mRNA_E-siliculosus-1a_F_contig134.2043.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig134.2043.1
Unique NamemRNA_E-siliculosus-1a_F_contig134.2043.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig134.2043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig134contigE-siliculosus-1a_F_contig134:6276..6669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size306
Model size394
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig134.2043.1prot_E-siliculosus-1a_F_contig134.2043.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig134 6294..6599 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927857.6127765-UTR-E-siliculosus-1a_F_contig134:6275..62931622927857.6127765-UTR-E-siliculosus-1a_F_contig134:6275..6293Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig134 6276..6293 +
1696318711.0254614-UTR-E-siliculosus-1a_F_contig134:6275..62931696318711.0254614-UTR-E-siliculosus-1a_F_contig134:6275..6293Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig134 6276..6293 +
1622927857.6361103-UTR-E-siliculosus-1a_F_contig134:6599..66691622927857.6361103-UTR-E-siliculosus-1a_F_contig134:6599..6669Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig134 6600..6669 +
1696318711.04863-UTR-E-siliculosus-1a_F_contig134:6599..66691696318711.04863-UTR-E-siliculosus-1a_F_contig134:6599..6669Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig134 6600..6669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927857.6237152-CDS-E-siliculosus-1a_F_contig134:6293..65991622927857.6237152-CDS-E-siliculosus-1a_F_contig134:6293..6599Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig134 6294..6599 +
1696318711.0373437-CDS-E-siliculosus-1a_F_contig134:6293..65991696318711.0373437-CDS-E-siliculosus-1a_F_contig134:6293..6599Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig134 6294..6599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig134.2043.1

>prot_E-siliculosus-1a_F_contig134.2043.1 ID=prot_E-siliculosus-1a_F_contig134.2043.1|Name=mRNA_E-siliculosus-1a_F_contig134.2043.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=102bp
MRITLLWQRRDFIFYHSRLACGMEHGIPTDLYSPYAVHCTHFKAHRQCSS
SVTAESVVMFVFAHRSAARSSRLFFGFPSSPTNLVCDCVSCVPISRVWLH
Q*
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mRNA from alignment at E-siliculosus-1a_F_contig134:6276..6669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig134.2043.1 ID=mRNA_E-siliculosus-1a_F_contig134.2043.1|Name=mRNA_E-siliculosus-1a_F_contig134.2043.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=394bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig134:6276..6669+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTGTGCTTTTTTTTTAAATGCGTATTACACTCCTGTGGCAAAGGCGTGA
TTTCATTTTTTACCATTCCCGCCTTGCTTGCGGGATGGAGCACGGTATCC
CCACGGACCTTTATTCACCGTACGCCGTACATTGTACGCATTTTAAAGCA
CACCGTCAGTGTAGTTCTTCAGTTACGGCAGAGAGTGTTGTCATGTTTGT
TTTTGCGCATCGATCGGCAGCGCGTTCTTCGCGCCTATTCTTTGGGTTTC
CTTCAAGCCCAACCAATCTGGTTTGCGATTGTGTGTCTTGTGTCCCAATA
AGTAGGGTATGGTTGCATCAATAACTTCTTTGCTCACACATGCAACTTTT
TTGCGACGTATTGTTTTTGTTTGACATATTATTGAGTGAGGAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig134:6276..6669+

>mRNA_E-siliculosus-1a_F_contig134.2043.1 ID=mRNA_E-siliculosus-1a_F_contig134.2043.1|Name=mRNA_E-siliculosus-1a_F_contig134.2043.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig134:6276..6669+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGTATTACACTCCTGTGGCAAAGGCGTGATTTCATTTTTTACCATTC
CCGCCTTGCTTGCGGGATGGAGCACGGTATCCCCACGGACCTTTATTCAC
CGTACGCCGTACATTGTACGCATTTTAAAGCACACCGTCAGTGTAGTTCT
TCAGTTACGGCAGAGAGTGTTGTCATGTTTGTTTTTGCGCATCGATCGGC
AGCGCGTTCTTCGCGCCTATTCTTTGGGTTTCCTTCAAGCCCAACCAATC
TGGTTTGCGATTGTGTGTCTTGTGTCCCAATAAGTAGGGTATGGTTGCAT
CAATAAATGCGTATTACACTCCTGTGGCAAAGGCGTGATTTCATTTTTTA
CCATTCCCGCCTTGCTTGCGGGATGGAGCACGGTATCCCCACGGACCTTT
ATTCACCGTACGCCGTACATTGTACGCATTTTAAAGCACACCGTCAGTGT
AGTTCTTCAGTTACGGCAGAGAGTGTTGTCATGTTTGTTTTTGCGCATCG
ATCGGCAGCGCGTTCTTCGCGCCTATTCTTTGGGTTTCCTTCAAGCCCAA
CCAATCTGGTTTGCGATTGTGTGTCTTGTGTCCCAATAAGTAGGGTATGG
TTGCATCAATAA
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