mRNA_E-siliculosus-1a_F_contig13324.2013.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A0F9V308_9ZZZZ (S4 domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9V308_9ZZZZ) HSP 1 Score: 425 bits (1093), Expect = 2.680e-149 Identity = 218/248 (87.90%), Postives = 228/248 (91.94%), Query Frame = 1
Query: 1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHALTR 744
LDQLLVSQGLANSRTRAQRLIRHGRVRLANSG LTK SEKWPE TRF VEDDPEERYVSRAGLKLEAVL TLELRFDDC+VLDIGQSTGGFTDCALRFGA+HVVG+EVGHGQLAAELRGNP VTCLEG+NAR MS S ALKSVLA+ PI++AVMDVSFISQTLILPEIAALLP GGQLISLVKPQFELNPGALDKRGVVRD LFADVEASIR AC+ G I HWQESPITGGDGNREFLLHA+T+
Sbjct: 4 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGNLLTKASEKWPENTRFRVEDDPEERYVSRAGLKLEAVLKTLELRFDDCVVLDIGQSTGGFTDCALRFGAQHVVGIEVGHGQLAAELRGNPHVTCLEGINARDMSSSEALKSVLAITPINIAVMDVSFISQTLILPEIAALLPSGGQLISLVKPQFELNPGALDKRGVVRDATLFADVEASIRRACDECGLIIQHWQESPITGGDGNREFLLHAITK 251
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A101D3G6_9GAMM (Hemolysin A n=1 Tax=Halomonas sp. 54_146 TaxID=1635257 RepID=A0A101D3G6_9GAMM) HSP 1 Score: 414 bits (1063), Expect = 9.960e-145 Identity = 209/249 (83.94%), Postives = 228/249 (91.57%), Query Frame = 1
Query: 1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHALTRS 747
LDQLLVSQGLANSRTRAQRLIRHGRVRLA +GKPLTK SEKWPE TRF VEDDPEERYVSRAGLKLEAVLT L LRFDD +VLD+GQSTGGFTDCALRFGARHV+GVEVGHGQLA EL+ +P VTCLEG+NAR M + AL+SVLAV+PI++A+MDVSFISQTLILPEIAALLPPGGQLISLVKPQFEL PGALDKRGVVRD K FADVEASIR AC++ G +IHHWQESPITGGDGNREFLLHA+ ++
Sbjct: 4 LDQLLVSQGLANSRTRAQRLIRHGRVRLAENGKPLTKASEKWPEDTRFEVEDDPEERYVSRAGLKLEAVLTALALRFDDSVVLDVGQSTGGFTDCALRFGARHVIGVEVGHGQLAPELQNDPRVTCLEGLNARYMRSAEALQSVLAVQPINIAIMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELTPGALDKRGVVRDAKRFADVEASIRSACDHCGLTIHHWQESPITGGDGNREFLLHAVKQA 252
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A0D6E6W7_9GAMM (Hemolysin A n=6 Tax=Halomonas TaxID=2745 RepID=A0A0D6E6W7_9GAMM) HSP 1 Score: 407 bits (1047), Expect = 2.730e-142 Identity = 208/246 (84.55%), Postives = 222/246 (90.24%), Query Frame = 1
Query: 1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHAL 738
LDQLLVSQGLANSRTRAQRLIRHGR+RLA+SGKPL K SEKWPE TRF VEDDPEERYVSRAGLKLEAVLT LELRFD C VLDIGQSTGGFTDCALRFGARHV+GVEVGHGQLA ELRG+P VTCLEG+NAR+MS S AL SVL+V+PID A+MDVSFISQTLILPEIAALLPP GQLISLVKPQFEL PGALDKRGVVRD K FA+VE +IR C+ G +I HWQESPITGGDGNREFLLHA+
Sbjct: 4 LDQLLVSQGLANSRTRAQRLIRHGRIRLADSGKPLIKASEKWPEETRFEVEDDPEERYVSRAGLKLEAVLTALELRFDGCSVLDIGQSTGGFTDCALRFGARHVIGVEVGHGQLAPELRGDPRVTCLEGLNARSMSSSEALSSVLSVQPIDSAIMDVSFISQTLILPEIAALLPPEGQLISLVKPQFELTPGALDKRGVVRDAKRFAEVETNIRSTCDACGLTIRHWQESPITGGDGNREFLLHAV 249
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A6I7MUK4_HALSX (TlyA family RNA methyltransferase n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A6I7MUK4_HALSX) HSP 1 Score: 399 bits (1025), Expect = 6.340e-139 Identity = 205/246 (83.33%), Postives = 222/246 (90.24%), Query Frame = 1
Query: 1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHAL 738
LDQLLVSQGL +SRTRAQRLIRHG+VRLA+SGK LTK SEKWPE T F VE+DPEERYVSRAGLKLEAVL TL LR D C VLDIGQSTGGFTDCALRFGARHV+GVEVGHGQLA+ELRG+P VTCLEG+NAR+MS + +LK+VLA +PIDVAVMDVSFISQTLILPEIA LLP GGQLISLVKPQFEL+PGALDKRGVVRD K FA+VEASIR AC +G SI HWQESPITGGDGNREFLLHA+
Sbjct: 4 LDQLLVSQGLTSSRTRAQRLIRHGKVRLADSGKTLTKASEKWPEGTLFSVEEDPEERYVSRAGLKLEAVLKTLTLRLDGCTVLDIGQSTGGFTDCALRFGARHVIGVEVGHGQLASELRGDPRVTCLEGLNARSMSSAESLKNVLAAQPIDVAVMDVSFISQTLILPEIATLLPQGGQLISLVKPQFELSPGALDKRGVVRDAKRFAEVEASIRRACHESGLSIQHWQESPITGGDGNREFLLHAV 249
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A2A3XD47_9GAMM (TlyA family rRNA (Cytidine-2'-O)-methyltransferase n=1 Tax=Halomonas sp. JB37 TaxID=2024405 RepID=A0A2A3XD47_9GAMM) HSP 1 Score: 398 bits (1023), Expect = 1.230e-138 Identity = 205/249 (82.33%), Postives = 220/249 (88.35%), Query Frame = 1
Query: 1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHALTRS 747
LDQLLVS GLANSRTRAQRLIRHGRV LANSG+ LTKVSEKWP+TTRFIVEDDPEERYVSRAGLKLE VLT L LRFD C+VLDIGQSTGGFTDCALRFGARHV+GVEVGHGQLA +LR +P VTCLEG+NAR MS + L VLA +PI VA+MDVSFISQTLILPE+AALLPP GQLISLVKPQFEL+PGALDKRGVVRD LFADVEASIR AC + G +I HWQESPITG DGNREFLLHA T +
Sbjct: 4 LDQLLVSLGLANSRTRAQRLIRHGRVSLANSGRVLTKVSEKWPDTTRFIVEDDPEERYVSRAGLKLEGVLTALGLRFDGCVVLDIGQSTGGFTDCALRFGARHVIGVEVGHGQLAEQLRTDPRVTCLEGLNARHMSSATPLIHVLADQPIHVAIMDVSFISQTLILPEVAALLPPDGQLISLVKPQFELSPGALDKRGVVRDATLFADVEASIRSACHDCGLTIRHWQESPITGSDGNREFLLHAATEA 252
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A0D5M178_9GAMM (Hemolysin A n=5 Tax=Halomonas TaxID=2745 RepID=A0A0D5M178_9GAMM) HSP 1 Score: 397 bits (1020), Expect = 4.220e-138 Identity = 203/250 (81.20%), Postives = 220/250 (88.00%), Query Frame = 1
Query: 1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHALTRSK 750
LDQLLVSQGLANSRTRAQRLIRHGR+RLA++GKPLTK SEKWPE TRF VEDDPEERYVSRAGLKLEAVLTTLE+R D+ +VLDIGQSTGGFTDCALRFGARHV+GVEVGHGQLA ELRG+P VTCLEG+NAR MS ALKSVLA +PI A+MDVSFISQTLILPEIAALLPP G LISLVKPQFELN ALDKRGVVRD + + DVE +IR AC+ G +I HWQESPITGGDGNREFLLHA+ K
Sbjct: 5 LDQLLVSQGLANSRTRAQRLIRHGRIRLASNGKPLTKASEKWPEDTRFDVEDDPEERYVSRAGLKLEAVLTTLEMRLDETVVLDIGQSTGGFTDCALRFGARHVIGVEVGHGQLAPELRGDPRVTCLEGLNARYMSSDEALKSVLAAQPIHSAIMDVSFISQTLILPEIAALLPPEGHLISLVKPQFELNAEALDKRGVVRDARRYNDVETNIRSACDACGLAIRHWQESPITGGDGNREFLLHAIKERK 254
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A4R7YAT9_9GAMM (23S rRNA (Cytidine1920-2'-O)/16S rRNA (Cytidine1409-2'-O)-methyltransferase n=1 Tax=Halomonas alkaliantarctica TaxID=232346 RepID=A0A4R7YAT9_9GAMM) HSP 1 Score: 395 bits (1015), Expect = 2.040e-137 Identity = 203/246 (82.52%), Postives = 222/246 (90.24%), Query Frame = 1
Query: 1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHAL 738
LDQLLVSQ LANSRTRAQRLIRHGRVRLA++GKPLTK SEKWPE TRF V+DDPEERYVSRAGLKLEAVLT LELRFD+ +VLDIGQSTGGF+DCALRFGARHV+GVEVGHGQLAAELRG+P VTCLEG+NAR+M+ S AL SVL+ PI+ A+MDVSFISQTLIL EIAALLPPGGQLISLVKPQFEL PGALDKRGVVRD K FA+VEA+IR +C +I HWQESPITGGDGNREFLLHA+
Sbjct: 4 LDQLLVSQELANSRTRAQRLIRHGRVRLADNGKPLTKASEKWPEDTRFEVDDDPEERYVSRAGLKLEAVLTALELRFDNAVVLDIGQSTGGFSDCALRFGARHVIGVEVGHGQLAAELRGDPRVTCLEGLNARSMTSSEALTSVLSAHPINSAIMDVSFISQTLILHEIAALLPPGGQLISLVKPQFELTPGALDKRGVVRDAKHFAEVEANIRRSCNACELNIQHWQESPITGGDGNREFLLHAV 249
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A365TIG8_9GAMM (TlyA family rRNA (Cytidine-2'-O)-methyltransferase n=1 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A365TIG8_9GAMM) HSP 1 Score: 394 bits (1012), Expect = 5.840e-137 Identity = 201/246 (81.71%), Postives = 220/246 (89.43%), Query Frame = 1
Query: 1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHAL 738
LDQLLVSQGL +SRTRAQRLIRHGRVRLA +GKPLTKVSEKWPE T F +EDD EERYVSRAGLKLEAVL LELRFDDC+VLDIGQSTGGFTDCALRFGA HV+GVEVGHGQLAAELR +P VTCLEG+NAR+MS + AL S+L V+PID AVMDVSFISQTLI+PEIAALLP GGQLISLVKPQFEL PGALDKRG+VR+ K +A+VEA+IR AC +IHHWQESPITGGDGNREFLLHA+
Sbjct: 4 LDQLLVSQGLTSSRTRAQRLIRHGRVRLAENGKPLTKVSEKWPEDTCFEMEDDAEERYVSRAGLKLEAVLIALELRFDDCVVLDIGQSTGGFTDCALRFGACHVIGVEVGHGQLAAELRNDPRVTCLEGLNARSMSSAKALNSLLTVQPIDSAVMDVSFISQTLIIPEIAALLPAGGQLISLVKPQFELTPGALDKRGIVRNAKHYAEVEANIRSACAACALAIHHWQESPITGGDGNREFLLHAV 249
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A1A9R5R9_9GAMM (Hemolysin n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A1A9R5R9_9GAMM) HSP 1 Score: 394 bits (1011), Expect = 8.290e-137 Identity = 201/246 (81.71%), Postives = 221/246 (89.84%), Query Frame = 1
Query: 1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHAL 738
LDQLLVSQGLANSRTRAQRLIRHGR+ LA++GKPL K SEKWPE TRF VEDDPEERYVSRAGLKLEAVLTTLELRFD C+VLDIGQSTGGF+DCALRFGARHV+GVEVGHGQLA+ELR +P VTCLEG+NAR+MS S L VL+V+PID A+MDVSFISQTLILPEIAALLP GG+LISLVKPQFEL+P AL+KRGVVRDTK F+ VEA+IR AC G +I HWQESPITG DGNREFLLHA+
Sbjct: 4 LDQLLVSQGLANSRTRAQRLIRHGRISLADNGKPLIKASEKWPEDTRFAVEDDPEERYVSRAGLKLEAVLTTLELRFDGCVVLDIGQSTGGFSDCALRFGARHVIGVEVGHGQLASELRDDPRVTCLEGLNARSMSSSEVLNRVLSVQPIDSAIMDVSFISQTLILPEIAALLPLGGELISLVKPQFELSPDALNKRGVVRDTKHFSAVEANIRSACGVCGLTIRHWQESPITGSDGNREFLLHAI 249
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Match: A0A265DTT6_9GAMM (TlyA family rRNA (Cytidine-2'-O)-methyltransferase n=10 Tax=Halomonas TaxID=2745 RepID=A0A265DTT6_9GAMM) HSP 1 Score: 393 bits (1009), Expect = 1.670e-136 Identity = 201/246 (81.71%), Postives = 216/246 (87.80%), Query Frame = 1
Query: 1 LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVEDDPEERYVSRAGLKLEAVLTTLELRFDDCIVLDIGQSTGGFTDCALRFGARHVVGVEVGHGQLAAELRGNPCVTCLEGVNARAMSGSAALKSVLAVKPIDVAVMDVSFISQTLILPEIAALLPPGGQLISLVKPQFELNPGALDKRGVVRDTKLFADVEASIRGACENAGFSIHHWQESPITGGDGNREFLLHAL 738
LDQLLVSQGLANSRTRAQRLIRHGR+RLA +GKPLTK SEKWP+ TRF VEDDPEERYVSRAGLKLEAVL L+LRFDD +VLDIGQSTGGF+DCALRFGARHV+G+EVGHGQLA ELR +P VTCLEGVNAR+MS S L SVL PID A+MDVSFISQTLILPEIAALLP GGQLISLVKPQFEL PGALDKRGVVRD K F+ VEA+IR C G +I HWQESPITGGDGNREFLLHA+
Sbjct: 4 LDQLLVSQGLANSRTRAQRLIRHGRIRLAENGKPLTKASEKWPDDTRFEVEDDPEERYVSRAGLKLEAVLKALDLRFDDAVVLDIGQSTGGFSDCALRFGARHVIGIEVGHGQLAPELRCDPRVTCLEGVNARSMSSSQVLNSVLVTMPIDSAIMDVSFISQTLILPEIAALLPLGGQLISLVKPQFELTPGALDKRGVVRDAKHFSVVEANIRSTCNACGLTIRHWQESPITGGDGNREFLLHAV 249 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13324.2013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13324.2013.1 >prot_E-siliculosus-1a_F_contig13324.2013.1 ID=prot_E-siliculosus-1a_F_contig13324.2013.1|Name=mRNA_E-siliculosus-1a_F_contig13324.2013.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=251bp LDQLLVSQGLANSRTRAQRLIRHGRVRLANSGKPLTKVSEKWPETTRFIVback to top mRNA from alignment at E-siliculosus-1a_F_contig13324:576..1328- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13324.2013.1 ID=mRNA_E-siliculosus-1a_F_contig13324.2013.1|Name=mRNA_E-siliculosus-1a_F_contig13324.2013.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=753bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13324:576..1328- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13324:576..1328- >mRNA_E-siliculosus-1a_F_contig13324.2013.1 ID=mRNA_E-siliculosus-1a_F_contig13324.2013.1|Name=mRNA_E-siliculosus-1a_F_contig13324.2013.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1506bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13324:576..1328- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |