mRNA_E-siliculosus-1a_F_contig1330.2002.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1330.2002.1
Unique NamemRNA_E-siliculosus-1a_F_contig1330.2002.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1330.2002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1330contigE-siliculosus-1a_F_contig1330:10095..16396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size492
Model size495
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927851.446287-CDS-E-siliculosus-1a_F_contig1330:10094..102081622927851.446287-CDS-E-siliculosus-1a_F_contig1330:10094..10208Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1330 10095..10208 +
1696318708.1388042-CDS-E-siliculosus-1a_F_contig1330:10094..102081696318708.1388042-CDS-E-siliculosus-1a_F_contig1330:10094..10208Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1330 10095..10208 +
1622927851.465339-CDS-E-siliculosus-1a_F_contig1330:16017..163951622927851.465339-CDS-E-siliculosus-1a_F_contig1330:16017..16395Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1330 16018..16395 +
1696318708.148797-CDS-E-siliculosus-1a_F_contig1330:16017..163951696318708.148797-CDS-E-siliculosus-1a_F_contig1330:16017..16395Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1330 16018..16395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1330.2002.1prot_E-siliculosus-1a_F_contig1330.2002.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1330 10095..16395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1330.2002.1

>prot_E-siliculosus-1a_F_contig1330.2002.1 ID=prot_E-siliculosus-1a_F_contig1330.2002.1|Name=mRNA_E-siliculosus-1a_F_contig1330.2002.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=164bp
CFHQAQQKRSEKGIPFRPENVITRAYDTAGGERSPQEKELTADMDNAGQS
PGGPAAIDTMDGGQDETSRFKWPSVSMWHTIIISLLEASLTAINADNEGT
FTFDGSFANRVFGASVVMETTGLLFGVVVMALGALKCKGINEQRLGSGGS
PILMIWEAWDSRRV
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mRNA from alignment at E-siliculosus-1a_F_contig1330:10095..16396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1330.2002.1 ID=mRNA_E-siliculosus-1a_F_contig1330.2002.1|Name=mRNA_E-siliculosus-1a_F_contig1330.2002.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6302bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1330:10095..16396+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTTTTCATCAGGCGCAACAAAAAAGGAGCGAGAAAGGGATTCCATTCCG
CCCAGAAAACGTCATTACACGTGCATACGACACCGCGGGGGGAGAAAGAT
CTCCCCAAGAGAAGGTATGTAGGTACGCACCGCGGAGGGATTTTCTCCGG
TTTCTCCCAGGTTCTCAAGTGTTTCGTTCCGATTTCGAAGGACAGACCGC
GTGTGTGAGTCTGAAACAAGAAATTTGGTGACGGTGCATAGCTAGCTGCA
GAGGACTGCTTGCTCTCCGCGGAGAGCAAAAGCAGGGACGACGAGAGAGA
GTGCTTGCGACATCAGCAACCACACCGCCCCCCGAAGGCGCTTTTATTTT
CGTGGTCTGGTCATTGAGGGCGCCATGCATTGGGTACAAAGCTATCATGA
GCTACAACAGTCAGTGCGTGCTGGCTCTCCGCCAACGCCAAACGAGTCAT
GTGCGTGCTGCTACGGAGCGCGTAGCGTTTCCGGTTTCCGACCTACAGTA
GTAGTGTACAGATCCGAGCTGCGTGGCACCTCCTTCACAGGGAGAGTGCC
CTGCTGAGAAACCAACGCTTGCAAGGCTCGCACAGCAAAACCTGGCGAGT
GTGGAGGAACGTTTTCTGAGGGGGGTCAGAATGAAGAAGCGGTCGTATGC
GTGAGCAGTGGACGAGTAGCCCGCACCACAGACACCGAACGGGCTCGTAG
TTGTATTGTTTCGTGATTACGACGACTAGTGATGCGCACTCCCCCCCAGC
GTCAATGAACCGAGGTGCTTATAAGCGGCATTGCAGACTGTTGTTGCTGT
CTGCGTGCCCGCCCTCCGTCATCGAAAAAGTTTCACTTCAACAATCTTGA
TACTTGCCTCCTCCTGTCCTCCCCCTCCTCCTCCTATGTACATAGAGATA
CCAAGAGTAGAATTCAAAAGGCGGCCGCGAGACTCGAGACAAAGTTTAGA
AGTATACAGCAGTCGTAGGTGTGGTGTACTTGATGGGCGACGGGTTCATC
AGGTTCCATGGATGTGCTGTCGTTACCCAACACCCACAACTACATGTGTA
TGTAGAACGCGGCCAAGGAAAAATTTCCCGCACACCTACGCGACGACACG
CCCCCCTCCCCGGGACAATCTCCCACACTACCGACACTACCGACAGTTTT
GTCAAGTGCCCCAGGGCGCCCCATGGGGCACCGATGGACTGCCCATGGGC
AGTCCATGAAGTGCCCATCATGGGTTGCCCATGAGCATGCTCATCATGGG
CTGCCCATGGGCAGCCCATGGGCAATGGGCAGCCCATGGGCAGCCCATGA
TTTTGACAAAACTGGCGGCCGATTCAGAAATTTTTTTGACAGTTTTGTTC
TGGCGGTCGATTCCTCTCCAGCGCCCTCTCCCCGTTCCGCATTCCGAGCA
CGCGGCTCAGCCGCGTGCTCCGCCCAGTCGCGGCCGCTAGGCCGTGCTCT
GGCCGTGGGTGAGGGTTAGGGTTAGGGTTAGGGTCAGGGTAGATGTGGGG
TGAGCAACCTAGCCTTGCTCGCGTGAAGAACCTAGCCTTGCTACGTTCAA
CATCGATTAGTCCTAAAGAGTTACTATCAATGTGTAACCAAGGCTCCCAC
GATGGGCTGCCCATGGTAAGCTGCCCAGGAGCTGCATGAGCTACCCACGT
TGGGTTGCTCATGGTGGGCCGCTCATGGGCAGCCCACCATGCCCATGGGC
CGCCCGTCATGGGCATTTTGGGCATGCCCATGGCCATGCACACAAGTGAC
CCATGGGTCAGCCGTGGGCTTTTGCTCATGGGCACGCCCATGGGCATTGC
CCACGGGCATGCCCATGGGGCGCCCATGGGGCACCCATGGGGCACCCATG
GAGCACCCATGAGCCTTTTGTTGCCCATGGGCGGCCTATGGGGCACCCAT
GGGCCGTTTGGGAAAACTGTAGAAAGTGTTGGAGACCCGCCCGGGAGGGG
TGCGATTTTTTGTTTTTTATGGGACATTTTTTGTACAGGCTTTGTTCTTT
CTCCCTCTCCATTGCGCGTGCTTGTGTGTGCTTACGTGCACAAAGGACCT
TGATACCAGGTACTCCTGAAGTAGGTGTTTGATAGGCTTGAGACAATCAT
CAATGGTTCGTGTGTACATCCGGCGCCGGAAGAAGATTGCTACTTCGTTT
GATAGCTGTGATGGGCCGGGGACACTTCTGGTTGGTTTTCAAGTCTTGAG
TCTTGAAGTACAGTGCTTGGGGACAACCCGCTAAGCTAAACTAACTCAGA
ACTTCTCACTTAATGCTTCTGCGACAAGCCCGCGAAATTGGACCTTGGGC
GAATATGGCGAAATACCGCAAACAATCGACACACCAGAAGCAAAGGACAT
ATTAATACCAGCGTCGAAACGTCATCAATCCAAGCTTTTAGTACTCAAAC
CGGCAACGTAACGGAGATGGGATGTCGATGAGCATACGGCGGTGGCATCA
CCTTCTTCTTCGCCACGTGCAACACCCGTCCACAATTGTTTGCAATTTAT
TTGCCATGCGTTTGTGTACACTTATCCGTTCACTCCCCCAGGCCCCTCCG
CCTAACCTCCGTCAACAAAGAAGGCTAAGCCGCTGTTTCTTCGAACGCTT
TTGCGTCGAGCGCCTTCGCCCTCCCTCCTCCTCCTCCTCCCCCCCCCCCC
CCCCCACCCACCCACCCACCCACCCCTACTCCTCCTCTTCTTCCTCCTCT
CCTTCCCTGTACGCCGCCTTCTCCTGGAAGTCCTCCTCCGACTCGGAGCT
CTCGTCTTCAACCGAGTCCCCCTTTCTCCGCTGACGACTCGTCTAAGAGT
GACTCGTCGTCTGTACTTTCACCCCCCCGCCCCCGGCGAGACCTTACGGC
GTGCTACGGGGGCTTTGCCAGCTGACTCTTCTGGTGTAGGACCTTTGTCC
GTGTGTGACGGGGGTTCTGACAGCCGCCCCATCTTGTCTCCCAAAGGACA
TTGTGCTCATCGTGACCACTTCTTCTCCCCAAGCTCGCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCCTCTGCTACGGACGGTACCGCGGC
TGCGGTGCACGCAAGCTCGCCCAAAGGGGCTACGTAGATCGCACTACCCC
CATGCATGAAATGTGCCCCCTTTATATATAGGATTTAGTATGGGCTTGTT
TATGTAGGACATTTTATGGCGTTGGGGGGGGCCTTCGTACCCCCCCCCCC
CCCCCGGAGAGGTCCCAAAAAACGATTTGTCGGGTAGGTGTCGAAAAACA
TTTTTTGTGCGCCCTTGACGCGGCAGATGCAAACATTGTCCACGTGCACC
ACCGCTAGCCGTGCTTGTCAACTTGCTCTGTCATCGATCTCCTGTTTGTG
AGCTGCTCGATCGGGTGTAAGCACGCCCATCTCTTTGTGTTGCCCGGTGC
TCGCTGTACTCATCGCTGCTCGCTGATGCTGAGAGATGTGTGTATGTATG
CATATGTACATCTCTCTCCCTCCCCCCCCTCCCCCCTCTCTCTCTCTCTC
TCGAGATTTATCGTGAAGCAACCAACCAACCAAGCGTTGTTCTCTCCTCC
TCTCGCTTCCGCCGTTAGCTAAGAGCAGCAACAGCATACATTGTATTGGC
CACACCCTCCCGAATCCCTACTCTGTGATGAGATTTGACCCCTTCAATCA
ATCACTCTCTTGTTCGACCACAGGTAGGTGCAGGGTTGTTGTTGCTTTCC
GTTGTTGTATTTCCCTTGATTATCTTTTTTCTAAGCCAACTCACACGGAT
CCTACGCACACTGTGAACAGAAAATGTCCGATCTCTTGCATGACGCCACG
TCATCGCATCTGACGACGCCAAATAACCATGGTCAAGCACGCTCACATGT
CTACCTCCAAATACCATAACACTAGCCCACCCTGAGTAGTCGTAGATAGA
TGATGCAGATACAAGATACGACAACACAAAACCCTCAACCGCACCTCCCT
CTCCGTTAACCAAACGAAAGGAGCGGAACCAAGAGAGAGAAAAACACAGG
AGTCGGGGCGTCAAAGTCGGCGGAAAAAAATCGGGGAAAAGGCTACGCGG
GGTTCGAAAAATTACCAAACCATCCGAAACCGAGTCCAAATACCGCAACA
CCTCCCTGCTGGCGTGTGTCTCCCTTCACCCTTGTCCATCTCTCTGCGAC
AACAACTTACCCAGCCGGTTGCCAGCAGTGTCAGACAGGGAGAGAACCTG
GTTCGAATGACACCTCCTCCTACGTCGCAGGCACGCGCGAATCCAACTTA
TATGTTCGGCACACGTGCGTTCGTTCTTTACTCGATACACGAAGCACGGA
TTGAGCGGGAAGCAGTTGGGACAGCTCGGGCAAATTCTACTTGTTGTGCA
CAAGTCTTACATTCATGCAGTTTGGGTGCCAGTCTGCTGGGCTATTATCG
TCACAGACAGACAGACAGACAGACAAGACAGACACGCAAACGCTCTTTTT
TTGCAAACCAAAAAGCACCCCTATGGGCCGCTCTAAAAAACTATACTAGG
CGAGCCCTTACCAATAATTCCCACATATTATACAGGAGGCATATTTCATG
CACGGGGGTGGTAGTAGTACTCCACGTAACCCCCTTGCGTGTACCGCAAG
TGTACCGCAACCGACCGTAGCGTACGATAGCAGAGTTGCCCTAACCCAAA
CGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAAGGGGGTGGGGGGA
AGGGAGGGCGAAGGCGCTCGACGAAAAGCGCTCGAAGAAGCAGCAGTTCA
GTCTTGTTGAGGGAGGTGGAGGGGCTTGGGGAAGAGGTGAATAGGTACAA
TGCGCGTCATACTGTATTTCTATTGTGTACGGGTGTTGCTCGTGGCGAAG
GTGATGCCACCGAAGTAGGCTCATCGCCAGCCCATCTCCGACTTTTGGCC
GGCTTGAGTAAGCTTGGATTGATGATGTTTCGACGCATGGTTAGGTGTCC
TTTGGTCATGTTGTGTCGTTTGTTTGTATTGTGTGACTTTTCGCCATATT
CGCCCAAGGTCAAATTTCTTGGACCTGTCGCAGAAGCATTGAGAAGTTCT
GAGCTACTTTTTAGCTTGGGGTGTTGTCCCCACGCATTTTACTTCAGGTC
TTCAAAACCAACTATACGTGTCCCCAGCCCATCACAGTTTTTTTTTCTTC
