mRNA_E-siliculosus-1a_F_contig13241.1973.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13241.1973.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 305 bits (782), Expect = 2.270e-103 Identity = 167/210 (79.52%), Postives = 174/210 (82.86%), Query Frame = 1
Query: 1 MPSTLSKASGSADPTHATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLGVSKELIEAGADLEARPGGVDDTPLHVAATKGFCQEMKLLIDAGANVDSRLDNGSTPLFXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYTRVLVRNRSLYKRRRRTGSRNGRFSQTRGNRHLPVRCRCG 630
MPSTLSKASGS DPT ATT IDR CGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG TALHH+VYH HL VSK+LIEAGADLEAR GG DTPLHVAATKGFCQ MKLL+D SRLD+G+TPLF LRANANPLLSA GSLPL AVY R LVRNRSLYKRRRRTGSRNGRFSQ+RG+RHLPVRCRCG
Sbjct: 1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGG-KDTPLHVAATKGFCQGMKLLMD------SRLDDGATPLFLAASDGRLEAVRVLLRANANPLLSACGSLPLYMAVYNRPLVRNRSLYKRRRRTGSRNGRFSQSRGHRHLPVRCRCG 203
BLAST of mRNA_E-siliculosus-1a_F_contig13241.1973.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 181 bits (459), Expect = 2.420e-49 Identity = 92/104 (88.46%), Postives = 97/104 (93.27%), Query Frame = 1
Query: 25 SGSADPTHATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLGVSKELIEAGADLEARPGGVDDTPLHVAATKGFCQEM 336
SGS + ATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVS+ADSDGY ALHHAVYHKHL VSK+LIEAGADL+ARPGG+D TPLHVAATKGFCQEM
Sbjct: 399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGID-TPLHVAATKGFCQEM 501
BLAST of mRNA_E-siliculosus-1a_F_contig13241.1973.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 175 bits (443), Expect = 5.190e-49 Identity = 116/170 (68.24%), Postives = 120/170 (70.59%), Query Frame = 1
Query: 1 MPSTLSKASGSADPTHATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLGVSKELIEAGADLEARPGGVDDTPLHVAATKGFCQEMKLLIDAGANVDSRLDNGSTPLFXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVY 510
MPSTLSKASGS + ATTDIDRRCGDTN TPLMVASVIGSSRVV+DLLRQGASVSVADSDGYTALHH+VYH+HL VS LIEAGADLEARPG XXXXXXXXXXXXX LRANANPLLSAYGSLPLGTAVY
Sbjct: 1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LRANANPLLSAYGSLPLGTAVY 169
BLAST of mRNA_E-siliculosus-1a_F_contig13241.1973.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 152 bits (385), Expect = 3.750e-39 Identity = 109/170 (64.12%), Postives = 109/170 (64.12%), Query Frame = 1
Query: 1 MPSTLSKASGSADPTHATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLGVSKELIEAGADLEARPGGVDDTPLHVAATKGFCQEMKLLIDAGANVDSRLDNGSTPLFXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVY 510
MPSTLSKASGSADPT ATTDIDRRCG TNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHL VSK XXXXXXXXXXXXXX ANANPLLSAYGSLPLG AVY
Sbjct: 422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ANANPLLSAYGSLPLGMAVY 590
BLAST of mRNA_E-siliculosus-1a_F_contig13241.1973.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 146 bits (369), Expect = 4.940e-38 Identity = 76/79 (96.20%), Postives = 76/79 (96.20%), Query Frame = 1
Query: 1 MPSTLSKASGSADPTHATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLGVSK 237
MPSTLSKASGSADPT ATTDIDRRCGDTNQTPLMVASVIG SRVVRDLLRQGASVSVADSDGYTALHHAVYHKHL VSK
Sbjct: 7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 85
BLAST of mRNA_E-siliculosus-1a_F_contig13241.1973.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI) HSP 1 Score: 119 bits (298), Expect = 2.940e-30 Identity = 75/129 (58.14%), Postives = 89/129 (68.99%), Query Frame = 1
Query: 1 MPSTLSK-----ASGSADPTHA-----TTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLGVSKELIEAGADLEARPGGVDDTPLHVAATKGFCQEMKLLIDAG 357
MPSTLSK ASGS + T A + +ID GD +TPLM AS +G RVVR LLR GA VSVAD+DG TALH ++ +KHL VSK L++AGA +EAR GVD TPLHVAA KGF + M +LI AG
Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR--GVDGTPLHVAAAKGFHKGMVMLIHAG 127
BLAST of mRNA_E-siliculosus-1a_F_contig13241.1973.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI) HSP 1 Score: 116 bits (290), Expect = 4.730e-29 Identity = 74/130 (56.92%), Postives = 87/130 (66.92%), Query Frame = 1
Query: 1 MPSTLSK-----ASGSADPTHA-----TTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLGVSKELIEAGADLEARPGGVDDTPLHVAATKGFCQEMKLLIDAGA 360
MPSTLSK ASGS + T A + DID GD +TPLM AS +G RVVR LLR GA VSVAD+DG TALH ++ KHL VS+ L++AGA +EAR GVD TPLHVAA KGF + M +LI A
Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEAR--GVDGTPLHVAAAKGFHKGMVMLIHVDA 128
BLAST of mRNA_E-siliculosus-1a_F_contig13241.1973.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 121 bits (303), Expect = 6.450e-29 Identity = 71/160 (44.38%), Postives = 96/160 (60.00%), Query Frame = 1
Query: 55 TDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLGVSKELIEAGADLEARPGGV--------DDTPLHVAATKGFCQEMKLLIDAGANVDSRLDNGSTPLFXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVY 510
T+IDRRC + T LM A+ G R+VR LLR GA VSV+ DG+TALH A+ ++L V+K LI+AGA++EA+ V TPLH+AA +GFC+ M LI+AGANVDSR+ +GST ++ + ANPLL + PL A +
Sbjct: 42 TEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLLRVGPTHPLDIATH 201
BLAST of mRNA_E-siliculosus-1a_F_contig13241.1973.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 6.150e-21 Identity = 67/141 (47.52%), Postives = 79/141 (56.03%), Query Frame = 1
Query: 103 VASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLGVSKELIEAGADLEARPG-----GVDDTPLHVAATKGFCQEMKLLIDAGANVDSRLDNGSTPLFXXXXXXXXXXXXXXLRANANPLLSAYG--SLPLGTA 504
VAS +G RVVR LLR GA VS AD+DG TALH ++ +KHL VSK L++AGADLEAR GV TPLHVAA KGF + M +LI AG + A ANP+L+AY SLPL A
Sbjct: 37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAGVK-------------------------GFVGAKANPILAAYDGESLPLDVA 152
BLAST of mRNA_E-siliculosus-1a_F_contig13241.1973.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 8.710e-16 Identity = 59/163 (36.20%), Postives = 74/163 (45.40%), Query Frame = 1
Query: 55 TDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLGVSKELIEAGA-----------DLEARPGGVDDTPLHVAATKGFCQEMKLLIDAGANVDSRLDNGSTPLFXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVY 510
T+IDRRC + T LM A+ G R+VR LLR GA VSV+ DG+ D E G TPLH+A +GFC M LIDAGANVDSR+ NGST ++ L+ ANP+L + PL A +
Sbjct: 29 TEIDRRCEENGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXKADFLHPDQEVVQG---QTPLHLATGEGFCDGMVALIDAGANVDSRMSNGSTAMYIAACTGNLDAVKILLQERANPMLCVGPTHPLDIATH 188 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13241.1973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13241.1973.1 >prot_E-siliculosus-1a_F_contig13241.1973.1 ID=prot_E-siliculosus-1a_F_contig13241.1973.1|Name=mRNA_E-siliculosus-1a_F_contig13241.1973.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=211bp MPSTLSKASGSADPTHATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRback to top mRNA from alignment at E-siliculosus-1a_F_contig13241:589..1247+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13241.1973.1 ID=mRNA_E-siliculosus-1a_F_contig13241.1973.1|Name=mRNA_E-siliculosus-1a_F_contig13241.1973.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=659bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13241:589..1247+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13241:589..1247+ >mRNA_E-siliculosus-1a_F_contig13241.1973.1 ID=mRNA_E-siliculosus-1a_F_contig13241.1973.1|Name=mRNA_E-siliculosus-1a_F_contig13241.1973.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1266bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13241:589..1247+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |