mRNA_E-siliculosus-1a_F_contig13324.2013.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13324.2013.1
Unique NamemRNA_E-siliculosus-1a_F_contig13324.2013.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A0F9V308_9ZZZZ (S4 domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9V308_9ZZZZ)

HSP 1 Score: 425 bits (1093), Expect = 2.680e-149
Identity = 218/248 (87.90%), Postives = 228/248 (91.94%), Query Frame = 1
Query:    1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHALTR 744
            LDQLLVSQGLANSRTRAQRLIRHGRVRLANSG  LTK SEKWPE TRF VEDDPEERYVSRAGLKLEAVL TLELRFDDC+VLDIGQSTGGFTDCALRFGA+HVVG+EVGHGQLAAELRGNP VTCLEG+NAR MS S ALKSVLA+ PI++AVMDVSFISQTLILPEIAALLP GGQLISLVKPQFELNPGALDKRGVVRD  LFADVEASIR AC+  G  I HWQESPITGGDGNREFLLHA+T+
Sbjct:    4 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGNLLTKASEKWPENTRFRVEDDPEERYVSRAGLKLEAVLKTLELRFDDCVVLDIGQSTGGFTDCALRFGAQHVVGIEVGHGQLAAELRGNPHVTCLEGINARDMSSSEALKSVLAITPINIAVMDVSFISQTLILPEIAALLPSGGQLISLVKPQFELNPGALDKRGVVRDATLFADVEASIRRACDECGLIIQHWQESPITGGDGNREFLLHAITK 251          
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A101D3G6_9GAMM (Hemolysin A n=1 Tax=Halomonas sp. 54_146 TaxID=1635257 RepID=A0A101D3G6_9GAMM)

HSP 1 Score: 414 bits (1063), Expect = 9.960e-145
Identity = 209/249 (83.94%), Postives = 228/249 (91.57%), Query Frame = 1
Query:    1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHALTRS 747
            LDQLLVSQGLANSRTRAQRLIRHGRVRLA +GKPLTK SEKWPE TRF VEDDPEERYVSRAGLKLEAVLT L LRFDD +VLD+GQSTGGFTDCALRFGARHV+GVEVGHGQLA EL+ +P VTCLEG+NAR M  + AL+SVLAV+PI++A+MDVSFISQTLILPEIAALLPPGGQLISLVKPQFEL PGALDKRGVVRD K FADVEASIR AC++ G +IHHWQESPITGGDGNREFLLHA+ ++
Sbjct:    4 LDQLLVSQGLANSRTRAQRLIRHGRVRLAENGKPLTKASEKWPEDTRFEVEDDPEERYVSRAGLKLEAVLTALALRFDDSVVLDVGQSTGGFTDCALRFGARHVIGVEVGHGQLAPELQNDPRVTCLEGLNARYMRSAEALQSVLAVQPINIAIMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELTPGALDKRGVVRDAKRFADVEASIRSACDHCGLTIHHWQESPITGGDGNREFLLHAVKQA 252          
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A0D6E6W7_9GAMM (Hemolysin A n=6 Tax=Halomonas TaxID=2745 RepID=A0A0D6E6W7_9GAMM)

HSP 1 Score: 407 bits (1047), Expect = 2.730e-142
Identity = 208/246 (84.55%), Postives = 222/246 (90.24%), Query Frame = 1
Query:    1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHAL 738
            LDQLLVSQGLANSRTRAQRLIRHGR+RLA+SGKPL K SEKWPE TRF VEDDPEERYVSRAGLKLEAVLT LELRFD C VLDIGQSTGGFTDCALRFGARHV+GVEVGHGQLA ELRG+P VTCLEG+NAR+MS S AL SVL+V+PID A+MDVSFISQTLILPEIAALLPP GQLISLVKPQFEL PGALDKRGVVRD K FA+VE +IR  C+  G +I HWQESPITGGDGNREFLLHA+
Sbjct:    4 LDQLLVSQGLANSRTRAQRLIRHGRIRLADSGKPLIKASEKWPEETRFEVEDDPEERYVSRAGLKLEAVLTALELRFDGCSVLDIGQSTGGFTDCALRFGARHVIGVEVGHGQLAPELRGDPRVTCLEGLNARSMSSSEALSSVLSVQPIDSAIMDVSFISQTLILPEIAALLPPEGQLISLVKPQFELTPGALDKRGVVRDAKRFAEVETNIRSTCDACGLTIRHWQESPITGGDGNREFLLHAV 249          
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A6I7MUK4_HALSX (TlyA family RNA methyltransferase n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A6I7MUK4_HALSX)

HSP 1 Score: 399 bits (1025), Expect = 6.340e-139
Identity = 205/246 (83.33%), Postives = 222/246 (90.24%), Query Frame = 1
Query:    1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHAL 738
            LDQLLVSQGL +SRTRAQRLIRHG+VRLA+SGK LTK SEKWPE T F VE+DPEERYVSRAGLKLEAVL TL LR D C VLDIGQSTGGFTDCALRFGARHV+GVEVGHGQLA+ELRG+P VTCLEG+NAR+MS + +LK+VLA +PIDVAVMDVSFISQTLILPEIA LLP GGQLISLVKPQFEL+PGALDKRGVVRD K FA+VEASIR AC  +G SI HWQESPITGGDGNREFLLHA+
Sbjct:    4 LDQLLVSQGLTSSRTRAQRLIRHGKVRLADSGKTLTKASEKWPEGTLFSVEEDPEERYVSRAGLKLEAVLKTLTLRLDGCTVLDIGQSTGGFTDCALRFGARHVIGVEVGHGQLASELRGDPRVTCLEGLNARSMSSAESLKNVLAAQPIDVAVMDVSFISQTLILPEIATLLPQGGQLISLVKPQFELSPGALDKRGVVRDAKRFAEVEASIRRACHESGLSIQHWQESPITGGDGNREFLLHAV 249          
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A2A3XD47_9GAMM (TlyA family rRNA (Cytidine-2'-O)-methyltransferase n=1 Tax=Halomonas sp. JB37 TaxID=2024405 RepID=A0A2A3XD47_9GAMM)

HSP 1 Score: 398 bits (1023), Expect = 1.230e-138
Identity = 205/249 (82.33%), Postives = 220/249 (88.35%), Query Frame = 1
Query:    1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHALTRS 747
            LDQLLVS GLANSRTRAQRLIRHGRV LANSG+ LTKVSEKWP+TTRFIVEDDPEERYVSRAGLKLE VLT L LRFD C+VLDIGQSTGGFTDCALRFGARHV+GVEVGHGQLA +LR +P VTCLEG+NAR MS +  L  VLA +PI VA+MDVSFISQTLILPE+AALLPP GQLISLVKPQFEL+PGALDKRGVVRD  LFADVEASIR AC + G +I HWQESPITG DGNREFLLHA T +
Sbjct:    4 LDQLLVSLGLANSRTRAQRLIRHGRVSLANSGRVLTKVSEKWPDTTRFIVEDDPEERYVSRAGLKLEGVLTALGLRFDGCVVLDIGQSTGGFTDCALRFGARHVIGVEVGHGQLAEQLRTDPRVTCLEGLNARHMSSATPLIHVLADQPIHVAIMDVSFISQTLILPEVAALLPPDGQLISLVKPQFELSPGALDKRGVVRDATLFADVEASIRSACHDCGLTIRHWQESPITGSDGNREFLLHAATEA 252          
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A0D5M178_9GAMM (Hemolysin A n=5 Tax=Halomonas TaxID=2745 RepID=A0A0D5M178_9GAMM)

HSP 1 Score: 397 bits (1020), Expect = 4.220e-138
Identity = 203/250 (81.20%), Postives = 220/250 (88.00%), Query Frame = 1
Query:    1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHALTRSK 750
            LDQLLVSQGLANSRTRAQRLIRHGR+RLA++GKPLTK SEKWPE TRF VEDDPEERYVSRAGLKLEAVLTTLE+R D+ +VLDIGQSTGGFTDCALRFGARHV+GVEVGHGQLA ELRG+P VTCLEG+NAR MS   ALKSVLA +PI  A+MDVSFISQTLILPEIAALLPP G LISLVKPQFELN  ALDKRGVVRD + + DVE +IR AC+  G +I HWQESPITGGDGNREFLLHA+   K
Sbjct:    5 LDQLLVSQGLANSRTRAQRLIRHGRIRLASNGKPLTKASEKWPEDTRFDVEDDPEERYVSRAGLKLEAVLTTLEMRLDETVVLDIGQSTGGFTDCALRFGARHVIGVEVGHGQLAPELRGDPRVTCLEGLNARYMSSDEALKSVLAAQPIHSAIMDVSFISQTLILPEIAALLPPEGHLISLVKPQFELNAEALDKRGVVRDARRYNDVETNIRSACDACGLAIRHWQESPITGGDGNREFLLHAIKERK 254          
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A4R7YAT9_9GAMM (23S rRNA (Cytidine1920-2'-O)/16S rRNA (Cytidine1409-2'-O)-methyltransferase n=1 Tax=Halomonas alkaliantarctica TaxID=232346 RepID=A0A4R7YAT9_9GAMM)

HSP 1 Score: 395 bits (1015), Expect = 2.040e-137
Identity = 203/246 (82.52%), Postives = 222/246 (90.24%), Query Frame = 1
Query:    1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHAL 738
            LDQLLVSQ LANSRTRAQRLIRHGRVRLA++GKPLTK SEKWPE TRF V+DDPEERYVSRAGLKLEAVLT LELRFD+ +VLDIGQSTGGF+DCALRFGARHV+GVEVGHGQLAAELRG+P VTCLEG+NAR+M+ S AL SVL+  PI+ A+MDVSFISQTLIL EIAALLPPGGQLISLVKPQFEL PGALDKRGVVRD K FA+VEA+IR +C     +I HWQESPITGGDGNREFLLHA+
Sbjct:    4 LDQLLVSQELANSRTRAQRLIRHGRVRLADNGKPLTKASEKWPEDTRFEVDDDPEERYVSRAGLKLEAVLTALELRFDNAVVLDIGQSTGGFSDCALRFGARHVIGVEVGHGQLAAELRGDPRVTCLEGLNARSMTSSEALTSVLSAHPINSAIMDVSFISQTLILHEIAALLPPGGQLISLVKPQFELTPGALDKRGVVRDAKHFAEVEANIRRSCNACELNIQHWQESPITGGDGNREFLLHAV 249          
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A365TIG8_9GAMM (TlyA family rRNA (Cytidine-2'-O)-methyltransferase n=1 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A365TIG8_9GAMM)

HSP 1 Score: 394 bits (1012), Expect = 5.840e-137
Identity = 201/246 (81.71%), Postives = 220/246 (89.43%), Query Frame = 1
Query:    1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHAL 738
            LDQLLVSQGL +SRTRAQRLIRHGRVRLA +GKPLTKVSEKWPE T F +EDD EERYVSRAGLKLEAVL  LELRFDDC+VLDIGQSTGGFTDCALRFGA HV+GVEVGHGQLAAELR +P VTCLEG+NAR+MS + AL S+L V+PID AVMDVSFISQTLI+PEIAALLP GGQLISLVKPQFEL PGALDKRG+VR+ K +A+VEA+IR AC     +IHHWQESPITGGDGNREFLLHA+
Sbjct:    4 LDQLLVSQGLTSSRTRAQRLIRHGRVRLAENGKPLTKVSEKWPEDTCFEMEDDAEERYVSRAGLKLEAVLIALELRFDDCVVLDIGQSTGGFTDCALRFGACHVIGVEVGHGQLAAELRNDPRVTCLEGLNARSMSSAKALNSLLTVQPIDSAVMDVSFISQTLIIPEIAALLPAGGQLISLVKPQFELTPGALDKRGIVRNAKHYAEVEANIRSACAACALAIHHWQESPITGGDGNREFLLHAV 249          
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A1A9R5R9_9GAMM (Hemolysin n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A1A9R5R9_9GAMM)

