mRNA_E-siliculosus-1a_F_contig1332.2008.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1332.2008.1
Unique NamemRNA_E-siliculosus-1a_F_contig1332.2008.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1332.2008.1 vs. uniprot
Match: A0A6H5KVK9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVK9_9PHAE)

HSP 1 Score: 570 bits (1469), Expect = 2.450e-200
Identity = 276/290 (95.17%), Postives = 283/290 (97.59%), Query Frame = 1 
Query:    1 MEATRKLSAADGSSGGTQEPPHATDAEEEERVQQLAAGELTSAASFGT-GDCDGYDASNRFRSNIESVEKPRQIVVLVLTIAGASYLGFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLFARPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELTASAVIGQLREVWFLAHLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSL 867
            M+ATRKL+AAD SSGGTQ+PPH TDAEEEERVQQL AGELTSAASFG  GDCDGYDASNRFRSN+ESVEKPRQIVVLV+TIAGASYLGFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLF RPHPGVWRIVHGVGMLYLFA+SVLLVHPKDEAQRLLAIFIPDVKGYTLSRFE GSLECEL+ASAVIGQLREVWFLAHLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSL
Sbjct:    1 MQATRKLNAADSSSGGTQKPPHPTDAEEEERVQQLTAGELTSAASFGAAGDCDGYDASNRFRSNVESVEKPRQIVVLVVTIAGASYLGFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFALSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEVGSLECELSASAVIGQLREVWFLAHLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSL 290
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BLAST of mRNA_E-siliculosus-1a_F_contig1332.2008.1 vs. uniprot
Match: A0A836CG66_9STRA (Phosphatidylserine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG66_9STRA)

HSP 1 Score: 313 bits (801), Expect = 1.790e-99
Identity = 145/261 (55.56%), Postives = 179/261 (68.58%), Query Frame = 1 
Query:  139 GTGDCDGYDAS-------NRFRSNIESVEKPRQIVVLVLTIAGASYLGFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLFARPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLS---------RFEAGSLECELTASAVIGQLREVWFLAHLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLVR 873
            G+  C G D+S       N FRSN + +E+PRQIV L+  +A A YLGF Q+D+D D  TRAA  GV F+FL HCFLQCRD+LF RPHPGVWR+VHG+GM+YL  V+VLL H + EA+RLL++   D++    +            A  ++C L+  AV+GQLREVWF AH+ GWW KMCLFRDW VCW LS GFEL+ELSMGWL+PQF ECWWDS+ ID  GAN++GM LGL TLRFLE + YDW   EK     +   R
Sbjct:   45 GSDSCGGEDSSEEEFGRNNMFRSNTDFIEEPRQIVTLMAMVAVAGYLGFRQDDADRDTGTRAALAGVTFIFLAHCFLQCRDTLFVRPHPGVWRVVHGLGMVYLLGVAVLLFHTRAEARRLLSVVFTDMESAAAAPGGADGAAPASAAEEMDCTLSWGAVLGQLREVWFAAHVAGWWGKMCLFRDWHVCWALSAGFELVELSMGWLIPQFRECWWDSVFIDFFGANLIGMGLGLATLRFLENQDYDWKKGEKGEGRGKGAAR 305
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BLAST of mRNA_E-siliculosus-1a_F_contig1332.2008.1 vs. uniprot
Match: I2CSE4_NANGC (Phosphatidylserine synthase 2 (Fragment) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=I2CSE4_NANGC)

HSP 1 Score: 273 bits (699), Expect = 3.770e-85
Identity = 127/262 (48.47%), Postives = 184/262 (70.23%), Query Frame = 1 
Query:  172 NRFRSNIESVEKPRQIVVLVLTIAGASYLGFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLFARPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSL-ECELTASAVIGQLREVWFLAHLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWN-SKEKSHELARSLVRGRAIRPASKHRRSMYSIGVPVLLVIV 951
            N+FR++++ VE+PRQ+++L   I    Y G+A +   P+ N R A   + F+FL HCFLQCRDS+  RPHPGVWR+VHG+GMLYL  + V++VH K  A+ L+ +F PD+ G T  +     L +C LTA+++  QL EVWF+AH +GWW KM +FRDWGVCW+LS+GFE+LE ++ +L+P+F ECWWDSL+ID+LGAN+LGM  G  TL+ LET  +DW+ ++++    AR L++  +    +++R SM+S     L VIV
Sbjct:   72 NQFRAHVDFVERPRQLLILGGMIMVMMYAGYAHHSPTPEGNIRMALFAIAFIFLTHCFLQCRDSVLIRPHPGVWRVVHGIGMLYLMCLGVVMVHDKAGARALVRVFFPDI-GETPQKSPTPELMDCSLTAASIWHQLTEVWFVAHALGWWGKMVMFRDWGVCWILSLGFEVLECTLQFLIPEFKECWWDSLLIDVLGANLLGMGAGWLTLQALETHAFDWSGTQDQRVGRARRLIQRLSPYSFTRYRWSMFSSFKRFLQVIV 332
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BLAST of mRNA_E-siliculosus-1a_F_contig1332.2008.1 vs. uniprot
Match: A0A6G0X7J1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7J1_9STRA)

HSP 1 Score: 244 bits (624), Expect = 3.690e-74
Identity = 112/233 (48.07%), Postives = 145/233 (62.23%), Query Frame = 1 
Query:  166 ASNRFRSNIES--------VEKPRQIVVLVLTIAGASYLGFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLFARPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELTASAVIGQLREVWFLAHLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKE 840
            +SN FR++ E          E+PRQI+ L L +   +Y  F  +  D   N R   M   F+FLV+CFLQ RD L  RPHPGVWRIVHG+ +LYL  ++ L V     A   + +  P+V     S+     LECEL AS +   +  +WFLAH+ GWW KMC+FRDW  CWVL +GFELLEL    ++P F ECWWDSL +DLLGAN+LGM LG  TL++LET+ YDW+ K+
Sbjct:   53 SSNAFRTSREHDFEGMLGFKEEPRQILFLFLVVVTIAYYSFTHDSDDFAQNVRNGGMSAAFIFLVYCFLQTRDGLLVRPHPGVWRIVHGLAVLYLLIMAALSVQNAQSATAAIRVLFPEVGVKKESKLPRAPLECELNASTIQRGVSSIWFLAHVTGWWGKMCMFRDWRFCWVLGIGFELLELIFQCIIPDFQECWWDSLFMDLLGANLLGMCLGSLTLKYLETKEYDWSGKK 285
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BLAST of mRNA_E-siliculosus-1a_F_contig1332.2008.1 vs. uniprot
Match: A0A225X2S3_9STRA (Phosphatidylserine synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X2S3_9STRA)

HSP 1 Score: 238 bits (607), Expect = 1.170e-71
Identity = 106/233 (45.49%), Postives = 149/233 (63.95%), Query Frame = 1 
Query:  163 DASNRFR----SNIESV----EKPRQIVVLVLTIAGASYLGFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLFARPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELTASAVIGQLREVWFLAHLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK 837
            D+ N FR    S +E +    E+PRQIVVL++ + G SY  F  +  DP  N R A      +FLV+CFLQ RD L  RPHPGVWR+VHG  ++YL  ++ +LV  ++ A + +    P+V G          L+CE+ + ++   +  +WF AH+ GWW KMC+FRDW  CWVLS+ FE+LEL+  +++P F ECWWDSL++DLLGAN+LGM LG  TL  LE++ YDW+ +
Sbjct:   45 DSYNTFRASHGSEVEGLLLFPEQPRQIVVLLMVVLGFSYYSFTHDSQDPVQNARTALFAAILIFLVYCFLQTRDGLMMRPHPGVWRVVHGCSVIYLLLLAAMLVQNRESAMQAMQYVFPEV-GSRPKTVAPAQLQCEINSESLTRGVTSIWFFAHVTGWWGKMCMFRDWRFCWVLSIAFEILELAFQFVIPDFQECWWDSLLLDLLGANMLGMCLGRVTLWMLESKEYDWSGR 276
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BLAST of mRNA_E-siliculosus-1a_F_contig1332.2008.1 vs. uniprot
Match: A0A6S9GKL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GKL1_HETAK)

HSP 1 Score: 236 bits (602), Expect = 1.340e-70
Identity = 115/248 (46.37%), Postives = 157/248 (63.31%), Query Frame = 1 
Query:  166 ASNRFRSNIESVEKPRQIVVLVLTIA----GASYLGFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLFARPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGS--------LECELTASAVIGQLREVWFLAHLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLVR 873
            A NRFR+N E VE+PRQ+VVL   +     GA    + +  +D  +  R     + F FLVHCFLQCRD+L  RPHPGVWR+VHG+GMLYL  ++ LL   + +A R + +  PDV     +R EA +         +C  +   ++ +  EVWF AH++GWW KMC+FR+W +C +LS+GFE+LELS+ WL+PQF+ECWWDSLI D + AN+ GM  G  TLRFLET  ++W   +    L R+L R
Sbjct:   48 AENRFRANAEFVERPRQLVVLTAVVGAVALGAFLSSWGEACADEGSRFRLTVAVMSFCFLVHCFLQCRDTLLVRPHPGVWRVVHGLGMLYLLFLAFLLCQDRADALRYVRLLAPDV-----ARLEAQAGASALHTAQDCGFSVPRLVEEFTEVWFYAHVLGWWGKMCIFRNWTLCMILSIGFEVLELSLTWLIPQFNECWWDSLISDAVIANMSGMYAGHLTLRFLETHQFNWGGYQP--RLQRALGR 288
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BLAST of mRNA_E-siliculosus-1a_F_contig1332.2008.1 vs. uniprot
Match: A0A5D6XXF1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXF1_9STRA)

HSP 1 Score: 235 bits (599), Expect = 2.860e-70
Identity = 112/240 (46.67%), Postives = 154/240 (64.17%), Query Frame = 1 
Query:  154 DGYDASNRFR----SNIESV----EKPRQIVVLVLTIAGASYLGFAQNDSDPDANTR-AASMGVGFLFLVHCFLQCRDSLFARPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAG-SLECELTASAVIGQLREVWFLAHLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKEK 843
            D + + N FR    S +E++    E+PRQ+ VL L +A  SY  F  +  D   N R   S GV  +FLV+CFLQ RD L  RPHPG+WR+VHG  ++YL  ++ + V  +D A   +  F P+V   +L++  AG  LEC++  + +   +  +WFLAH+ GWW KMC+FRDW  CWVLSV FE LEL+  +++P F ECWWDSL +DLLGAN+LGM LG  TL  LET+ YDW+ K++
Sbjct:   56 DAFASDNMFRAARGSGVENMLLFREQPRQLAVLALVVAAVSYFSFTHDSQDVTENVRNGLSTGV-LIFLVYCFLQTRDGLMVRPHPGLWRVVHGCSVVYLLLLAAMSVQNRDGAILSMQFFFPEVG--SLAKSPAGVKLECDINGNTIYRGVSSIWFLAHVTGWWGKMCMFRDWRFCWVLSVAFEFLELTFQFVIPDFQECWWDSLFMDLLGANLLGMFLGRVTLWLLETKEYDWSGKKE 292
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BLAST of mRNA_E-siliculosus-1a_F_contig1332.2008.1 vs. uniprot
Match: A0A3R7J365_9STRA (Uncharacterized protein (Fragment) n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J365_9STRA)

HSP 1 Score: 231 bits (590), Expect = 9.480e-70
Identity = 98/212 (46.23%), Postives = 137/212 (64.62%), Query Frame = 1 
Query:  202 EKPRQIVVLVLTIAGASYLGFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLFARPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELTASAVIGQLREVWFLAHLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK 837
            E+PRQ  VL L + G SY  F  +  D   N R A      +FLV+CFLQ RD L  RPHPGVWR+VHG  ++YL  ++ +L+  ++ A + +    P+V G          LECE+ + ++   +  +WF AH+ GWW KMC+FRDW  CWVLS+ FE+LEL++ +++P F ECWWDSL++DLLGAN+LGM LG  TL  LE++ YDW+ +
