mRNA_E-siliculosus-1a_F_contig1337.2036.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1337.2036.1
Unique NamemRNA_E-siliculosus-1a_F_contig1337.2036.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1337.2036.1 vs. uniprot
Match: D8LM34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM34_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.060e-49
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:   58 MEDFQMPEDLGNLSSLQVEKAGRFCASPDLPSLADETPDRLNDLLDSLRARLTEGDADALSEQENFDDLFSLVRDFKHLRSEIKGRVLSV 327
            MEDFQMPEDLGNLSSLQVEKAGRFCASPDLPSLADETPDRLNDLLDSLRARLTEGDADALSEQENFDDLFSLVRDFKHLRSEIKGRVLSV
Sbjct:    1 MEDFQMPEDLGNLSSLQVEKAGRFCASPDLPSLADETPDRLNDLLDSLRARLTEGDADALSEQENFDDLFSLVRDFKHLRSEIKGRVLSV 90
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1337.2036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM34_ECTSI3.060e-49100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1337contigE-siliculosus-1a_F_contig1337:27449..28312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size327
Model size330
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.D
EggNOG OGsCOG5098@1,KOG0414@2759
EggNOG free text desc.mitotic chromosome condensation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000793,GO:0000794,GO:0000796,GO:0000797,GO:0000799,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010032,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030466,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035327,GO:0040029,GO:0042393,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045120,GO:0045132,GO:0045143,GO:0045786,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051445,GO:0051447,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1902679,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
KEGG Pathwayko04111,map04111
KEGG koko:K06677
Preferred nameNCAPD2
Seed eggNOG ortholog2880.D8LM34
Seed ortholog evalue2.5e-42
Seed ortholog score177.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927856.3832405-CDS-E-siliculosus-1a_F_contig1337:27448..277261622927856.3832405-CDS-E-siliculosus-1a_F_contig1337:27448..27726Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1337 27449..27726 +
1696318710.375345-CDS-E-siliculosus-1a_F_contig1337:27448..277261696318710.375345-CDS-E-siliculosus-1a_F_contig1337:27448..27726Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1337 27449..27726 +
1622927856.3954182-CDS-E-siliculosus-1a_F_contig1337:28262..283111622927856.3954182-CDS-E-siliculosus-1a_F_contig1337:28262..28311Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1337 28263..28311 +
1696318710.3848712-CDS-E-siliculosus-1a_F_contig1337:28262..283111696318710.3848712-CDS-E-siliculosus-1a_F_contig1337:28262..28311Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1337 28263..28311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1337.2036.1prot_E-siliculosus-1a_F_contig1337.2036.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1337 27449..28311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1337.2036.1

>prot_E-siliculosus-1a_F_contig1337.2036.1 ID=prot_E-siliculosus-1a_F_contig1337.2036.1|Name=mRNA_E-siliculosus-1a_F_contig1337.2036.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=109bp
ERASELRVCCSSTPTAPSTMEDFQMPEDLGNLSSLQVEKAGRFCASPDLP
SLADETPDRLNDLLDSLRARLTEGDADALSEQENFDDLFSLVRDFKHLRS
EIKGRVLSV
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mRNA from alignment at E-siliculosus-1a_F_contig1337:27449..28312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1337.2036.1 ID=mRNA_E-siliculosus-1a_F_contig1337.2036.1|Name=mRNA_E-siliculosus-1a_F_contig1337.2036.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1337:27449..28312+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGCGTGCGAGCGAGCTGCGAGTGTGCTGCTCATCCACGCCAACAGCACC
CTCCACCATGGAGGACTTTCAGATGCCTGAGGACCTGGGCAACCTGTCGT
CCTTGCAGGTCGAGAAAGCGGGTCGGTTCTGCGCCTCGCCGGACCTCCCA
AGCTTGGCAGACGAGACTCCGGACCGGCTGAACGACCTCTTGGATAGCTT
GCGCGCGAGGCTCACTGAAGGCGACGCCGACGCACTCTCGGAGCAGGAGA
ACTTCGACGACTTGTTTTCGCTAGTCCGGTCAGTGCCTGTGCTTTGCGCG
TCTCTTGCCATCCCTTCGGCGGAGGTGTCCGTAGCAGATATGAAGTGTAC
CATTGTAGCATCTTTGTGTTTTGGCAGCAACAGCAGACAGCAAGCTGTTA
TCTGCGTGACTGCTGTATGTAGCGCCTTGCTTGCTTTGTGTACTGCTGCG
GTGATGATAACAGGTACGTGCTGACGGTCTAATTTCCCACTAAAGGCGTA
GTATTTAAGCCCCTTCGTACAGCAGCCTCCATGCCCTTCTTCCTGACCTG
TAGACCAGCAACTCCTTGTTCAGTTGCTTGAAATGCGGTCCATCTTCAGC
AGCTTGTCCAACACCAATTTCGCCCACCTGTTGACTACTGGCGGGAGGTC
TGCAAGTACTGCCGCAGCAGCAGCAGCAGCATCAGCGAGCACCAATACGC
CTCCAATAAGCACTGATCAAGCGAAAGTCGTGGACCCTACTGGATTTGCA
AGTCTATCCGAACATCATGAAAAACCCGACAATCATGCCACATAACCCCG
CGACACGCACACAGCGACTTCAAGCACCTGCGCAGCGAGATCAAGGGGAG
AGTTTTGAGCGTCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1337:27449..28312+

>mRNA_E-siliculosus-1a_F_contig1337.2036.1 ID=mRNA_E-siliculosus-1a_F_contig1337.2036.1|Name=mRNA_E-siliculosus-1a_F_contig1337.2036.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1337:27449..28312+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGCGTGCGAGCGAGCTGCGAGTGTGCTGCTCATCCACGCCAACAGCACC
CTCCACCATGGAGGACTTTCAGATGCCTGAGGACCTGGGCAACCTGTCGT
CCTTGCAGGTCGAGAAAGCGGGTCGGTTCTGCGCCTCGCCGGACCTCCCA
AGCTTGGCAGACGAGACTCCGGACCGGCTGAACGACCTCTTGGATAGCTT
GCGCGCGAGGCTCACTGAAGGCGACGCCGACGCACTCTCGGAGCAGGAGA
ACTTCGACGACTTGTTTTCGCTAGTCCGGAGCGTGCGAGCGAGCTGCGAG
TGTGCTGCTCATCCACGCCAACAGCACCCTCCACCATGGAGGACTTTCAG
ATGCCTGAGGACCTGGGCAACCTGTCGTCCTTGCAGGTCGAGAAAGCGGG
TCGGTTCTGCGCCTCGCCGGACCTCCCAAGCTTGGCAGACGAGACTCCGG
ACCGGCTGAACGACCTCTTGGATAGCTTGCGCGCGAGGCTCACTGAAGGC
GACGCCGACGCACTCTCGGAGCAGGAGAACTTCGACGACTTGTTTTCGCT
AGTCCGCGACTTCAAGCACCTGCGCAGCGAGATCAAGGGGAGAGTTTTGA
GCGTCCGACTTCAAGCACCTGCGCAGCGAGATCAAGGGGAGAGTTTTGAG
CGTC
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