CGGCGGACGTACATACCATTTTCTCAAACTTATCAACTACTACTGCTGTA
ACAAGGCCCTTTGTGCACGTGCCGTAAACACAAGCACACGCAAGCACACG
CAATCGAGAGGGAGGAAAGCAAGAAAGCCTGTACAAAAATGTACCACGAA
AAAGATTTTTTTTTGCGGCCCTCCCGGGGGGGGGGAGGGGATAGGTGTGC
GGGAGATTACTTTTGGTGTACGCCCTTGGTTTTACGCTCCTTTTCCTTTC
GAGTTCAAACGACGCAGTTGCCTACAAAGATGTGCGAGAGAGACTTCTCC
TGGACCGTTGTGTATATTCGCGAATAGGTTTTCCGCGTCCATTCCGCGTC
CATTCATCGCCCACGTTTGTTTCAAGAAACCAATTGGACCAGGATTCGTG
CAACGTACCGTCCCAATCGGTCCATTCTATTTTCAAGTCGTTGTTCCGAT
TTGATCACGATTCGAAATCGGAAGCACAATTTCATTTCCGTTCACTAGGA
AGATATAAATCGCAGAACTTCGGGTGGTCGGAACCTTCGAACCTTCGTCG
GCCTGGCTTTGGTCCTCCACGCCCGCTTACCGCCTTCAGACTTCAGACCC
CAAAGCTATTTCACCCCAAGTCCACACCACGCTGTTGGCACACGAACATG
GACAAAGAGTAAAGGATAAAGCCAGGCATTCGGCTAACTAGCTTTTGGAG
CAGGTCTTACCCATTTGTGCATGAGAGACCTTTGCCTAAAGCCCGTAGCT
AAATCGCCACAAACTCTGGCCAGGAACTAACTGCTGACATGGACAACGCT
GGTCAATCACCTGGAGGTCCCGCGGCGATCGACACCATGGACGGTGGACA
AGACGAGACCTCCCGTTTCAAGTGGCCATCAGTTTCGATGTGGCACACAA
TCATCATTAGTCTTCTCGAGGCGAGCCTGACTGCAATTAACGCTGACAAC
GAGGGCACGTTCACGTTTGATGGTTCGTTCGCGAATCGGGTATTTGGCGC
ATCCGTGGTGATGGAGACTACCGGCCTCCTGTTCGGGGTGGTTGTTATGG
CTTTGGGGGCACTCAAGTGCAAGGGCATCAACGAACAAAGACTGGGTAGC
GGGGGTTCGCCAATATTGATGATCTGGGAAGCATGGGACTCCAGGAGGGT
GG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1330:10095..16396+

>mRNA_E-siliculosus-1a_F_contig1330.2002.1 ID=mRNA_E-siliculosus-1a_F_contig1330.2002.1|Name=mRNA_E-siliculosus-1a_F_contig1330.2002.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1330:10095..16396+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTTTTCATCAGGCGCAACAAAAAAGGAGCGAGAAAGGGATTCCATTCCG
CCCAGAAAACGTCATTACACGTGCATACGACACCGCGGGGGGAGAAAGAT
CTCCCCAAGAGAAGTGTTTTCATCAGGCGCAACAAAAAAGGAGCGAGAAA
GGGATTCCATTCCGCCCAGAAAACGTCATTACACGTGCATACGACACCGC
GGGGGGAGAAAGATCTCCCCAAGAGAAGGAACTAACTGCTGACATGGACA
ACGCTGGTCAATCACCTGGAGGTCCCGCGGCGATCGACACCATGGACGGT
GGACAAGACGAGACCTCCCGTTTCAAGTGGCCATCAGTTTCGATGTGGCA
CACAATCATCATTAGTCTTCTCGAGGCGAGCCTGACTGCAATTAACGCTG
ACAACGAGGGCACGTTCACGTTTGATGGTTCGTTCGCGAATCGGGTATTT
GGCGCATCCGTGGTGATGGAGACTACCGGCCTCCTGTTCGGGGTGGTTGT
TATGGCTTTGGGGGCACTCAAGTGCAAGGGCATCAACGAACAAAGACTGG
GTAGCGGGGGTTCGCCAATATTGATGATCTGGGAAGCATGGGACTCCAGG
AGGGTGGAACTAACTGCTGACATGGACAACGCTGGTCAATCACCTGGAGG
TCCCGCGGCGATCGACACCATGGACGGTGGACAAGACGAGACCTCCCGTT
TCAAGTGGCCATCAGTTTCGATGTGGCACACAATCATCATTAGTCTTCTC
GAGGCGAGCCTGACTGCAATTAACGCTGACAACGAGGGCACGTTCACGTT
TGATGGTTCGTTCGCGAATCGGGTATTTGGCGCATCCGTGGTGATGGAGA
CTACCGGCCTCCTGTTCGGGGTGGTTGTTATGGCTTTGGGGGCACTCAAG
TGCAAGGGCATCAACGAACAAAGACTGGGTAGCGGGGGTTCGCCAATATT
GATGATCTGGGAAGCATGGGACTCCAGGAGGGTG
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