mRNA_E-siliculosus-1a_F_contig1328.1986.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1328.1986.1 vs. uniprot
Match: D7FIZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIZ1_ECTSI) HSP 1 Score: 485 bits (1248), Expect = 1.510e-163 Identity = 330/400 (82.50%), Postives = 331/400 (82.75%), Query Frame = 1
Query: 1 MGTQDFARRNVGDSEDSVVVSRDSSAEEMTAGAAQSISAGPAPSLPWGRVAPSPDSSQPLPGPWGRLQEVMDEIKVMSPASPTSRVPHPFLSGARPSSTPAAEERKGFAGTSSPLPMSTRGRIAGSSXXXXXXXXXXADSRQQPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTPCETPTXXXXXXVAPAXXLPXXXXXXXXXXXXXXXXXXXXXXXXXADANEPGVDTKQEREEETPPVPVPGWALGYSTSPPFSSAATGTRGTGGEVAATAAPTATAAAGSDSGAAPVGTASHGFSDQAGEVSEDLRGDDTTEDLVNVRAVLPVEDDAATGGRGYVGQRFIQAAEALSESPQLRRAAGAAATAVSAAAGTARVQFTYTSRTIGK 1200
MGTQDFARRNVGDSEDSV VSRDSSAEE+TA AA SISA PAPSLPWGRVAPSPDSSQPLPGPWGRLQEVMDEIKVMSPASPTSRVPHPFLSGARPSST AAEERKGFA TSSPLPM TRGRIAGSS XXXXXXX ADSRQ XXXXXXXXXXXXXXXX NTPCETP VAPA LP XXXXXXXXXXXXXXXXADANEPGV TKQEREEETPPVPVPG ALGYSTSPPFSSAATGTRG GGEVAATAAP SDSGAAPVGTASHGFSDQAGE EDLRGDDT EDLVNVRAVLPVEDDAATGGRGYVGQRFIQAAEALSESPQLRRAAGAAATAVSAAAGTARVQFTYTSRTIGK
Sbjct: 1 MGTQDFARRNVGDSEDSVAVSRDSSAEEVTAEAAHSISAAPAPSLPWGRVAPSPDSSQPLPGPWGRLQEVMDEIKVMSPASPTSRVPHPFLSGARPSSTAAAEERKGFARTSSPLPMPTRGRIAGSSSXXXXXXXRIADSRQX-XXXXXXXXXXXXXXXXXXPRSLSPSSSPRQVTSPPTPAALAANTPCETPPTAVQQPVAPASSLPSSQHLAAVEXXXXXXXXXXXXXXXXADANEPGVHTKQEREEETPPVPVPGLALGYSTSPPFSSAATGTRGAGGEVAATAAPXXXXXXXSDSGAAPVGTASHGFSDQAGEEPEDLRGDDTAEDLVNVRAVLPVEDDAATGGRGYVGQRFIQAAEALSESPQLRRAAGAAATAVSAAAGTARVQFTYTSRTIGK 399
BLAST of mRNA_E-siliculosus-1a_F_contig1328.1986.1 vs. uniprot
Match: D7FIZ0_ECTSI (GOLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIZ0_ECTSI) HSP 1 Score: 345 bits (886), Expect = 2.010e-110 Identity = 197/216 (91.20%), Postives = 200/216 (92.59%), Query Frame = 1
Query: 1180 TSRTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYSSGETFQGRWTADSDSNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGIDPAAPXXXXXXXXXXXXXXXXXXXXXXXGVGSVGGAEDTEAFAIDESEGEETSAYSAGVGTDRARVAVSS 1827
TS +ILVASAKSFEEFVDEQLQEDGSGQVLRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYSS ETFQGRWTA+SDS+APAVVIMVWDNSYSCLRPKTLAYKAQVNRPGIDPAAPXXXXXXXXXXXXXX VGSVGGAEDTEAFAIDESEGEETSAYSAGVGTDRARVAV S
Sbjct: 10 TSHDAVQILVASAKSFEEFVDEQLQEDGSGQVLRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYSSAETFQGRWTANSDSDAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGIDPAAPXXXXXXXXXXXXXXQPPVAFGGS-VGSVGGAEDTEAFAIDESEGEETSAYSAGVGTDRARVAVGS 224
BLAST of mRNA_E-siliculosus-1a_F_contig1328.1986.1 vs. uniprot
Match: A0A836CBJ5_9STRA (GOLD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBJ5_9STRA) HSP 1 Score: 137 bits (345), Expect = 4.990e-30 Identity = 68/155 (43.87%), Postives = 100/155 (64.52%), Query Frame = 1
Query: 1159 ARVQFTYTSRTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYSSGETFQGRWTADSDSNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGIDP 1623
A+ + TS+T+ + + ++ V E +E+ +V+R + L VPRG + S ++V GC +CWE+RVKDYD+GFA+R R Q MGG+ EEDI + R+ SGE +G+WTAD D + V+++WDN +S LR KTLAYK +V+RPG P
Sbjct: 333 AKDTYATTSQTVAEAIALGHIKLDQIVAEADREEFY-EVIRTDALMDLTVPRGGRYSLPYLVQQGCSICWEYRVKDYDIGFAVRLRLQAMGGAIEEDICSMARFGSGEAHRGKWTADEDRS----VVLIWDNKFSMLRSKTLAYKVEVHRPGRPP 482
BLAST of mRNA_E-siliculosus-1a_F_contig1328.1986.1 vs. uniprot
Match: A0A813HLX1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HLX1_POLGL) HSP 1 Score: 94.4 bits (233), Expect = 6.370e-17 Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 1
Query: 1186 RTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYSSGETFQGRWTADSDSNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGI 1617
RT G VA S + ++ +E+ + ++ +G L VP + + A+ V+ G L W FRVKD+D+GFA+R R Q GGS EE++ ++RY + +T G W AD D +I+ +DN YS LR KT+AY +P +
Sbjct: 238 RTEGVSAVAWKGSARDTLENAAREE-QWKGIKIQGAEELAVPARTEHTCAYHVSKGSTLRWTFRVKDHDIGFAVRMRIQVWGGSQEEEVLSIERYDNADTISGSWVADEDRT----MILAFDNRYSKLRSKTVAYLVGTEKPPV 376
BLAST of mRNA_E-siliculosus-1a_F_contig1328.1986.1 vs. uniprot
Match: A0A7S1MKL5_ALECA (Hypothetical protein n=2 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MKL5_ALECA) HSP 1 Score: 91.7 bits (226), Expect = 1.670e-16 Identity = 46/112 (41.07%), Postives = 66/112 (58.93%), Query Frame = 1
Query: 1276 LRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYSSGETFQGRWTADSDSNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRP 1611
++ +G L VP + + A+ VA G L W FRVKD+D+GFA+R R Q GGS EE++ ++RY S +T G W AD +++ +DN YS LR KT+AY +P
Sbjct: 173 IKVQGAEELSVPARTEHTSAYHVAKGSTLRWTFRVKDHDIGFAVRMRVQEWGGSREEEVLGVERYDSTDTISGSWVADEAQT----IVLAFDNRYSRLRAKTVAYLVGTEKP 280
BLAST of mRNA_E-siliculosus-1a_F_contig1328.1986.1 vs. uniprot
Match: A0A813AZC1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813AZC1_9DINO) HSP 1 Score: 89.4 bits (220), Expect = 4.030e-16 Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 1186 RTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYSSGETFQGRWTADSDSNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGI 1617
RT G VA S + +D +E+ + ++ +G L VP + + A+ V G L W FRVK++D+GFA+R R Q GG+ EE++ ++RY + +T G W AD D +I+ +DN YS LR KT+AY +P +
Sbjct: 99 RTEGVSAVAWRGSARDTLDIAAREE-QWKDIKVQGAEELSVPARTEHTCAYHVTKGSTLRWTFRVKEHDVGFAVRMRVQVWGGAQEEEVLAMERYDNKDTISGSWVADEDRT----MILAFDNKYSKLRAKTVAYIVGTEKPPV 237
BLAST of mRNA_E-siliculosus-1a_F_contig1328.1986.1 vs. uniprot
Match: A0A812PXX9_9DINO (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812PXX9_9DINO) HSP 1 Score: 89.4 bits (220), Expect = 1.590e-15 Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 1186 RTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYSSGETFQGRWTADSDSNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGI 1617
RT G VA S + +D +E+ + ++ +G L VP + + A+ V G L W FRVK++D+GFA+R R Q GG+ EE++ ++RY + +T G W AD D +I+ +DN YS LR KT+AY +P +
Sbjct: 187 RTEGVSAVAWRGSARDTLDIAAREE-QWKDIKVQGAEELSVPARTEHTCAYHVTKGSTLRWTFRVKEHDVGFAVRMRVQVWGGAQEEEVLAMERYDNKDTISGSWVADEDRT----MILAFDNKYSKLRAKTVAYIVGTEKPPV 325
BLAST of mRNA_E-siliculosus-1a_F_contig1328.1986.1 vs. uniprot
Match: A0A812ZCU9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812ZCU9_9DINO) HSP 1 Score: 90.1 bits (222), Expect = 8.920e-15 Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 1186 RTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYSSGETFQGRWTADSDSNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGI 1617
RT G VA S + +D +E+ + ++ +G L VP + + A+ V G L W FRVK++D+GFA+R R Q GG+ EE++ ++RY + +T G W AD D +I+ +DN YS LR KT+AY +P +
Sbjct: 188 RTEGVSAVAWRGSARDTLDIAAREE-QWKDIKVQGAEELSVPARTEHTCAYHVTKGSTLRWTFRVKEHDIGFAVRMRIQVWGGAQEEEVLAMERYDNKDTISGSWVADEDRT----MILAFDNKYSKLRAKTVAYIVGTEKPPV 326
BLAST of mRNA_E-siliculosus-1a_F_contig1328.1986.1 vs. uniprot
Match: A0A1Q9DTX3_SYMMI (GOLD domain-containing protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DTX3_SYMMI) HSP 1 Score: 89.4 bits (220), Expect = 1.160e-14 Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 1186 RTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYSSGETFQGRWTADSDSNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGI 1617
RT G VA S + +D +E+ + ++ +G L VP + + A+ V G L W FRVK++D+GFA+R R Q GG+ EE++ ++RY + +T G W AD D +I+ +DN YS LR KT+AY +P +
Sbjct: 188 RTEGVSAVAWRGSARDTLDIAAREE-QWKDIKVQGAEELSVPARTEHTCAYHVTKGSTLRWTFRVKEHDVGFAVRMRVQVWGGAQEEEVLAMERYDNKDTISGSWVADEDRT----MILAFDNKYSKLRAKTVAYIVGTEKPPV 326
BLAST of mRNA_E-siliculosus-1a_F_contig1328.1986.1 vs. uniprot
Match: A0A7S1AHQ6_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AHQ6_NOCSC) HSP 1 Score: 84.7 bits (208), Expect = 8.270e-14 Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1
Query: 1276 LRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYSSGETFQGRWTADSDSNAPAVVIMVWDNSYSCLRPKTLAY 1590
++ G ++VP + + + V G L W FRVKD D+GF R R Q GGS EE++ ++RY S +T G W AD + +++V+DN+YS LR KT+A+
Sbjct: 224 IKIRGAEEIVVPARTEHTSVYHVHKGTTLRWTFRVKDNDIGFGTRIRVQAWGGSKEEEVLAVERYDSADTISGSWVADEERT----MVLVFDNTYSRLRSKTIAF 324 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1328.1986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1328.1986.1 >prot_E-siliculosus-1a_F_contig1328.1986.1 ID=prot_E-siliculosus-1a_F_contig1328.1986.1|Name=mRNA_E-siliculosus-1a_F_contig1328.1986.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=689bp MGTQDFARRNVGDSEDSVVVSRDSSAEEMTAGAAQSISAGPAPSLPWGRVback to top mRNA from alignment at E-siliculosus-1a_F_contig1328:14779..20310- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1328.1986.1 ID=mRNA_E-siliculosus-1a_F_contig1328.1986.1|Name=mRNA_E-siliculosus-1a_F_contig1328.1986.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5532bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1328:14779..20310- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1328:14779..20310- >mRNA_E-siliculosus-1a_F_contig1328.1986.1 ID=mRNA_E-siliculosus-1a_F_contig1328.1986.1|Name=mRNA_E-siliculosus-1a_F_contig1328.1986.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4134bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1328:14779..20310- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |