mRNA_E-siliculosus-1a_F_contig13329.2014.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13329.2014.1
Unique NamemRNA_E-siliculosus-1a_F_contig13329.2014.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13329.2014.1 vs. uniprot
Match: D8LJG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG9_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 5.220e-44
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 MERRAQTAKADGRPAQFTYNSMDAAAQVKFSVPALSVMTHGTDRGWPERQKIYAVLTEGHSVSVSFVPQILGT 219
            MERRAQTAKADGRPAQFTYNSMDAAAQVKFSVPALSVMTHGTDRGWPERQKIYAVLTEGHSVSVSFVPQILGT
Sbjct:    1 MERRAQTAKADGRPAQFTYNSMDAAAQVKFSVPALSVMTHGTDRGWPERQKIYAVLTEGHSVSVSFVPQILGT 73
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13329.2014.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.530e-11
Identity = 36/68 (52.94%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   13 AQTAKADGRPAQFTYNSMDAAAQVKFSVPALSVMTHGTDRGWPERQKIYAVLTEGHSVSVSFVPQILG 216
            A  AKADG+P  F + S+DAA     ++PA+   THG DRG+ ERQKI AV  EG  V V F PQ LG
Sbjct:  117 AMRAKADGKPLNFVFMSIDAANSTSHALPAIYPPTHGGDRGYSERQKIMAVHIEGQFVEVYFTPQYLG 184
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13329.2014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJG9_ECTSI5.220e-44100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUU1_9PHAE1.530e-1152.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13329contigE-siliculosus-1a_F_contig13329:528..1052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size219
Model size219
Exons2
Ec32 orthologEc-00_003780.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927853.336632-CDS-E-siliculosus-1a_F_contig13329:527..6151622927853.336632-CDS-E-siliculosus-1a_F_contig13329:527..615Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13329 528..615 -
1696318708.9242067-CDS-E-siliculosus-1a_F_contig13329:527..6151696318708.9242067-CDS-E-siliculosus-1a_F_contig13329:527..615Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13329 528..615 -
1622927853.3514826-CDS-E-siliculosus-1a_F_contig13329:921..10521622927853.3514826-CDS-E-siliculosus-1a_F_contig13329:921..1052Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13329 922..1052 -
1696318708.933378-CDS-E-siliculosus-1a_F_contig13329:921..10521696318708.933378-CDS-E-siliculosus-1a_F_contig13329:921..1052Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13329 922..1052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13329.2014.1prot_E-siliculosus-1a_F_contig13329.2014.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13329 528..1052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13329.2014.1

>prot_E-siliculosus-1a_F_contig13329.2014.1 ID=prot_E-siliculosus-1a_F_contig13329.2014.1|Name=mRNA_E-siliculosus-1a_F_contig13329.2014.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=73bp
MERRAQTAKADGRPAQFTYNSMDAAAQVKFSVPALSVMTHGTDRGWPERQ
KIYAVLTEGHSVSVSFVPQILGT
back to top

mRNA from alignment at E-siliculosus-1a_F_contig13329:528..1052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13329.2014.1 ID=mRNA_E-siliculosus-1a_F_contig13329.2014.1|Name=mRNA_E-siliculosus-1a_F_contig13329.2014.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=525bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13329:528..1052- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAGAGACGCGCGCAGACAGCAAAAGCTGACGGCAGACCCGCTCAGTT
TACGTACAACAGCATGGATGCCGCCGCTCAGGTCAAGTTTTCTGTCCCTG
CCTTGTCCGTCATGACCCATGGGACCGACAGGTGAGTGAAAAGAACTGGG
CCGCTGCGCGACGTATACGTTGTAGCAGCGTTCGTTCCGCACCAACGAGA
AGAAGGCGTAAAATAGTTTGAGACGTCGGGGCGAGAAATGGACGAACAAA
GAGCCCGTCGGTCAGCACTCTTCAGTCGGCGGGCTCGACCACGGAAAATA
TTGGTCCGGCTTTCTTTGTCGTTCACCGCCTTTTTTGATTGAGCGGCATA
CACATTTCCAAACTCCTCCTTAGTCACGGCTAACCTATTGCGCCATATGG
GCACCCCTCGTGCGCGCTGTTTCTGTCGTTTGTACAGAGGCTGGCCCGAG
AGACAAAAAATTTACGCTGTCCTGACGGAGGGGCACTCTGTTAGTGTGTC
GTTCGTTCCTCAGATCCTGGGCACA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13329:528..1052-

>mRNA_E-siliculosus-1a_F_contig13329.2014.1 ID=mRNA_E-siliculosus-1a_F_contig13329.2014.1|Name=mRNA_E-siliculosus-1a_F_contig13329.2014.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13329:528..1052- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAGAGACGCGCGCAGACAGCAAAAGCTGACGGCAGACCCGCTCAGTT
TACGTACAACAGCATGGATGCCGCCGCTCAGGTCAAGTTTTCTGTCCCTG
CCTTGTCCGTCATGACCCATGGGACCGACAGATGGAGAGACGCGCGCAGA
CAGCAAAAGCTGACGGCAGACCCGCTCAGTTTACGTACAACAGCATGGAT
GCCGCCGCTCAGGTCAAGTTTTCTGTCCCTGCCTTGTCCGTCATGACCCA
TGGGACCGACAGAGGCTGGCCCGAGAGACAAAAAATTTACGCTGTCCTGA
CGGAGGGGCACTCTGTTAGTGTGTCGTTCGTTCCTCAGATCCTGGGCACA
AGGCTGGCCCGAGAGACAAAAAATTTACGCTGTCCTGACGGAGGGGCACT
CTGTTAGTGTGTCGTTCGTTCCTCAGATCCTGGGCACA
back to top