mRNA_E-siliculosus-1a_F_contig13247.1976.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13247.1976.1
Unique NamemRNA_E-siliculosus-1a_F_contig13247.1976.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13247.1976.1 vs. uniprot
Match: D7G6P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P9_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 9.600e-40
Identity = 71/77 (92.21%), Postives = 76/77 (98.70%), Query Frame = 1 
Query:    1 MRLGGQSALHALHKAAGFPGATTVYAKIRERSMKFVMCASLEKECLVAAITANLERFSRLYDGEKRVVILAIDEIAT 231
            MRLGGQ+ALHALHKAAGFPGA+TVYAKIRERSMKFV+CASLEK+CLVAAITANLERFSRLYDGE+RVVIL IDEIAT
Sbjct:    1 MRLGGQTALHALHKAAGFPGASTVYAKIRERSMKFVVCASLEKDCLVAAITANLERFSRLYDGERRVVILEIDEIAT 77
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BLAST of mRNA_E-siliculosus-1a_F_contig13247.1976.1 vs. uniprot
Match: D7FQM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM1_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 2.800e-34
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:    1 MRLGGQSALHALHKAAGFPGATTVYAKIRERSMKFVMCASLEKECLVAAITANLERFSRLYDGEKRVVILAIDEIAT 231
            MRLGGQS LHALHKAAGFPGATTVYAKIRERSMKF +CAS + ECL AAITANLERF  LY GEKRV+IL +DE+AT
Sbjct:    1 MRLGGQSLLHALHKAAGFPGATTVYAKIRERSMKFALCASADVECLTAAITANLERFVSLYKGEKRVIILQMDELAT 77
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13247.1976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6P9_ECTSI9.600e-4092.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQM1_ECTSI2.800e-3481.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13247contigE-siliculosus-1a_F_contig13247:153..568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size231
Model size231
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927846.306075-CDS-E-siliculosus-1a_F_contig13247:152..2871622927846.306075-CDS-E-siliculosus-1a_F_contig13247:152..287Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13247 153..287 -
1696318705.4421763-CDS-E-siliculosus-1a_F_contig13247:152..2871696318705.4421763-CDS-E-siliculosus-1a_F_contig13247:152..287Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13247 153..287 -
1622927846.3186092-CDS-E-siliculosus-1a_F_contig13247:472..5681622927846.3186092-CDS-E-siliculosus-1a_F_contig13247:472..568Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13247 473..568 -
1696318705.4497292-CDS-E-siliculosus-1a_F_contig13247:472..5681696318705.4497292-CDS-E-siliculosus-1a_F_contig13247:472..568Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13247 473..568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13247.1976.1prot_E-siliculosus-1a_F_contig13247.1976.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13247 153..568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13247.1976.1

>prot_E-siliculosus-1a_F_contig13247.1976.1 ID=prot_E-siliculosus-1a_F_contig13247.1976.1|Name=mRNA_E-siliculosus-1a_F_contig13247.1976.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=77bp
MRLGGQSALHALHKAAGFPGATTVYAKIRERSMKFVMCASLEKECLVAAI
TANLERFSRLYDGEKRVVILAIDEIAT
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mRNA from alignment at E-siliculosus-1a_F_contig13247:153..568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13247.1976.1 ID=mRNA_E-siliculosus-1a_F_contig13247.1976.1|Name=mRNA_E-siliculosus-1a_F_contig13247.1976.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=416bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13247:153..568- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGCTCGGGGGACAATCGGCACTGCATGCGTTGCACAAAGCAGCAGG
GTTCCCGGGGGCAACGACGGTGTACGCGAAGATCCGGGAGCGTTCGGTGA
GCAACAGGGAGTTGGAACATTAGGATCACCACAAGAACAAGCAGCAGCCA
TTTTAGCCGTTTGCACACGTTGATTTGCAGTGCGACAATCTCGGTATATT
GTGGTCGGTTTCTTTTCACTCCCTCTGCTCTTGCTGACGCCGTGATTCTG
CAACGTTCTGTGTCCATGTTTGTCATTGCAGATGAAGTTTGTCATGTGCG
CTTCGCTTGAGAAGGAGTGCCTGGTTGCGGCAATCACGGCGAACCTGGAG
CGCTTTTCGCGGCTGTACGATGGCGAGAAGAGAGTGGTCATTCTGGCGAT
CGACGAGATTGCGACG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13247:153..568-

>mRNA_E-siliculosus-1a_F_contig13247.1976.1 ID=mRNA_E-siliculosus-1a_F_contig13247.1976.1|Name=mRNA_E-siliculosus-1a_F_contig13247.1976.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=462bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13247:153..568- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGCTCGGGGGACAATCGGCACTGCATGCGTTGCACAAAGCAGCAGG
GTTCCCGGGGGCAACGACGGTGTACGCGAAGATCCGGGAGCGTTCGATGC
GGCTCGGGGGACAATCGGCACTGCATGCGTTGCACAAAGCAGCAGGGTTC
CCGGGGGCAACGACGGTGTACGCGAAGATCCGGGAGCGTTCGATGAAGTT
TGTCATGTGCGCTTCGCTTGAGAAGGAGTGCCTGGTTGCGGCAATCACGG
CGAACCTGGAGCGCTTTTCGCGGCTGTACGATGGCGAGAAGAGAGTGGTC
ATTCTGGCGATCGACGAGATTGCGACGATGAAGTTTGTCATGTGCGCTTC
GCTTGAGAAGGAGTGCCTGGTTGCGGCAATCACGGCGAACCTGGAGCGCT
TTTCGCGGCTGTACGATGGCGAGAAGAGAGTGGTCATTCTGGCGATCGAC
GAGATTGCGACG
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