Sbjct:   15 EQPRQFFVLFLVVLGFSYYSFTHDSQDTTQNVRTALFAAILVFLVYCFLQTRDGLMMRPHPGVWRVVHGCSVVYLLILAAMLLQNRESAMKAMQYLFPEV-GSRPKTVAPAQLECEINSKSLTRGVTSIWFFAHVTGWWGKMCMFRDWRFCWVLSIAFEILELALQFVIPDFQECWWDSLLLDLLGANMLGMCLGRVTLWLLESKEYDWSGR 225
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BLAST of mRNA_E-siliculosus-1a_F_contig1332.2008.1 vs. uniprot
Match: H3GN27_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=H3GN27_PHYRM)

HSP 1 Score: 233 bits (594), Expect = 1.060e-69
Identity = 105/227 (46.26%), Postives = 145/227 (63.88%), Query Frame = 1 
Query:  172 NRFR-SNIESV----EKPRQIVVLVLTIAGASYLGFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLFARPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELTASAVIGQLREVWFLAHLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK 837
            N FR S +E +    E+PRQI VL+L +AG SY  F  +      N R A      +FLV+CFLQ RD L  RPHPGVWR+VHG  ++YL  ++ +LV  ++ A R +    P+V G          L+CE+   ++   +  +WF+AH+ GWW KMC+FRDW  CWVLS+ FE+LEL+  +++P F ECWWDSL++DLLGAN+LGM LG  TL  LE++ YDW+ +
Sbjct:   53 NTFRASEVEGLLLFPEQPRQIFVLLLVVAGFSYYSFTHDSQSTVQNVRNALFAAILVFLVYCFLQTRDGLMMRPHPGVWRVVHGCSVVYLLLLAAMLVQNREGAMRAMQFLFPEV-GSRPKTLAPAQLQCEINTESLTRGVTSIWFVAHVTGWWGKMCMFRDWRFCWVLSIAFEILELAFQFVIPDFQECWWDSLLLDLLGANLLGMCLGRVTLWLLESKEYDWSGR 278
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BLAST of mRNA_E-siliculosus-1a_F_contig1332.2008.1 vs. uniprot
Match: A0A485KMU7_9STRA (Aste57867_9260 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMU7_9STRA)

HSP 1 Score: 232 bits (591), Expect = 3.450e-69
Identity = 108/234 (46.15%), Postives = 143/234 (61.11%), Query Frame = 1 
Query:  166 ASNRFRSNIESV--------EKPRQIVVLVLTIAGASYLGFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLFARPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYT-LSRFEAGSLECELTASAVIGQLREVWFLAHLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSKE 840
            +SN FR + E          E+PRQI+ L L +   +Y  F  +  D   N R  S+   F+FLV+CFLQ RD L  RPHPGVWRIVHG+ +LYL  ++ L V     A   + +  P+V G   +       LEC+L A+++   +  +WFLAH+ GWW KMC+FRDW  CWVL + FELLEL    ++P F ECWWDSL +DLLGAN LGM  G  TL++LET+ YDW+ K+
Sbjct:   55 SSNAFRMSREHEFEGMLGFKEEPRQILFLFLVVVSVAYYSFTHDSDDFAQNVRNGSISAAFIFLVYCFLQTRDGLLVRPHPGVWRIVHGLAVLYLLIMAALSVQNAKSATAAIRVLFPEVGGKRKVVTTPRPPLECDLNATSLHRGISSIWFLAHITGWWGKMCMFRDWRFCWVLGIMFELLELIFQCIIPDFQECWWDSLFMDLLGANFLGMCAGSLTLKYLETKQYDWSGKK 288
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1332.2008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVK9_9PHAE2.450e-20095.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CG66_9STRA1.790e-9955.56Phosphatidylserine synthase n=1 Tax=Tribonema minu... [more]
I2CSE4_NANGC3.770e-8548.47Phosphatidylserine synthase 2 (Fragment) n=2 Tax=M... [more]
A0A6G0X7J1_9STRA3.690e-7448.07Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A225X2S3_9STRA1.170e-7145.49Phosphatidylserine synthase n=1 Tax=Phytophthora m... [more]
A0A6S9GKL1_HETAK1.340e-7046.37Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5D6XXF1_9STRA2.860e-7046.67Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3R7J365_9STRA9.480e-7046.23Uncharacterized protein (Fragment) n=4 Tax=Phytoph... [more]
H3GN27_PHYRM1.060e-6946.26Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A485KMU7_9STRA3.450e-6946.15Aste57867_9260 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1332contigE-siliculosus-1a_F_contig1332:93..4939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size951
Model size951
Exons5
Ec32 orthologEc-01_005920.1
Ec32 ortholog descriptionPhosphatidylserine synthase
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC2.7.8.29
EggNOG OGsKOG2735@1,KOG2735@2759
EggNOG free text desc.Phosphatidylserine synthase
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0019637,GO:0031984,GO:0042175,GO:0042398,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901564,GO:1901566,GO:1901576
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
KEGG ReactionR07376,R07377
KEGG koko:K08729,ko:K08730
KEGG rclassRC00017,RC02950
Preferred namePTDSS1
Seed eggNOG ortholog2880.D7FVQ2
Seed ortholog evalue4.1e-162
Seed ortholog score577.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1332.2008.1prot_E-siliculosus-1a_F_contig1332.2008.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1332 93..4939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927852.6937156-CDS-E-siliculosus-1a_F_contig1332:92..3291622927852.6937156-CDS-E-siliculosus-1a_F_contig1332:92..329Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1332 93..329 -
1696318708.6001492-CDS-E-siliculosus-1a_F_contig1332:92..3291696318708.6001492-CDS-E-siliculosus-1a_F_contig1332:92..329Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1332 93..329 -
1622927852.7126415-CDS-E-siliculosus-1a_F_contig1332:909..10091622927852.7126415-CDS-E-siliculosus-1a_F_contig1332:909..1009Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1332 910..1009 -
1696318708.6108203-CDS-E-siliculosus-1a_F_contig1332:909..10091696318708.6108203-CDS-E-siliculosus-1a_F_contig1332:909..1009Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1332 910..1009 -
1622927852.7290082-CDS-E-siliculosus-1a_F_contig1332:2136..22951622927852.7290082-CDS-E-siliculosus-1a_F_contig1332:2136..2295Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1332 2137..2295 -
1696318708.6207855-CDS-E-siliculosus-1a_F_contig1332:2136..22951696318708.6207855-CDS-E-siliculosus-1a_F_contig1332:2136..2295Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1332 2137..2295 -
1622927852.7471285-CDS-E-siliculosus-1a_F_contig1332:2839..30361622927852.7471285-CDS-E-siliculosus-1a_F_contig1332:2839..3036Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1332 2840..3036 -
1696318708.6305783-CDS-E-siliculosus-1a_F_contig1332:2839..30361696318708.6305783-CDS-E-siliculosus-1a_F_contig1332:2839..3036Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1332 2840..3036 -
1622927852.7626333-CDS-E-siliculosus-1a_F_contig1332:4681..49391622927852.7626333-CDS-E-siliculosus-1a_F_contig1332:4681..4939Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1332 4682..4939 -
1696318708.6483996-CDS-E-siliculosus-1a_F_contig1332:4681..49391696318708.6483996-CDS-E-siliculosus-1a_F_contig1332:4681..4939Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1332 4682..4939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1332.2008.1

>prot_E-siliculosus-1a_F_contig1332.2008.1 ID=prot_E-siliculosus-1a_F_contig1332.2008.1|Name=mRNA_E-siliculosus-1a_F_contig1332.2008.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=317bp
MEATRKLSAADGSSGGTQEPPHATDAEEEERVQQLAAGELTSAASFGTGD
CDGYDASNRFRSNIESVEKPRQIVVLVLTIAGASYLGFAQNDSDPDANTR
AASMGVGFLFLVHCFLQCRDSLFARPHPGVWRIVHGVGMLYLFAVSVLLV
HPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELTASAVIGQLREVWFLA
HLVGWWCKMCLFRDWGVCWVLSVGFELLELSMGWLVPQFHECWWDSLIID
LLGANVLGMTLGLYTLRFLETRTYDWNSKEKSHELARSLVRGRAIRPASK
HRRSMYSIGVPVLLVIV
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mRNA from alignment at E-siliculosus-1a_F_contig1332:93..4939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1332.2008.1 ID=mRNA_E-siliculosus-1a_F_contig1332.2008.1|Name=mRNA_E-siliculosus-1a_F_contig1332.2008.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4847bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1332:93..4939- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAAGCAACCCGAAAACTAAGTGCCGCTGATGGCTCAAGCGGCGGTAC
CCAGGAACCTCCACATGCTACGGACGCAGAGGAAGAGGAACGCGTTCAGC
AGCTAGCCGCCGGCGAATTGACGTCGGCGGCCTCATTCGGTACGGGAGAC
TGCGATGGGTACGATGCATCAAACCGCTTTCGTTCGAATATTGAGAGCGT
GGAGAAGCCCAGACAGATCGTTGTCCTTGTGCTAACCATTGCCGGAGCGA
GCTACTTGGTGAGTAGAGAGGGGTAAGTGTGTGTGTTCTTTCTTGTGGAA
GAACTCAATACCTATCAACCTCGGGAGTATTTTTTTCAAATCAAACAGGG
TGGTTGCTGACGCTGTGAGGAGAGTGTTCGTCTCGTCCGGTGTGTGCACT
TTTCAAGCTTGGGTGTGCTTCATGCCATCGGATAGTGTCGGACCAACCCC
CATTACTTTTGAGAGAGGTGCTGCGTGGTTAGACGCTGTGTGTTGGCAGT
CGAGACGACTATTACTATATATATGCACACGTAGTTGTATGCTACTTCGA
TATACAGAGTTCTCTAAAAAGTTCTCACTTTGGAAACGTTACGAGCGGCC
GAACTTCGCGAAAAAGCAAGGTATGCAGAACGGTACTGCTGCTGCTGTAG
AAGGCGCTGTAGGCGTCAGCGGTTGAACAGGGGCGAGGGATACAGCTTTC
ACAAGCACCAGATATAAAGGCAGTTGTTGGAACAGCTACATTTTTCTCGA
GAGAATGAAGGTACATATAGTAAGCTCATACAACATATTGTAGCCTAGTC
TTGAGCAGCTTGGGCGAGCCAAATCGCCCACGAGGGGTAGACTAGACATG
TTTCAAGCACGCAAACAACCTTGACTTTCCCTCTTAGTGCGCTAAATAGA
GAGCAGCAGTCAAAGGCATCTACATACACGGACTACGATCGCCGACCCTC
TACAAGGCGAATGCCATAGATATACATAGGGGAGTTATATCTAATACAGT
AGAGTCTTAGAGATGGCACCGGGTGCGATCGTTTTTTTTTATGTTTGTTC
CTCGGGTTTATCGCACCCTGGTGCCATCTCTCCGACCTCGGTGCGGAAAT
GCTATTGAATAATTTCGTTTAGTTTTTTCAAGGCACCCCGGTGCAATCTC
TCCGACCGGTGCCATGCCCGACGAAATACACACAGGTGTTGCATGCAAGC
ACCTCGGTGCCATGTCCCCGACCGGTACCATAGTGTTGATACCAGTGTAG
GCAAACCCACGCACACACAGTCTTCTGCACATGCTATTGATCGTATAGAA
CGACACATCTCGGTACCGTTGTTGCTGGTTGAAAGCACACCGGTAACGGC
AACGTAGGCTGGTACGTAACAGCTTTCCATGCGGCGAAGTGGTCTTGTGT
TTGAAGGCGAGTTTGGCTATGGCGTGACAAGGATAACAACCGATGTGGTT
TCCATCTGAGGCACCGGTACGTACGGTATCAGGCTGTCTTCCGCTTTCGT
TTCGGTCTTCCTCTACGGACACCTGTACGTACGCAACAGTACAACAGAGT
CATGTCGTGTAAGGTGGGGTAGGGTGCGTCTTGTACCTTGTGTTTGCTTG
TGTACGGTTTGCAACTTAAACTCCAATTAAAGAACGAACATACAGGACAC
GAGTGCGCTCCGCTGACACCGTCCCCACGTGCAACAGGTACGCATATGTA
CGTCATTCCGGCAGCTGAAATGGAGCTCAATCTTGGATTTGGGGGTCGGT
GAGATCGCACCCGGTGCGATCTCACTTCTTCTAGAATGATGTCATTGTTT
TTGTTTCAAACGATTGCCTCCATTTTACCTTGTCTGAGCACTGCCGTGGT
GACCCCCCTCTACCCCCCCTTATCTTTCGGTGGTTCTTCTCCCACGCACA
AAGGGCTTCGCCCAGAACGACTCCGATCCGGACGCAAACACGCGCGCGGC
GTCGATGGGCGTCGGCTTTCTCTTCCTCGTGCACTGCTTCCTGCAGTGCC
GAGACTCTCTCTTCGCCCGGCCGCACCCGGGCGTCTGGCGGATCGTCCAC
GGGGTCGGCATGCTCTATCTCTTCGCGGTGTCGGTGTTGCTCGTCCACCC
GTGAGTCTTTTTCGAGCCTCGTGCTTCTTGGAACGGGGTTCGGCTCCTGT
CGATGTGTGTATGTGCTGCTTTGGCAGGCGAATCGCTGTAGAAGGAGCGT
GGATTGGTGCCAGCTCGCTTGCGCCCTGCTCTGTCGTTGATTTTGTTTTA
TGAGCAAAGAACCCCCTTGCTCTCTCAAACACACTCCAAACACACGTGTT
TTTCGTGATGATGCTTTTTCAGGTTCTTGTACGTTTGTGATGGCGTGGTT
GCTAGCAATATGAGAATACGTGGGTTGCAGGATAACTTCTACGCAGTTTT
AAGAAACTGTTATCGCCACCAGCGAATGTCCACCAACAGCTCATTGTTCA
ATCCTCAGGGGCCACCAGTTTCTGGGGGCCCAAATTTTGGTACGACTGTC
AAGTGTCAATATCAACGTTTCTATCGTCAACGTTTCTGTCCGCGACGGCC
TGTCTGCCCGTCTCTGTCCTGCTTGTGTTTTCTTTTCTCGTGCTGTCGTG
CTCCGCCGCTCCCCGCTTTCCCCTCTTCGATGAAAAATATGCAGCAAGGA
CGAAGCGCAGCGGTTACTGGCCATCTTTATCCCTGATGTGAAAGGGTACA
CGCTGTCCCGCTTTGAGGCCGGCTCCCTCGAGTGCGAGCTCACGGCGAGC
GCCGTCATTGGCCAGCTGCGGGAGGTTTGGTTCCTGGCGCACCTCGTGGG
CTGGTGAGTCCCGTTTCCTAGTATACCACCTTGAGTGTACGCCCCCCCCC
CCCGTCCCGTGGCAACCAACGTATATGACGCAAGAAAACTCTCCTCGGTG
GTGACGTTTTGGCTTCTGAAGTACACCGGGTGTGTTGTTGTGCGGGGGAG
GTGGTTATATATTTTCCACCTTTAACTTTTGATTTGATATTGTAGGTTTT
GGGTTCATGTTAACCCGTACAAGTATTGCCACCGGGTGTGGTTTTGTGTA
TCGGGGGTGTTGTTTTACGTGCGTGTGTTATCTTGTGTCGTTTGCCGTAG
ACTAAATACTGCCCTGACCAGCCAGCGCTGCCTATTTTTGCGATATGCCT
ATTGTTGCGAGTCCCCACCCACTCCCTTCCTCCACCCACTCCCTTCCCAC
GAGCACGGTGTAGCATGTCAGACTACGGCCCGTTGCTTGTTCCGAAGCTT
ATTATTTGCGGGCGGAGGGTGAAAACCACCGTACCCCCCGCCTCCCACCT
CACCAATATGGAAATATTGCGGGCGGCTAGTATGGCACGACCACGAGCTC
GCGGGCGGTGTGGGTGGGGGGGGTCTGGTTTCCGGTGCGTTTCGCGGGCA
CAGGTACTCGCGTGCGGAAGGAGTTACGATGGCCGGTATGTACGTCGCAC
TGGCACGCAAATCAGCAGCACTGGCACGCGCAGCAGCGGCGGTGGCACGA
CGACGAGCCAGCCAACGTGCTCTGGCCACGCCCCCCGACTTTGCGACGCG
GGAGAGCGAGCGGCCGCTTCTTTTTCATGGCGATGCGCGCTCCGCGATGT
TATTGCGACCACCACTTCCCCACCCAGCCCTGACGCATCTGCATGACGGC
CCGATTCCGCATTGCCTCGAATGATGCCACCCCCCGCTCGGGGGAATGTT
ATTTGCGGGGTTACGGACGTCCTTACGCGCGCTCGGCCAGTCTGACCGGT
GTACGGAAACCCAGAAGGCCGGAAGTGACTGCACTTGCACGTTATCACTC
CGGCCTTGGACCCCGCGCGATCGGTTAAGGTGTTGGTTCACCCCATCTTT
TGATTTGTCGTGGGATGTGAAGGTGCCCAGAAACGACATACCAAGCGTTT
TCCCCCTCCCTCGCCCTGCGGCAATCGCAGGTGGTGCAAGATGTGCCTCT
TCCGCGACTGGGGCGTGTGCTGGGTCCTATCGGTCGGCTTCGAGCTCCTG
GAGCTATCGATGGGCTGGCTGGTGCCGCAGGTGAGGCAGACGATGAAGGC
AAGGAGTTGTGGCACGGGAAGGAGACGGAGGGGGGGCGGCAGATGATGGG
GCGTATCCACTTGTCTGGTTTTCTTCGGTCCGGCAAGGAGGAGTGGAGAG
CAACGTTGCCATTTTTTCGGCGTTCGTCGTGCGGCCTTCGATTACGCCTC
CTTTATCGGGAAGAAGCACCGGCTTGGTGCGTCTCGCGGGCGGGGGGGGC
TAGCGGGTCGGTAGATGGGTCTATCCATCAGCATGTCTTTGTCTGCCTGC
CCACTCCCGATATTTTTCGACACGGGCAGAATTGTGTACAGCTGCCCCGC
CCCATGTGTGTTCCTTGAACAGGCGGGCTCGCGTTCTTGTTTGTGTCGTC
GTCAAATCATCTCCATCGTCCGTGAAATGTTTTCGGCTTCACTTCGCTCG
CGTGCGTCGCTCGGCCGTGCGTTTATGTCAAAGACGACCCCCCCCCAGCA
CGCCGACACCCCTCCTTCTCCTGGTCTCTTCACACACCCCACTCTCTCGC
TTTTTTGTTTCCTTCATCGCTGCAAAATCCGCATACCACGGTATCGCGCA
TCTTGTTCAGTTCCACGAGTGCTGGTGGGACTCCCTGATCATCGACCTGC
TGGGCGCAAACGTTCTCGGCATGACCCTGGGGCTCTACACGCTCAGGTTC
CTGGAGACGAGGACCTACGACTGGAACAGCAAGGAAAAGTCGCACGAGCT
GGCGAGATCTCTGGTGAGGGGACGAGCTATTAGGCCAGCAAGCAAGCACC
GCCGTAGTATGTATAGCATTGGCGTGCCGGTATTGTTGGTTATTGTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1332:93..4939-

>mRNA_E-siliculosus-1a_F_contig1332.2008.1 ID=mRNA_E-siliculosus-1a_F_contig1332.2008.1|Name=mRNA_E-siliculosus-1a_F_contig1332.2008.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1902bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1332:93..4939- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAAGCAACCCGAAAACTAAGTGCCGCTGATGGCTCAAGCGGCGGTAC
CCAGGAACCTCCACATGCTACGGACGCAGAGGAAGAGGAACGCGTTCAGC
AGCTAGCCGCCGGCGAATTGACGTCGGCGGCCTCATTCGGTACGGGAGAC
TGCGATGGGTACGATGCATCAAACCGCTTTCGTTCGAATATTGAGAGCGT
GGAGAAGCCCAGACAGATCGTTGTCCTTGTGCTAACCATTGCCGGAGCGA
GCTACTTGATGGAAGCAACCCGAAAACTAAGTGCCGCTGATGGCTCAAGC
GGCGGTACCCAGGAACCTCCACATGCTACGGACGCAGAGGAAGAGGAACG
CGTTCAGCAGCTAGCCGCCGGCGAATTGACGTCGGCGGCCTCATTCGGTA
CGGGAGACTGCGATGGGTACGATGCATCAAACCGCTTTCGTTCGAATATT
GAGAGCGTGGAGAAGCCCAGACAGATCGTTGTCCTTGTGCTAACCATTGC
CGGAGCGAGCTACTTGGGCTTCGCCCAGAACGACTCCGATCCGGACGCAA
ACACGCGCGCGGCGTCGATGGGCGTCGGCTTTCTCTTCCTCGTGCACTGC
TTCCTGCAGTGCCGAGACTCTCTCTTCGCCCGGCCGCACCCGGGCGTCTG
GCGGATCGTCCACGGGGTCGGCATGCTCTATCTCTTCGCGGTGTCGGTGT
TGCTCGTCCACCCGGCTTCGCCCAGAACGACTCCGATCCGGACGCAAACA
CGCGCGCGGCGTCGATGGGCGTCGGCTTTCTCTTCCTCGTGCACTGCTTC
CTGCAGTGCCGAGACTCTCTCTTCGCCCGGCCGCACCCGGGCGTCTGGCG
GATCGTCCACGGGGTCGGCATGCTCTATCTCTTCGCGGTGTCGGTGTTGC
TCGTCCACCCCAAGGACGAAGCGCAGCGGTTACTGGCCATCTTTATCCCT
GATGTGAAAGGGTACACGCTGTCCCGCTTTGAGGCCGGCTCCCTCGAGTG
CGAGCTCACGGCGAGCGCCGTCATTGGCCAGCTGCGGGAGGTTTGGTTCC
TGGCGCACCTCGTGGGCTGCAAGGACGAAGCGCAGCGGTTACTGGCCATC
TTTATCCCTGATGTGAAAGGGTACACGCTGTCCCGCTTTGAGGCCGGCTC
CCTCGAGTGCGAGCTCACGGCGAGCGCCGTCATTGGCCAGCTGCGGGAGG
TTTGGTTCCTGGCGCACCTCGTGGGCTGGTGGTGCAAGATGTGCCTCTTC
CGCGACTGGGGCGTGTGCTGGGTCCTATCGGTCGGCTTCGAGCTCCTGGA
GCTATCGATGGGCTGGCTGGTGCCGCAGGTGGTGCAAGATGTGCCTCTTC
CGCGACTGGGGCGTGTGCTGGGTCCTATCGGTCGGCTTCGAGCTCCTGGA
GCTATCGATGGGCTGGCTGGTGCCGCAGTTCCACGAGTGCTGGTGGGACT
CCCTGATCATCGACCTGCTGGGCGCAAACGTTCTCGGCATGACCCTGGGG
CTCTACACGCTCAGGTTCCTGGAGACGAGGACCTACGACTGGAACAGCAA
GGAAAAGTCGCACGAGCTGGCGAGATCTCTGGTGAGGGGACGAGCTATTA
GGCCAGCAAGCAAGCACCGCCGTAGTATGTATAGCATTGGCGTGCCGGTA
TTGTTGGTTATTGTCTTCCACGAGTGCTGGTGGGACTCCCTGATCATCGA
CCTGCTGGGCGCAAACGTTCTCGGCATGACCCTGGGGCTCTACACGCTCA
GGTTCCTGGAGACGAGGACCTACGACTGGAACAGCAAGGAAAAGTCGCAC
GAGCTGGCGAGATCTCTGGTGAGGGGACGAGCTATTAGGCCAGCAAGCAA
GCACCGCCGTAGTATGTATAGCATTGGCGTGCCGGTATTGTTGGTTATTG
TC
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