mRNA_E-siliculosus-1a_F_contig1330.2000.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1330.2000.1
Unique NamemRNA_E-siliculosus-1a_F_contig1330.2000.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1330.2000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1330contigE-siliculosus-1a_F_contig1330:2420..2654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size144
Model size235
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1330.2000.1prot_E-siliculosus-1a_F_contig1330.2000.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1330 2437..2580 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927851.514349-UTR-E-siliculosus-1a_F_contig1330:2419..24361622927851.514349-UTR-E-siliculosus-1a_F_contig1330:2419..2436Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1330 2420..2436 +
1696318708.1574004-UTR-E-siliculosus-1a_F_contig1330:2419..24361696318708.1574004-UTR-E-siliculosus-1a_F_contig1330:2419..2436Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1330 2420..2436 +
1622927851.5544496-UTR-E-siliculosus-1a_F_contig1330:2580..26541622927851.5544496-UTR-E-siliculosus-1a_F_contig1330:2580..2654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1330 2581..2654 +
1696318708.1752834-UTR-E-siliculosus-1a_F_contig1330:2580..26541696318708.1752834-UTR-E-siliculosus-1a_F_contig1330:2580..2654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1330 2581..2654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927851.5305305-CDS-E-siliculosus-1a_F_contig1330:2436..25801622927851.5305305-CDS-E-siliculosus-1a_F_contig1330:2436..2580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1330 2437..2580 +
1696318708.1659353-CDS-E-siliculosus-1a_F_contig1330:2436..25801696318708.1659353-CDS-E-siliculosus-1a_F_contig1330:2436..2580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1330 2437..2580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1330.2000.1

>prot_E-siliculosus-1a_F_contig1330.2000.1 ID=prot_E-siliculosus-1a_F_contig1330.2000.1|Name=mRNA_E-siliculosus-1a_F_contig1330.2000.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=48bp
MNFTETSSRTMVEWQFGLFWSLGQFWNQTTRKTLRIGVTFVDSVVAA*
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mRNA from alignment at E-siliculosus-1a_F_contig1330:2420..2654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1330.2000.1 ID=mRNA_E-siliculosus-1a_F_contig1330.2000.1|Name=mRNA_E-siliculosus-1a_F_contig1330.2000.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=235bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1330:2420..2654+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CATCGTTATTGCCAGGTATGAATTTTACGGAAACTTCGTCGAGAACGATG
GTGGAGTGGCAATTTGGACTATTCTGGAGTCTTGGACAATTCTGGAATCA
AACAACGCGCAAAACGCTAAGAATCGGCGTGACGTTCGTGGATAGCGTGG
TTGCCGCCTGAGGCTTGGGGGCTTCAAGAAACAATCGAAATCAAGAGGCG
TCTTGGAAGAATCTGTCGTCATCAAGCGTCCGGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1330:2420..2654+

>mRNA_E-siliculosus-1a_F_contig1330.2000.1 ID=mRNA_E-siliculosus-1a_F_contig1330.2000.1|Name=mRNA_E-siliculosus-1a_F_contig1330.2000.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1330:2420..2654+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAATTTTACGGAAACTTCGTCGAGAACGATGGTGGAGTGGCAATTTGG
ACTATTCTGGAGTCTTGGACAATTCTGGAATCAAACAACGCGCAAAACGC
TAAGAATCGGCGTGACGTTCGTGGATAGCGTGGTTGCCGCCTGAATGAAT
TTTACGGAAACTTCGTCGAGAACGATGGTGGAGTGGCAATTTGGACTATT
CTGGAGTCTTGGACAATTCTGGAATCAAACAACGCGCAAAACGCTAAGAA
TCGGCGTGACGTTCGTGGATAGCGTGGTTGCCGCCTGA
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