCGGAGTACGTGAAGCGGCTCGAGCAGACGAACTACGCCCTCTCCGT
GCGCGTGCAGGCCATGGGAAACTCGGGAGCGAGCGACTTCATGGGCGGCC
AGCGCCCCCCGGACGTGTTTTGAGTTTCCAACGACGCGTGCGCTTTGAAG
GCGACGACGGCGACGACGACGATGTCGGGGGCGGGTCGGCGTGA back to top
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