mRNA_E-siliculosus-1a_F_contig1330.2001.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1330.2001.1
Unique NamemRNA_E-siliculosus-1a_F_contig1330.2001.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1330.2001.1 vs. uniprot
Match: D7G973_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G973_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.350e-22
Identity = 68/186 (36.56%), Postives = 80/186 (43.01%), Query Frame = 1 
Query:    7 LLEFPSGFKCTWYGLPHRIQFTVLILVSTL*AVSMLFAMASIEVLLFR*EQHFVVSYIEGCFCLCGSLIKDLAASCSWGRILT*SNCWSRRTEPFLKPAGLVLRRCLTDAGAPLRC*SAI*QA*KGFPRSPLPYTTAVFTEGRGGGRPKNAEGTLCHQRKLDACSTKGSPRAPLPLCHHRLDGKKK 564
            LLEFPSGFKCTWYGLPH +QFT+LIL+  L        +  +  L  R E+                                               AGL                               P+ TA   E + GGRP++ EG +C QRKLDACSTKGSPRAPLPL HHRLDGK+K
Sbjct:   45 LLEFPSGFKCTWYGLPHPVQFTILILMPAL--------LYGVNRLFDRLEKA--------------------------------------------SHAGLC------------------------------PHATAACVEEKEGGRPEHVEGAVC-QRKLDACSTKGSPRAPLPLRHHRLDGKEK 147
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BLAST of mRNA_E-siliculosus-1a_F_contig1330.2001.1 vs. uniprot
Match: A0A6H5J7H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7H2_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 7.130e-20
Identity = 65/184 (35.33%), Postives = 73/184 (39.67%), Query Frame = 1 
Query:    7 LLEFPSGFKCTWYGLPHRIQFTVLILVSTL*AVSMLFAMASIEVLLFR*EQHFVVSYIEGCFCLCGSLIKDLAASCSWGRILT*SNCWSRRTEPFLKPAGLVLRRCLTDAGAPLRC*SAI*QA*KGFPRSPLPYTTAVFTEGRGGGRPKNAEGTLCHQRKLDACSTKGSPRAPLPLCHHRLDGK 558
            LL+FPSGFKCTWYGLPH +QF VLIL                                                               R       PA L     L D               K       PYTTA + + R GGRP+  EGTLC QRKL AC+ KG+PRAPLPL HHRL+GK
Sbjct:    9 LLDFPSGFKCTWYGLPHPVQFAVLILAL-------------------------------------------------------------RSARAPQMPALLYGVNRLFDTLE------------KASHNYLCPYTTAAYMDAREGGRPEYVEGTLC-QRKLVACANKGNPRAPLPLHHHRLEGK 118
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BLAST of mRNA_E-siliculosus-1a_F_contig1330.2001.1 vs. uniprot
Match: D7G963_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G963_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.550e-5
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    7 LLEFPSGFKCTWYGLPHRIQFTVLILVSTL 96
            LLEF S FKCTWYGLPH +QF VLIL+  L
Sbjct:    9 LLEFSSRFKCTWYGLPHPVQFMVLILMPAL 38
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1330.2001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G973_ECTSI1.350e-2236.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7H2_9PHAE7.130e-2035.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G963_ECTSI1.550e-573.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1330contigE-siliculosus-1a_F_contig1330:7847..8410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size219
Model size317
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1330.2001.1prot_E-siliculosus-1a_F_contig1330.2001.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1330 7861..8079 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927851.5915291-UTR-E-siliculosus-1a_F_contig1330:7846..78601622927851.5915291-UTR-E-siliculosus-1a_F_contig1330:7846..7860Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1330 7847..7860 -
1696318708.185212-UTR-E-siliculosus-1a_F_contig1330:7846..78601696318708.185212-UTR-E-siliculosus-1a_F_contig1330:7846..7860Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1330 7847..7860 -
1622927851.6245399-UTR-E-siliculosus-1a_F_contig1330:8326..84101622927851.6245399-UTR-E-siliculosus-1a_F_contig1330:8326..8410Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1330 8327..8410 -
1696318708.2048814-UTR-E-siliculosus-1a_F_contig1330:8326..84101696318708.2048814-UTR-E-siliculosus-1a_F_contig1330:8326..8410Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1330 8327..8410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927851.6088417-CDS-E-siliculosus-1a_F_contig1330:7860..80791622927851.6088417-CDS-E-siliculosus-1a_F_contig1330:7860..8079Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1330 7861..8079 -
1696318708.1951103-CDS-E-siliculosus-1a_F_contig1330:7860..80791696318708.1951103-CDS-E-siliculosus-1a_F_contig1330:7860..8079Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1330 7861..8079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1330.2001.1

>prot_E-siliculosus-1a_F_contig1330.2001.1 ID=prot_E-siliculosus-1a_F_contig1330.2001.1|Name=mRNA_E-siliculosus-1a_F_contig1330.2001.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=73bp
MPALLYGVNRLFDKLEKDSHAHLCRTPPPFSRKGEEAGVPKMPKAHYVIN
GSWTLALQREVHARLCPYVTTV*
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mRNA from alignment at E-siliculosus-1a_F_contig1330:7847..8410-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1330.2001.1 ID=mRNA_E-siliculosus-1a_F_contig1330.2001.1|Name=mRNA_E-siliculosus-1a_F_contig1330.2001.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=564bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1330:7847..8410- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGGGCTCCTTGAGTTTCCGTCGGGGTTCAAGTGCACGTGGTACGGGCT
GCCGCACCGTATCCAGTTCACGGTGTTGATTCTGGTAAGTACGCTCTGAG
CTGTCTCCATGCTTTTCGCCATGGCTAGCATTGAAGTTCTGCTTTTCCGT
TGAGAACAACACTTCGTTGTTAGCTATATCGAGGGTTGCTTCTGCCTCTG
CGGGTCTTTGATAAAAGACCTAGCGGCGAGCTGTTCTTGGGGGCGTATTC
TAACGTGATCAAACTGTTGGTCAAGAAGAACCGAGCCATTTTTGAAGCCG
GCAGGCCTTGTGCTCCGCCGGTGCCTCACAGATGCCGGCGCTCCTCTACG
GTGTTAATCGGCTATTTGACAAGCTTGAAAAGGATTCCCACGCTCACCTT
TGCCGTACACCACCGCCGTTTTCACGGAAGGGAGAGGAGGCGGGCGTCCC
AAAAATGCCGAAGGCACATTATGTCATCAACGGAAGCTGGACGCTTGCTC
TACAAAGGGAAGTCCACGCGCGCCTCTGCCCCTATGTCACCACCGTTTAG
ATGGAAAAAAGAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1330:7847..8410-

>mRNA_E-siliculosus-1a_F_contig1330.2001.1 ID=mRNA_E-siliculosus-1a_F_contig1330.2001.1|Name=mRNA_E-siliculosus-1a_F_contig1330.2001.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1330:7847..8410- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGGCGCTCCTCTACGGTGTTAATCGGCTATTTGACAAGCTTGAAAA
GGATTCCCACGCTCACCTTTGCCGTACACCACCGCCGTTTTCACGGAAGG
GAGAGGAGGCGGGCGTCCCAAAAATGCCGAAGGCACATTATGTCATCAAC
GGAAGCTGGACGCTTGCTCTACAAAGGGAAGTCCACGCGCGCCTCTGCCC
CTATGTCACCACCGTTTAGATGCCGGCGCTCCTCTACGGTGTTAATCGGC
TATTTGACAAGCTTGAAAAGGATTCCCACGCTCACCTTTGCCGTACACCA
CCGCCGTTTTCACGGAAGGGAGAGGAGGCGGGCGTCCCAAAAATGCCGAA
GGCACATTATGTCATCAACGGAAGCTGGACGCTTGCTCTACAAAGGGAAG
TCCACGCGCGCCTCTGCCCCTATGTCACCACCGTTTAG
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