mRNA_E-siliculosus-1a_F_contig1334.2018.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1334.2018.1
Unique NamemRNA_E-siliculosus-1a_F_contig1334.2018.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 2.150e-83
Identity = 129/146 (88.36%), Postives = 138/146 (94.52%), Query Frame = -3
Query:   81 MASGFDDLLPATVLSVALSALHQVQQRSRTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELKVSSFLS 518
            MASGFDDLLP+TVLSVALSALHQVQQRSRT RT+AQW VALRAFDDAFEWED+GEQDGPPVKR R+VKERRDWSTSAWWLQLQN DLLDHTT+AAKVFRTRFRVPHAFFLELVKMARGK+WF   EKDAVGR+GIPIELK+SS+ S
Sbjct:    1 MASGFDDLLPSTVLSVALSALHQVQQRSRTHRTLAQWAVALRAFDDAFEWEDSGEQDGPPVKRSRQVKERRDWSTSAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSYRS 146          
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5J9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W9_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 1.510e-77
Identity = 124/140 (88.57%), Postives = 131/140 (93.57%), Query Frame = -3
Query:   99 MASGFDDLLPATVLSVALSALHQVQQRSRTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELK 518
            MASGFDDLLPATVLSVALSALHQVQ+RSRT RTMAQWEVALRAFDDAFEWED+GEQDGPPVKR R+VKER+DWSTSAWWLQLQ+  LLDH TDAAK FRTRFRVPHAFFLELVK+ARGKRWF  GE+DA GRQGIPIELK
Sbjct:    1 MASGFDDLLPATVLSVALSALHQVQKRSRTHRTMAQWEVALRAFDDAFEWEDSGEQDGPPVKRSRQVKERKDWSTSAWWLQLQDAALLDHATDAAKAFRTRFRVPHAFFLELVKLARGKRWFSRGEQDAAGRQGIPIELK 140          
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 3.330e-77
Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = -3
Query:   99 GFDDLLPATVLSVALSALHQVQQRSRTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELK 509
            GFDDLLP+TVLSVALSALHQVQQRSRT RT+AQW VALRAFDDAFEWED+GEQDGPPVKR R+VKERR+WSTSAWWLQLQN DLLDHTT+ AKVF TRFRVPHAFFLELVKMARGK+WF   EKDAVGRQGIPIELK
Sbjct:  196 GFDDLLPSTVLSVALSALHQVQQRSRTHRTLAQWAVALRAFDDAFEWEDSGEQDGPPVKRSRQVKERRNWSTSAWWLQLQNADLLDHTTEEAKVFHTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRQGIPIELK 332          
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5K4P1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4P1_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 9.310e-59
Identity = 103/140 (73.57%), Postives = 109/140 (77.86%), Query Frame = -3
Query:   99 MASGFDDLLPATVLSVALSALHQVQQRSRTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELK 518
            MASGFDDLLP+TVLSVALSALHQVQQRSRT RT+AQW VALRAFDDAFEWED+GEQD PPVKR R+      W+T                  AAKVFRTRFRVPHAFFLELVKMARGK+WF   EKDAVGRQGIPIELK
Sbjct:    1 MASGFDDLLPSTVLSVALSALHQVQQRSRTHRTLAQWAVALRAFDDAFEWEDSGEQDCPPVKRSRQTC----WTTPQ---------------KAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRQGIPIELK 121          
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 8.570e-45
Identity = 86/139 (61.87%), Postives = 103/139 (74.10%), Query Frame = -3
Query:   96 DDLLPATVLSVALSALHQVQQ---RSRTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELKV 503
            DDL  A VLSVAL+ALHQ+Q+   R RT R+++ W+  L  FD+  + ED  E  GP VKR RRV +RRDW TSAWW +LQ+ DL DHTT AAKVFR RFRVP+ FF ELVK++R KRWF  GEKDA  R+GIP+ELKV
Sbjct:    5 DDLFEAAVLSVALAALHQIQEEDGRRRTARSVSYWDAVL--FDE--DSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKV 139          
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.550e-39
Identity = 82/139 (58.99%), Postives = 98/139 (70.50%), Query Frame = -3
Query:   96 DDLLPATVLSVALSALHQVQQRS---RTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELKV 503
            DD L ATVLSVAL+ALHQ+Q      RT R+++ W+  L  FD+  + ED  E  GP  KR RRV +RRDW TSAWW QLQ+ DL DHTT AA VFR RFRVP+ FF  LVK++R KRWF  GEKD   R+GIP+ELK+
Sbjct:    5 DDQLEATVLSVALAALHQIQGEDGCRRTARSVSYWDAVL--FDE--DSEDEEEVVGPKAKRTRRVTQRRDWRTSAWWEQLQHVDLADHTTAAATVFRGRFRVPYPFFQNLVKLSRAKRWFSPGEKDTANREGIPLELKL 139          
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5JV87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV87_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 7.820e-27
Identity = 63/110 (57.27%), Postives = 76/110 (69.09%), Query Frame = -3
Query:  192 GFDDLLPATVL-SVALSALHQVQQRS---RTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRTRFRVPHAFF 509
            G  DLL ATVL SVAL+ALHQ+Q+     RT R+++ W+     FD+  + ED  E  GP VKR +RV +RRDW TSAWW QLQ+ DL DH T AAKVFR RFRVP+ FF
Sbjct:    2 GTGDLLEATVLLSVALAALHQIQEEDGCRRTARSVSYWDAV--PFDE--DSEDEEEVVGPKVKRTQRVTQRRDWRTSAWWEQLQDVDLADHATAAAKVFRGRFRVPYPFF 107          
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5KLA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA0_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.800e-26
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = -3
Query:   99 LQNTDLLDHTTDAAKVFRTRFRVPHAFFLELVKMARGKRWFCGGEKDAVGRQGIPIELK 275
            +QN DLLDHTT+ AKVF TRFRVPHAFFLELVKMARGK+WF   EKDAVGRQGIPIELK
Sbjct:    1 MQNADLLDHTTEEAKVFHTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRQGIPIELK 59          
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5K5L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.150e-22
Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = -3
Query:  219 MASGFDDLLPATVLSVALSALHQVQQRS----RTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQNTDLLDHTTDAAKVFRT 518
            M +G D L    VLSVAL+ALHQ+Q+      RT R+++ W+  L  FD+  + ED  E  GP VKR RRV ERRDW TSAWW QLQ+ DL DHTT AA V RT
Sbjct:    1 MGTGDDQLEATAVLSVALAALHQIQEEEDGCRRTARSVSHWDAVL--FDE--DSEDEEEVVGPKVKRTRRVTERRDWRTSAWWEQLQDVDLADHTTAAASVSRT 100          
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Match: A0A6H5K8F8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 9.540e-16
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  270 DDLLPATVLSVALSALHQVQQ---RSRTQRTMAQWEVALRAFDDAFEWEDNGEQDGPPVKRPRRVKERRDWSTSAWWLQLQ 503
            DDLL ATVLS AL+ALHQ+Q+   R RT R+++ W+  L  FD+  + ED  E  GP VKR RRV +RRDW TSAWW Q Q
Sbjct:    5 DDLLEATVLSFALAALHQIQEEDGRRRTARSVSYWDAVL--FDE--DSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEQQQ 81          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1334.2018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JCU6_9PHAE2.150e-8388.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9W9_9PHAE1.510e-7788.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C1_9PHAE3.330e-7788.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4P1_9PHAE9.310e-5973.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE8.570e-4561.87DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KEB6_9PHAE1.550e-3958.99DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JV87_9PHAE7.820e-2757.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLA0_9PHAE2.800e-2684.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5L5_9PHAE1.150e-2254.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8F8_9PHAE9.540e-1656.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1334contigE-siliculosus-1a_F_contig1334:3225..3840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size435
Model size616
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1334.2018.1prot_E-siliculosus-1a_F_contig1334.2018.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1334 3246..3680 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927853.5332932-UTR-E-siliculosus-1a_F_contig1334:3224..32451622927853.5332932-UTR-E-siliculosus-1a_F_contig1334:3224..3245Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1334 3225..3245 +
1696318709.0043356-UTR-E-siliculosus-1a_F_contig1334:3224..32451696318709.0043356-UTR-E-siliculosus-1a_F_contig1334:3224..3245Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1334 3225..3245 +
1622927853.5636663-UTR-E-siliculosus-1a_F_contig1334:3680..38401622927853.5636663-UTR-E-siliculosus-1a_F_contig1334:3680..3840Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1334 3681..3840 +
1696318709.0212035-UTR-E-siliculosus-1a_F_contig1334:3680..38401696318709.0212035-UTR-E-siliculosus-1a_F_contig1334:3680..3840Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1334 3681..3840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927853.550537-CDS-E-siliculosus-1a_F_contig1334:3245..36801622927853.550537-CDS-E-siliculosus-1a_F_contig1334:3245..3680Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1334 3246..3680 +
1696318709.0128536-CDS-E-siliculosus-1a_F_contig1334:3245..36801696318709.0128536-CDS-E-siliculosus-1a_F_contig1334:3245..3680Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1334 3246..3680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1334.2018.1

>prot_E-siliculosus-1a_F_contig1334.2018.1 ID=prot_E-siliculosus-1a_F_contig1334.2018.1|Name=mRNA_E-siliculosus-1a_F_contig1334.2018.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=145bp
MATAAAELTNCVGMIRVCVNDRKELTFSSIGIPWRPTASFSPPQNHLFPL
AIFTSSRKKACGTRKRVRKTLAASVVWSNRSVFWSCSHHAEVLQSLRSFT
RLGRFTGGPSCSPLSSHSKASSNARSATSHWAIVRCVRLRCWTW*
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mRNA from alignment at E-siliculosus-1a_F_contig1334:3225..3840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1334.2018.1 ID=mRNA_E-siliculosus-1a_F_contig1334.2018.1|Name=mRNA_E-siliculosus-1a_F_contig1334.2018.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=616bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1334:3225..3840+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTATAGAGACATGGAGAGGACATGGCTACAGCAGCAGCAGAACTAACGAA CTGTGTAGGCATGATCCGTGTGTGTGTGAACGACAGAAAGGAGCTCACCT TCAGTTCAATTGGTATCCCCTGGCGCCCAACAGCATCCTTCTCTCCCCCA CAGAACCACCTCTTTCCCCTCGCCATCTTCACCAGTTCCAGAAAGAAGGC GTGCGGTACCCGGAAGCGAGTGCGGAAGACCTTGGCCGCGTCTGTGGTGT GGTCCAACAGGTCTGTGTTTTGGAGCTGTAGCCACCACGCAGAGGTACTC CAATCTCTTCGCTCCTTTACTCGCCTCGGACGCTTCACGGGCGGACCATC CTGCTCACCGTTGTCCTCCCACTCAAAGGCGTCGTCGAACGCGCGCAGTG CGACCTCCCACTGGGCCATCGTGCGCTGCGTGCGGCTTCGCTGCTGGACT TGGTGAAGCGCCGAGAGGGCCACCGAGAGCACGGTGGCAGGCAGCAGGTC ATCAAAACCCGAAGCCATCGATGGCATCGTCCAGTCGGGTGGAGCTTGCT GAAGAGGGCATACGCTAGTAGATGCTGAGAGAGCCCAACAGGAGAGGGTG CAGCCCAAGGGTAGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1334:3225..3840+

>mRNA_E-siliculosus-1a_F_contig1334.2018.1 ID=mRNA_E-siliculosus-1a_F_contig1334.2018.1|Name=mRNA_E-siliculosus-1a_F_contig1334.2018.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=870bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1334:3225..3840+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTACAGCAGCAGCAGAACTAACGAACTGTGTAGGCATGATCCGTGT
GTGTGTGAACGACAGAAAGGAGCTCACCTTCAGTTCAATTGGTATCCCCT
GGCGCCCAACAGCATCCTTCTCTCCCCCACAGAACCACCTCTTTCCCCTC
GCCATCTTCACCAGTTCCAGAAAGAAGGCGTGCGGTACCCGGAAGCGAGT
GCGGAAGACCTTGGCCGCGTCTGTGGTGTGGTCCAACAGGTCTGTGTTTT
GGAGCTGTAGCCACCACGCAGAGGTACTCCAATCTCTTCGCTCCTTTACT
CGCCTCGGACGCTTCACGGGCGGACCATCCTGCTCACCGTTGTCCTCCCA
CTCAAAGGCGTCGTCGAACGCGCGCAGTGCGACCTCCCACTGGGCCATCG
TGCGCTGCGTGCGGCTTCGCTGCTGGACTTGGTGAATGGCTACAGCAGCA
GCAGAACTAACGAACTGTGTAGGCATGATCCGTGTGTGTGTGAACGACAG
AAAGGAGCTCACCTTCAGTTCAATTGGTATCCCCTGGCGCCCAACAGCAT
CCTTCTCTCCCCCACAGAACCACCTCTTTCCCCTCGCCATCTTCACCAGT
TCCAGAAAGAAGGCGTGCGGTACCCGGAAGCGAGTGCGGAAGACCTTGGC
CGCGTCTGTGGTGTGGTCCAACAGGTCTGTGTTTTGGAGCTGTAGCCACC
ACGCAGAGGTACTCCAATCTCTTCGCTCCTTTACTCGCCTCGGACGCTTC
ACGGGCGGACCATCCTGCTCACCGTTGTCCTCCCACTCAAAGGCGTCGTC
GAACGCGCGCAGTGCGACCTCCCACTGGGCCATCGTGCGCTGCGTGCGGC
TTCGCTGCTGGACTTGGTGA
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