HSP 1 Score: 394 bits (1011), Expect = 8.290e-137
Identity = 201/246 (81.71%), Postives = 221/246 (89.84%), Query Frame = 1
Query:    1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHAL 738
            LDQLLVSQGLANSRTRAQRLIRHGR+ LA++GKPL K SEKWPE TRF VEDDPEERYVSRAGLKLEAVLTTLELRFD C+VLDIGQSTGGF+DCALRFGARHV+GVEVGHGQLA+ELR +P VTCLEG+NAR+MS S  L  VL+V+PID A+MDVSFISQTLILPEIAALLP GG+LISLVKPQFEL+P AL+KRGVVRDTK F+ VEA+IR AC   G +I HWQESPITG DGNREFLLHA+
Sbjct:    4 LDQLLVSQGLANSRTRAQRLIRHGRISLADNGKPLIKASEKWPEDTRFAVEDDPEERYVSRAGLKLEAVLTTLELRFDGCVVLDIGQSTGGFSDCALRFGARHVIGVEVGHGQLASELRDDPRVTCLEGLNARSMSSSEVLNRVLSVQPIDSAIMDVSFISQTLILPEIAALLPLGGELISLVKPQFELSPDALNKRGVVRDTKHFSAVEANIRSACGVCGLTIRHWQESPITGSDGNREFLLHAI 249          
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A265DTT6_9GAMM (TlyA family rRNA (Cytidine-2'-O)-methyltransferase n=10 Tax=Halomonas TaxID=2745 RepID=A0A265DTT6_9GAMM)

HSP 1 Score: 393 bits (1009), Expect = 1.670e-136
Identity = 201/246 (81.71%), Postives = 216/246 (87.80%), Query Frame = 1
Query:    1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHAL 738
            LDQLLVSQGLANSRTRAQRLIRHGR+RLA +GKPLTK SEKWP+ TRF VEDDPEERYVSRAGLKLEAVL  L+LRFDD +VLDIGQSTGGF+DCALRFGARHV+G+EVGHGQLA ELR +P VTCLEGVNAR+MS S  L SVL   PID A+MDVSFISQTLILPEIAALLP GGQLISLVKPQFEL PGALDKRGVVRD K F+ VEA+IR  C   G +I HWQESPITGGDGNREFLLHA+
Sbjct:    4 LDQLLVSQGLANSRTRAQRLIRHGRIRLAENGKPLTKASEKWPDDTRFEVEDDPEERYVSRAGLKLEAVLKALDLRFDDAVVLDIGQSTGGFSDCALRFGARHVIGIEVGHGQLAPELRCDPRVTCLEGVNARSMSSSQVLNSVLVTMPIDSAIMDVSFISQTLILPEIAALLPLGGQLISLVKPQFELTPGALDKRGVVRDAKHFSVVEANIRSTCNACGLTIRHWQESPITGGDGNREFLLHAV 249          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F9V308_9ZZZZ2.680e-14987.90S4 domain-containing protein n=1 Tax=marine sedime... [more]
A0A101D3G6_9GAMM9.960e-14583.94Hemolysin A n=1 Tax=Halomonas sp. 54_146 TaxID=163... [more]
A0A0D6E6W7_9GAMM2.730e-14284.55Hemolysin A n=6 Tax=Halomonas TaxID=2745 RepID=A0A... [more]
A0A6I7MUK4_HALSX6.340e-13983.33TlyA family RNA methyltransferase n=1 Tax=Halomona... [more]
A0A2A3XD47_9GAMM1.230e-13882.33TlyA family rRNA (Cytidine-2'-O)-methyltransferase... [more]
A0A0D5M178_9GAMM4.220e-13881.20Hemolysin A n=5 Tax=Halomonas TaxID=2745 RepID=A0A... [more]
A0A4R7YAT9_9GAMM2.040e-13782.5223S rRNA (Cytidine1920-2'-O)/16S rRNA (Cytidine140... [more]
A0A365TIG8_9GAMM5.840e-13781.71TlyA family rRNA (Cytidine-2'-O)-methyltransferase... [more]
A0A1A9R5R9_9GAMM8.290e-13781.71Hemolysin n=2 Tax=unclassified Halomonas TaxID=260... [more]
A0A265DTT6_9GAMM1.670e-13681.71TlyA family rRNA (Cytidine-2'-O)-methyltransferase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13324contigE-siliculosus-1a_F_contig13324:576..1328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size753
Model size753
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.J
EC2.1.1.226,2.1.1.227
EggNOG OGs1MWP5@1224,1S28A@1236,1XJ5M@135619,COG1189@1,COG1189@2
EggNOG free text desc.Hemolysin
KEGG koko:K06442
Preferred namerrmJ
Seed eggNOG ortholog1415755.JQLV01000002_gene99
Seed ortholog evalue5.2e-112
Seed ortholog score410.6
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927853.2823615-CDS-E-siliculosus-1a_F_contig13324:575..13281622927853.2823615-CDS-E-siliculosus-1a_F_contig13324:575..1328Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13324 576..1328 -
1696318708.9048228-CDS-E-siliculosus-1a_F_contig13324:575..13281696318708.9048228-CDS-E-siliculosus-1a_F_contig13324:575..1328Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13324 576..1328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13324.2013.1prot_E-siliculosus-1a_F_contig13324.2013.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13324 576..1328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13324.2013.1

>prot_E-siliculosus-1a_F_contig13324.2013.1 ID=prot_E-siliculosus-1a_F_contig13324.2013.1|Name=mRNA_E-siliculosus-1a_F_contig13324.2013.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=251bp
LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIV
EDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFG
ARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPI
DVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVV
RDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHALTRSK
*
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mRNA from alignment at E-siliculosus-1a_F_contig13324:576..1328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13324.2013.1 ID=mRNA_E-siliculosus-1a_F_contig13324.2013.1|Name=mRNA_E-siliculosus-1a_F_contig13324.2013.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=753bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13324:576..1328- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTTGATCAACTGCTGGTCAGCCAAGGGCTGGCCAACTCTCGTACCCGCGC GCAGCGGCTCATCCGCCATGGAAGAGTGCGCTTAGCTAATAGCGGCAAAC CGTTAACCAAAGTCTCAGAAAAATGGCCCGAAACTACTCGTTTTATCGTT GAGGATGATCCGGAAGAGCGCTATGTGTCCCGTGCTGGGTTGAAGCTTGA AGCCGTGCTTACCACGCTTGAGCTACGCTTTGACGACTGTATTGTGCTCG ATATCGGACAATCTACTGGGGGGTTCACCGACTGCGCACTGCGTTTTGGC GCACGCCATGTGGTGGGCGTGGAAGTCGGTCATGGGCAACTTGCTGCTGA GCTACGCGGCAACCCATGCGTTACCTGTCTGGAAGGTGTGAATGCTCGCG CTATGAGCGGCTCAGCTGCCCTCAAGAGCGTGCTGGCCGTTAAGCCCATT GATGTCGCGGTAATGGACGTGTCATTTATATCTCAAACGCTGATTCTTCC CGAAATTGCCGCCCTGCTACCACCGGGCGGACAACTAATTTCACTGGTTA AACCACAGTTTGAACTGAACCCCGGCGCCTTGGATAAACGTGGTGTAGTA CGCGATACCAAGCTTTTTGCAGACGTCGAAGCTAGTATTCGAGGCGCCTG TGAAAACGCCGGTTTTAGCATTCATCACTGGCAGGAGAGCCCTATCACCG GGGGGGATGGAAATCGAGAGTTTCTCCTCCATGCACTCACTAGATCTAAA TAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13324:576..1328-

>mRNA_E-siliculosus-1a_F_contig13324.2013.1 ID=mRNA_E-siliculosus-1a_F_contig13324.2013.1|Name=mRNA_E-siliculosus-1a_F_contig13324.2013.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1506bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13324:576..1328- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTTGATCAACTGCTGGTCAGCCAAGGGCTGGCCAACTCTCGTACCCGCGC
GCAGCGGCTCATCCGCCATGGAAGAGTGCGCTTAGCTAATAGCGGCAAAC
CGTTAACCAAAGTCTCAGAAAAATGGCCCGAAACTACTCGTTTTATCGTT
GAGGATGATCCGGAAGAGCGCTATGTGTCCCGTGCTGGGTTGAAGCTTGA
AGCCGTGCTTACCACGCTTGAGCTACGCTTTGACGACTGTATTGTGCTCG
ATATCGGACAATCTACTGGGGGGTTCACCGACTGCGCACTGCGTTTTGGC
GCACGCCATGTGGTGGGCGTGGAAGTCGGTCATGGGCAACTTGCTGCTGA
GCTACGCGGCAACCCATGCGTTACCTGTCTGGAAGGTGTGAATGCTCGCG
CTATGAGCGGCTCAGCTGCCCTCAAGAGCGTGCTGGCCGTTAAGCCCATT
GATGTCGCGGTAATGGACGTGTCATTTATATCTCAAACGCTGATTCTTCC
CGAAATTGCCGCCCTGCTACCACCGGGCGGACAACTAATTTCACTGGTTA
AACCACAGTTTGAACTGAACCCCGGCGCCTTGGATAAACGTGGTGTAGTA
CGCGATACCAAGCTTTTTGCAGACGTCGAAGCTAGTATTCGAGGCGCCTG
TGAAAACGCCGGTTTTAGCATTCATCACTGGCAGGAGAGCCCTATCACCG
GGGGGGATGGAAATCGAGAGTTTCTCCTCCATGCACTCACTAGATCTAAA
TAACTTGATCAACTGCTGGTCAGCCAAGGGCTGGCCAACTCTCGTACCCG
CGCGCAGCGGCTCATCCGCCATGGAAGAGTGCGCTTAGCTAATAGCGGCA
AACCGTTAACCAAAGTCTCAGAAAAATGGCCCGAAACTACTCGTTTTATC
GTTGAGGATGATCCGGAAGAGCGCTATGTGTCCCGTGCTGGGTTGAAGCT
TGAAGCCGTGCTTACCACGCTTGAGCTACGCTTTGACGACTGTATTGTGC
TCGATATCGGACAATCTACTGGGGGGTTCACCGACTGCGCACTGCGTTTT
GGCGCACGCCATGTGGTGGGCGTGGAAGTCGGTCATGGGCAACTTGCTGC
TGAGCTACGCGGCAACCCATGCGTTACCTGTCTGGAAGGTGTGAATGCTC
GCGCTATGAGCGGCTCAGCTGCCCTCAAGAGCGTGCTGGCCGTTAAGCCC
ATTGATGTCGCGGTAATGGACGTGTCATTTATATCTCAAACGCTGATTCT
TCCCGAAATTGCCGCCCTGCTACCACCGGGCGGACAACTAATTTCACTGG
TTAAACCACAGTTTGAACTGAACCCCGGCGCCTTGGATAAACGTGGTGTA
GTACGCGATACCAAGCTTTTTGCAGACGTCGAAGCTAGTATTCGAGGCGC
CTGTGAAAACGCCGGTTTTAGCATTCATCACTGGCAGGAGAGCCCTATCA
CCGGGGGGGATGGAAATCGAGAGTTTCTCCTCCATGCACTCACTAGATCT
AAATAA
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