mRNA_E-siliculosus-1a_F_contig1334.2018.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE) HSP 1 Score: 263 bits (672), Expect = 2.150e-83 Identity = 129/146 (88.36%), Postives = 138/146 (94.52%), Query Frame = -3
Query: 81 MASGFDDLLPATVLSVALSALHQVQQRSRTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELKVSSFLS 518
MASGFDDLLP+TVLSVALSALHQVQQRSRT RT+AQW VALRAFDDAFEWED+GEQDGPPVKR R+VKERRDWSTSAWWLQLQN DLLDHTT+AAKVFRTRFRVPHAFFLELVKMARGK+WF EKDAVGR+GIPIELK+SS+ S
Sbjct: 1 MASGFDDLLPSTVLSVALSALHQVQQRSRTHRTLAQWAVALRAFDDAFEWEDSGEQDGPPVKRSRQVKERRDWSTSAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSYRS 146
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5J9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W9_9PHAE) HSP 1 Score: 254 bits (650), Expect = 1.510e-77 Identity = 124/140 (88.57%), Postives = 131/140 (93.57%), Query Frame = -3
Query: 99 MASGFDDLLPATVLSVALSALHQVQQRSRTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELK 518
MASGFDDLLPATVLSVALSALHQVQ+RSRT RTMAQWEVALRAFDDAFEWED+GEQDGPPVKR R+VKER+DWSTSAWWLQLQ+ LLDH TDAAK FRTRFRVPHAFFLELVK+ARGKRWF GE+DA GRQGIPIELK
Sbjct: 1 MASGFDDLLPATVLSVALSALHQVQKRSRTHRTMAQWEVALRAFDDAFEWEDSGEQDGPPVKRSRQVKERKDWSTSAWWLQLQDAALLDHATDAAKAFRTRFRVPHAFFLELVKLARGKRWFSRGEQDAAGRQGIPIELK 140
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE) HSP 1 Score: 248 bits (634), Expect = 3.330e-77 Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = -3
Query: 99 GFDDLLPATVLSVALSALHQVQQRSRTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELK 509
GFDDLLP+TVLSVALSALHQVQQRSRT RT+AQW VALRAFDDAFEWED+GEQDGPPVKR R+VKERR+WSTSAWWLQLQN DLLDHTT+ AKVF TRFRVPHAFFLELVKMARGK+WF EKDAVGRQGIPIELK
Sbjct: 196 GFDDLLPSTVLSVALSALHQVQQRSRTHRTLAQWAVALRAFDDAFEWEDSGEQDGPPVKRSRQVKERRNWSTSAWWLQLQNADLLDHTTEEAKVFHTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRQGIPIELK 332
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5K4P1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4P1_9PHAE) HSP 1 Score: 190 bits (482), Expect = 9.310e-59 Identity = 103/140 (73.57%), Postives = 109/140 (77.86%), Query Frame = -3
Query: 99 MASGFDDLLPATVLSVALSALHQVQQRSRTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELK 518
MASGFDDLLP+TVLSVALSALHQVQQRSRT RT+AQW VALRAFDDAFEWED+GEQD PPVKR R+ W+T AAKVFRTRFRVPHAFFLELVKMARGK+WF EKDAVGRQGIPIELK
Sbjct: 1 MASGFDDLLPSTVLSVALSALHQVQQRSRTHRTLAQWAVALRAFDDAFEWEDSGEQDCPPVKRSRQTC----WTTPQ---------------KAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRQGIPIELK 121
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 161 bits (408), Expect = 8.570e-45 Identity = 86/139 (61.87%), Postives = 103/139 (74.10%), Query Frame = -3
Query: 96 DDLLPATVLSVALSALHQVQQ---RSRTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELKV 503
DDL A VLSVAL+ALHQ+Q+ R RT R+++ W+ L FD+ + ED E GP VKR RRV +RRDW TSAWW +LQ+ DL DHTT AAKVFR RFRVP+ FF ELVK++R KRWF GEKDA R+GIP+ELKV
Sbjct: 5 DDLFEAAVLSVALAALHQIQEEDGRRRTARSVSYWDAVL--FDE--DSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKV 139
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE) HSP 1 Score: 152 bits (384), Expect = 1.550e-39 Identity = 82/139 (58.99%), Postives = 98/139 (70.50%), Query Frame = -3
Query: 96 DDLLPATVLSVALSALHQVQQRS---RTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELKV 503
DD L ATVLSVAL+ALHQ+Q RT R+++ W+ L FD+ + ED E GP KR RRV +RRDW TSAWW QLQ+ DL DHTT AA VFR RFRVP+ FF LVK++R KRWF GEKD R+GIP+ELK+
Sbjct: 5 DDQLEATVLSVALAALHQIQGEDGCRRTARSVSYWDAVL--FDE--DSEDEEEVVGPKAKRTRRVTQRRDWRTSAWWEQLQHVDLADHTTAAATVFRGRFRVPYPFFQNLVKLSRAKRWFSPGEKDTANREGIPLELKL 139
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5JV87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV87_9PHAE) HSP 1 Score: 107 bits (268), Expect = 7.820e-27 Identity = 63/110 (57.27%), Postives = 76/110 (69.09%), Query Frame = -3
Query: 192 GFDDLLPATVL-SVALSALHQVQQRS---RTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFF 509
G DLL ATVL SVAL+ALHQ+Q+ RT R+++ W+ FD+ + ED E GP VKR +RV +RRDW TSAWW QLQ+ DL DH T AAKVFR RFRVP+ FF
Sbjct: 2 GTGDLLEATVLLSVALAALHQIQEEDGCRRTARSVSYWDAV--PFDE--DSEDEEEVVGPKVKRTQRVTQRRDWRTSAWWEQLQDVDLADHATAAAKVFRGRFRVPYPFF 107
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5KLA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA0_9PHAE) HSP 1 Score: 105 bits (262), Expect = 2.800e-26 Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = -3
Query: 99 LQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELK 275
+QN DLLDHTT+ AKVF TRFRVPHAFFLELVKMARGK+WF EKDAVGRQGIPIELK
Sbjct: 1 MQNADLLDHTTEEAKVFHTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRQGIPIELK 59
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5K5L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L5_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.150e-22 Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = -3
Query: 219 MASGFDDLLPATVLSVALSALHQVQQRS----RTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRT 518
M +G D L VLSVAL+ALHQ+Q+ RT R+++ W+ L FD+ + ED E GP VKR RRV ERRDW TSAWW QLQ+ DL DHTT AA V RT
Sbjct: 1 MGTGDDQLEATAVLSVALAALHQIQEEEDGCRRTARSVSHWDAVL--FDE--DSEDEEEVVGPKVKRTRRVTERRDWRTSAWWEQLQDVDLADHTTAAASVSRT 100
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5K8F8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F8_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 9.540e-16 Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = -3
Query: 270 DDLLPATVLSVALSALHQVQQ---RSRTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQ 503
DDLL ATVLS AL+ALHQ+Q+ R RT R+++ W+ L FD+ + ED E GP VKR RRV +RRDW TSAWW Q Q
Sbjct: 5 DDLLEATVLSFALAALHQIQEEDGRRRTARSVSYWDAVL--FDE--DSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEQQQ 81 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1334.2018.1 >prot_E-siliculosus-1a_F_contig1334.2018.1 ID=prot_E-siliculosus-1a_F_contig1334.2018.1|Name=mRNA_E-siliculosus-1a_F_contig1334.2018.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=145bp MATAAAELTNCVGMIRVCVNDRKELTFSSIGIPWRPTASFSPPQNHLFPLback to top mRNA from alignment at E-siliculosus-1a_F_contig1334:3225..3840+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1334.2018.1 ID=mRNA_E-siliculosus-1a_F_contig1334.2018.1|Name=mRNA_E-siliculosus-1a_F_contig1334.2018.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=616bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1334:3225..3840+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1334:3225..3840+ >mRNA_E-siliculosus-1a_F_contig1334.2018.1 ID=mRNA_E-siliculosus-1a_F_contig1334.2018.1|Name=mRNA_E-siliculosus-1a_F_contig1334.2018.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=870bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1334:3225..3840+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |