mRNA_E-siliculosus-1a_F_contig1333.2015.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1333.2015.1
Unique NamemRNA_E-siliculosus-1a_F_contig1333.2015.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1333.2015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1333contigE-siliculosus-1a_F_contig1333:3729..4893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size234
Model size234
Exons3
Ec32 orthologEc-23_004250.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1333.2015.1prot_E-siliculosus-1a_F_contig1333.2015.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1333 3729..4893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927853.3919482-CDS-E-siliculosus-1a_F_contig1333:3728..38381622927853.3919482-CDS-E-siliculosus-1a_F_contig1333:3728..3838Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1333 3729..3838 +
1696318708.9486995-CDS-E-siliculosus-1a_F_contig1333:3728..38381696318708.9486995-CDS-E-siliculosus-1a_F_contig1333:3728..3838Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1333 3729..3838 +
1622927853.406217-CDS-E-siliculosus-1a_F_contig1333:4599..46691622927853.406217-CDS-E-siliculosus-1a_F_contig1333:4599..4669Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1333 4600..4669 +
1696318708.9598053-CDS-E-siliculosus-1a_F_contig1333:4599..46691696318708.9598053-CDS-E-siliculosus-1a_F_contig1333:4599..4669Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1333 4600..4669 +
1622927853.4170914-CDS-E-siliculosus-1a_F_contig1333:4839..48931622927853.4170914-CDS-E-siliculosus-1a_F_contig1333:4839..4893Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1333 4840..4893 +
1696318708.9696858-CDS-E-siliculosus-1a_F_contig1333:4839..48931696318708.9696858-CDS-E-siliculosus-1a_F_contig1333:4839..4893Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1333 4840..4893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1333.2015.1

>prot_E-siliculosus-1a_F_contig1333.2015.1 ID=prot_E-siliculosus-1a_F_contig1333.2015.1|Name=mRNA_E-siliculosus-1a_F_contig1333.2015.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=78bp
CAPHACSAAQQCDNNDTQHTWGVLILLPRDPPQATTTINNVGQGQYEPVP
LSSRRQSYQTHRCSEPTRIGNHQYYLG*
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mRNA from alignment at E-siliculosus-1a_F_contig1333:3729..4893+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1333.2015.1 ID=mRNA_E-siliculosus-1a_F_contig1333.2015.1|Name=mRNA_E-siliculosus-1a_F_contig1333.2015.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1165bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1333:3729..4893+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTGCACCACACGCATGCAGTGCTGCGCAGCAGTGCGACAATAACGACAC
CCAGCACACGTGGGGTGTTCTTATTCTTCTTCCACGTGACCCACCACAAG
CCACAACTACGTGGCGCAACAGGATATGAGAAATTTGAGACAGCTCCGCT
TCCAACTAGGCGACCGCCACATCAAAACGTTCGAAGGATGCAACGGGGTT
GACATTGTCTACAGAACTCTTCACGCCGAGAAAGCCTGGTAAACAATTGA
GATCACAGTGATACGGACCACTTTACAGTGCTGAAGCTGGTTATATGTTC
TTCGACGTACAACAAGCTTATGTGGAGCGAGCCAACGCGATTTGGCAACC
ATCAATCTTACCTGGGGTCGGAGTAGGTTCTGGTCGTGTCACGAACACCC
AGAGTAGCATCGACGATAGCACCGAGGGTGACATCGAGAGGGTAGCACCG
AGGGGGTCCGTGGGGAATGAACGCGGCGTCGAGTAAGTTCGGGCGGATAT
CAATTTGGAAATTACGTGTCTATGTCGTTGATAAATATCCCGGACATCGT
AATGAGGCGTTAATCCATCGACTTGCTAAGAATCTTGTCGCACCCACCTT
GGTACCAGACGGGCAGATGGTGAGTATTTGGGGGTAGAATAGGTAGTAGG
GCCAACGCGAAACCGCGCGAAAAGTATCCATATACAGTTCTGTTAACAGG
CCGCAGTTCGTTTTCGGGTGTGCGATGCAACTCATTAAGCACCGGGAGTT
TGCGGAATGCAGGAGCTACAGATGTGCACCATATGCACGCCGTGATACGA
AGCAGTGCGACCACGCGACCCCGGGAACGCGTGGGCTGTTCTTGGTCTCC
TTCTCCACGTCCCACTACCAGCATCAACAACGTGGGACAAGGGCAATATG
AGCCGGTTCCGCTCTCAAGCAGGCGGCAGTCATATCAAACCGTTGGTTGA
AAGGCAGCAACGGGGTTTTGACATTTCGTACAGAATGCTGATCGTCAAAC
AACAGTGCAACATTTCACGCGGAGACAAATATGGCAAACAATTTCGATCA
CGGTAATCCGGACCAATTTTCAACACCGAAGCTGATCGTCTGTTTTCCGA
CGTACACCAAGCATAGGTGCAGCGAGCCAACGCGAATTGGCAACCATCAA
TATTACCTGGGGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1333:3729..4893+

>mRNA_E-siliculosus-1a_F_contig1333.2015.1 ID=mRNA_E-siliculosus-1a_F_contig1333.2015.1|Name=mRNA_E-siliculosus-1a_F_contig1333.2015.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1333:3729..4893+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTGCACCACACGCATGCAGTGCTGCGCAGCAGTGCGACAATAACGACAC
CCAGCACACGTGGGGTGTTCTTATTCTTCTTCCACGTGACCCACCACAAG
CCACAACTACTGTGCACCACACGCATGCAGTGCTGCGCAGCAGTGCGACA
ATAACGACACCCAGCACACGTGGGGTGTTCTTATTCTTCTTCCACGTGAC
CCACCACAAGCCACAACTACCATCAACAACGTGGGACAAGGGCAATATGA
GCCGGTTCCGCTCTCAAGCAGGCGGCAGTCATATCAAACCCATCAACAAC
GTGGGACAAGGGCAATATGAGCCGGTTCCGCTCTCAAGCAGGCGGCAGTC
ATATCAAACCCATAGGTGCAGCGAGCCAACGCGAATTGGCAACCATCAAT
ATTACCTGGGGTAGCATAGGTGCAGCGAGCCAACGCGAATTGGCAACCAT
CAATATTACCTGGGGTAG
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