mRNA_E-siliculosus-1a_F_contig1324.1969.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1324.1969.1
Unique NamemRNA_E-siliculosus-1a_F_contig1324.1969.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1324.1969.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 1.630e-121
Identity = 191/205 (93.17%), Postives = 194/205 (94.63%), Query Frame = 2
Query:  761 MNQHMDIMAILTGAGVLDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSVEWCC--RPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSFLREKVVDGKPATEEQLHRLQAIRRLLLQVDAVHAVSLLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKRRHAFVASLLRHS 1369
            MNQHMDIMAILTGAGV DAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCS+EWC    PRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTS LREKVVDGKPATEEQLHRLQAIRRLLL+VDAVHAVS LWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAK  H FVA+LLR S
Sbjct:    1 MNQHMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKTCHVFVATLLRSS 205          
BLAST of mRNA_E-siliculosus-1a_F_contig1324.1969.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.680e-93
Identity = 199/391 (50.90%), Postives = 237/391 (60.61%), Query Frame = 2
Query:  218 VEALLKHGANPSIGAEGGFTALHIG-AQERNATVVKMLTNAGADLEVVAGSDGLTPLHAAVRGGDSEAVRALIEAGANPNSQTPSGVTVGMGFLSLRAVXXXXXXXXXXXXXXXXXXXXXXXXXAASAISTLRSSPYGTTVVPLDIAACAGYSDVVRELVEEVGIERCDATNAGAQALHLAAMNQHMDIMAILTGAGVLDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVH-AYANSSDGSGMTPLSCSVEWCCR--PRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSFLREKVV-DGKPATEEQLHRLQAIRRLLLQVDAVHAVSLLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKRRHAFVASLLRHSVK 1375
             + L+K GAN SI  + GFTALH   A+E +  +VK+L  AGADL+ +   +G  PLH A                 NP+ Q P G T     L + A                           A+ +    S P  TT VPLD+AA  G++DVVREL++E+GIE CDAT+AGA AL  AA NQH+DIMAILT AGV+D  G  L   AG+G EASV+FLLR R KE    V  AY N+ D +G TPL    + C    PRIVR+LVDAGADTTS V+V NL GGV +NDTPLA T   LR+K+V DGKPAT+E L RL+AI RLLL+VDAVHAVS LWPS AP I  A E    PEP  P L L LPILKRR KRR   VA+LLR+SVK
Sbjct:  155 AKMLIKKGANVSIADKRGFTALHFCCAREEDDAIVKLLAKAGADLDAIIPGEGSAPLHRATHHEXXXXXXXXXXXXXNPDCQLPDGSTA----LHIAAEEGQVAVMRELLRGN------------ANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDT-GKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETD--PEPPLPALKLMLPILKRRTKRRCGLVATLLRYSVK 526          
BLAST of mRNA_E-siliculosus-1a_F_contig1324.1969.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 7.010e-57
Identity = 120/219 (54.79%), Postives = 152/219 (69.41%), Query Frame = 2
Query:  617 SPYGTTVVPLDIAACAGYSDVVRELVEEVGIERCDATNAGAQALHLAAMNQHMDIMAILTGAGVLDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSV-HAYANSSDGSGMTPLSCSVEWCCR--PRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSFLREKVVD-GKPATEEQLHRLQAIRRLLLQVDAVHAVSLLWPSDAPSIVHAVER 1261
            S  G   VPLD+AA +G+S VVR LV+E+GI+ C+  NAG QAL LAA  + +D +AILTGAG +D  G  L+  A    EAS +  LRQR KE +  V +A  N    SG+T L  S++ C    PRIVRLL++AGADTTS +R TN  G V+ N TPLA+TTS+L EK++D G+PATEE L RL+AIRRLLL+ +AVHAVS LWPSDA  + HA E+
Sbjct:  164 SSSGFPGVPLDVAASSGHSGVVRHLVQELGIKGCNPENAGKQALLLAASKRDLDTLAILTGAGAVDTSGSALMCAA----EASFKHFLRQRLKEEKGGVEYASINDRISSGLTALVFSIQRCLSQTPRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAAEK 378          
BLAST of mRNA_E-siliculosus-1a_F_contig1324.1969.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 1.270e-54
Identity = 127/269 (47.21%), Postives = 171/269 (63.57%), Query Frame = 2
Query:  590 ASAISTLRSSPYGTTVVPLDIAACAGYSDVVRELVEEVGIERCDATNAGAQALHLAAMNQHMDIMAILTGAGVLDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSVEWCCRPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSFLREKV--VDGKPATEEQLHRLQAIRRLLLQVDAVHAVSLLWPSDAPSIVHAVERSCGPEPRRPPLS--LTLPIL--KRRAKRRHAFVASLLRHSVKP 1378
            A  + T    P G T +PLD AA  G+ +VV EL+ +VGI+ C  ++ G +AL  AA  ++++IM ILT AGV+D  G  L+  AG G E  ++FLL Q R    M   AY N+ D  G+TPL   ++   RPR+VRLLV+AGADTTS V V N  GG + + TPL +T + +R+KV  V   PA+ EQLH+L+AIRRLLL+V+AVHAVS LWPSD  +I  A  R      R   +S  +TLP+L  +RRA+ R   +A+LLR+S KP
Sbjct:  172 ADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDT-GLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQH-YRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTD---RTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435          
BLAST of mRNA_E-siliculosus-1a_F_contig1324.1969.1 vs. uniprot
Match: D8LDX5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX5_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.710e-54
Identity = 159/294 (54.08%), Postives = 190/294 (64.63%), Query Frame = 2
Query:  326 LTNAGADLEVVAGSDGLTPLHAAVRGGDSEAVRALIEAGANPNSQTPSGVTVGMGFLSLRAVXXXXXXXXXXXXXXXXXXXXXXXXXAASAISTLRSSPYGTTVVPLDIAACAGYSDVVRELVEEVGIERCDATNAGAQA---LHLAAMNQHMDIMAILTGAGVLDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSV-HAYANSSDGSGMTPLSCSVEWCCR--PRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSFLREKVV-DGKPATEEQLHRLQAIRRLLL 1186
            +  AGADLEV+  S G TPLH     G SE V  +I A ANPNS               R +   XXXXXXXXXXXXXXXXXXXXXX    ++   +S  G T +P+D+A   G+SDVVR+LV+  G   C   NAG+QA   L  AA  QH+ IMAILTGAGV+D +G  LLG A    EASV+FLLRQR  ES  SV ++Y N+SD  G TPL+ S++ CC    RI+RLL DAGAD  S VRVTN NG  EY+ TPLAV TS +REKV+ +G PATEE L+ L+AI RLLL
Sbjct:    1 MIGAGADLEVMT-SQGSTPLHKDALEGRSEVVGVMIRALANPNS---------------RMLCGAXXXXXXXXXXXXXXXXXXXXXXXXXFLTKKGNSSSGDTAIPMDVAVQNGHSDVVRKLVQWRG---CGVANAGSQACQALFFAASEQHLVIMAILTGAGVVDWVGLSLLGAAESALEASVKFLLRQRYHESTRSVEYSYVNASDTDGWTPLAHSIQRCCSHAARIIRLLFDAGADVASAVRVTNSNGQQEYSGTPLAVVTSCIREKVLANGTPATEEHLYMLEAIGRLLL 275          
BLAST of mRNA_E-siliculosus-1a_F_contig1324.1969.1 vs. uniprot
Match: D8LSC6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC6_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.790e-48
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 2
Query:  218 VEALLKHGANPSIGAEGGFTALHIGAQERNATVVKMLTNAGADLEVVAGSDGLTPLHAAVRGGDSEAVRALIEAGANPNSQTPSGVTVGMGFLSLRAV 511
            VE L+K GANPSI AEGGFTALHIGAQERNATVVKMLTNAGADLEVVAGSDGLTPLHAAVRGG SEAVRALIEAGANPNSQTPSGVTVGMGFLSLRAV
Sbjct:   12 VEVLIKRGANPSIAAEGGFTALHIGAQERNATVVKMLTNAGADLEVVAGSDGLTPLHAAVRGGGSEAVRALIEAGANPNSQTPSGVTVGMGFLSLRAV 109          
BLAST of mRNA_E-siliculosus-1a_F_contig1324.1969.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 3.830e-48
Identity = 126/335 (37.61%), Postives = 177/335 (52.84%), Query Frame = 2
Query:  377 TPLHAAVRGGDSEAVRALIEAGANPNSQTPSGVTVGMGFLSLRAVXXXXXXXXXXXXXXXXXXXXXXXXXAASAISTLRSSPYGTTVVPLDIAACAGYSDVVRELVEEVGIERCDATNAGAQALHLAAMNQHMDIMAILTGAGVLDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSVEWCCRPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSFLREKVVDGKPATEEQLHRLQAIRRLLLQVDAVHAVSLLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILK--RRAKRRHAFVASLLRHSVK 1375
            TPL  A   G + +V AL++AG+N N++   G T                                     A  + T  S       +PLD+AA  G+ +VV EL+ +VGI+ C  ++ G  AL  AA+   +DIMAILT AGV+D  G  L+  AG G EA ++FLL Q R        AY N+ +G G+T L   ++  CRPR+V+LLV+AGADTTS V + N  G  +++ TPL +T   L  +    KP T E+ ++L+ IRRLLL+ +AVHAVS LWPSD P+I HA  +  G        +    +L   RR + R   +A+LLR+S K
Sbjct:  117 TPLDCAAETGCAASVTALLKAGSNINTRRSDGAT----------------PLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDT-GLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLDGIQR-CRPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGR--SAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLRYSSK 431          
BLAST of mRNA_E-siliculosus-1a_F_contig1324.1969.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.040e-44
Identity = 116/261 (44.44%), Postives = 154/261 (59.00%), Query Frame = 2
Query:  632 TVVPLDIAACAGYSDVVRELVEEVGIERCDATNAGAQALHLAAMNQHMDIMAILTGAGVLDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSVEWC------CRPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSFLREKVVDGKPATEEQLHRLQAIRRLLLQVDAVHAVSLLWPSDA------PSIVHAVERSCGPEPRRPPLSLTLPILKRRAKRRHAFVASLLRHSVKP 1378
            T++PLD AA  G   V+REL++ VGIE C   + G  AL +A   + +  MA+LT AGV+D  G  L  +AGLGREASV++LL+   K       AY N  D +G TPL  S+  C        PR+ RLLV+AGADTT+ +R TN  G V ++ TPL +T   L++K VDG   ++++L RL+ IRRLLLQV+AVHA S LWPS +      P   +A E +       P L   LPIL+RRA+R      +L RH  KP
Sbjct:  169 TLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDT-GQALTISAGLGREASVKYLLQNHAKH--YGPGAYVNVRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPD--NAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRKP 424          
BLAST of mRNA_E-siliculosus-1a_F_contig1324.1969.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.840e-43
Identity = 112/267 (41.95%), Postives = 149/267 (55.81%), Query Frame = 2
Query:  590 ASAISTLRSSPYGTTVVPLDIAACAGYSDVVRELVEEVGIERCDATNAGAQALHLAAMNQHMDIMAILTGAGVLDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYAN-SSDGSGMTPLSCSVEWC----CRPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSFLREKVVDGKPATEEQLHRLQAIRRLLLQVDAVHAVSLLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKRRHAFVASLLRHSVK 1375
            A+ + T  S   G + VPL++AA  G S VV EL+ E GI  C   + G  AL +AA+   +DIM++L  AGV+D +G  LL   G G+EA+V FLLRQ+ +  + S   Y N + D  G+T L  S        C PRI R LVDAGADTTS V++         N TPL     +   +     PAT+EQL RL+A RR+LL+V AVHAVS +WPSDAP +          +     L+  LP+L+RRA RR     +L R+S K
Sbjct:  142 ANPLLTWSSESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTS---YVNIARDDDGLTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRTAKHSPTQLTTVLPVLRRRAGRRALLWDTLFRYSKK 405          
BLAST of mRNA_E-siliculosus-1a_F_contig1324.1969.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 3.830e-41
Identity = 115/256 (44.92%), Postives = 146/256 (57.03%), Query Frame = 2
Query:  626 GTTVVPLDIAACAGYSDVVRELVEEVGIERCDATNAGAQALHLAAMNQHMDIMAILTGAGVLDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSVEWC-CRPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSFLREKVVDGKPATEEQLHRLQAIRRLLLQVDAVHAVSLLWPSDA-----PSIVHAVERSCGPEPRRPPLSLTLPILKRRAKRRHAFVASLLRHSVK 1375
            G T VPLD AA  G+  V RELV+  GI  C   +AG  AL  AA++QH+D+MA+L  AGV+D  G  L+ T  LGRE +++FLL Q+ + +  + +A +   DG G TPL  +V    C PR+VRLLVDAGAD T  VRV +   G     TPL   T  L EKVVD   AT +QL  L+A RRLLLQV+ VHA S LW   A     P    A   S   +P    L   LPI+ RR+ RR A +  + R + K
Sbjct:  179 GNTFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDT-GNALVATVFLGRERALKFLLEQKGEGTARTTYA-STPRDGRGHTPLLSAVTTGPCSPRVVRLLVDAGADATLAVRVPD-GFGRSTKYTPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGGHAGCPAAPGKKRAQTESTNGKP----LKSRLPIMWRRSARRGAALPGVFRLAKK 427          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1324.1969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSC5_ECTSI1.630e-12193.17EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FT11_ECTSI1.680e-9350.90EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FVU0_ECTSI7.010e-5754.79EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KJA9_9PHAE1.270e-5447.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDX5_ECTSI1.710e-5454.08EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LSC6_ECTSI1.790e-4894.90Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5KQV0_9PHAE3.830e-4837.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJF9_ECTSI1.040e-4444.44EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVU3_ECTSI1.840e-4341.95EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LL76_ECTSI3.830e-4144.92EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1324contigE-siliculosus-1a_F_contig1324:19790..22608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1059
Model size1671
Exons2
Ec32 orthologEc-21_003200.1
Ec32 ortholog descriptionEsV-1-199
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
Seed eggNOG ortholog2880.D7FT11
Seed ortholog evalue1.8e-73
Seed ortholog score283.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1324.1969.1prot_E-siliculosus-1a_F_contig1324.1969.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1324 20080..22286 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927845.8729997-UTR-E-siliculosus-1a_F_contig1324:19789..200791622927845.8729997-UTR-E-siliculosus-1a_F_contig1324:19789..20079Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1324 19790..20079 -
1696318705.2667542-UTR-E-siliculosus-1a_F_contig1324:19789..200791696318705.2667542-UTR-E-siliculosus-1a_F_contig1324:19789..20079Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1324 19790..20079 -
1622927845.9157014-UTR-E-siliculosus-1a_F_contig1324:22286..226081622927845.9157014-UTR-E-siliculosus-1a_F_contig1324:22286..22608Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1324 22287..22608 -
1696318705.3028104-UTR-E-siliculosus-1a_F_contig1324:22286..226081696318705.3028104-UTR-E-siliculosus-1a_F_contig1324:22286..22608Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1324 22287..22608 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927845.88674-CDS-E-siliculosus-1a_F_contig1324:20079..200981622927845.88674-CDS-E-siliculosus-1a_F_contig1324:20079..20098Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1324 20080..20098 -
1696318705.2846184-CDS-E-siliculosus-1a_F_contig1324:20079..200981696318705.2846184-CDS-E-siliculosus-1a_F_contig1324:20079..20098Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1324 20080..20098 -
1622927845.9010038-CDS-E-siliculosus-1a_F_contig1324:21246..222861622927845.9010038-CDS-E-siliculosus-1a_F_contig1324:21246..22286Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1324 21247..22286 -
1696318705.2939413-CDS-E-siliculosus-1a_F_contig1324:21246..222861696318705.2939413-CDS-E-siliculosus-1a_F_contig1324:21246..22286Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1324 21247..22286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1324.1969.1

>prot_E-siliculosus-1a_F_contig1324.1969.1 ID=prot_E-siliculosus-1a_F_contig1324.1969.1|Name=mRNA_E-siliculosus-1a_F_contig1324.1969.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=353bp
MLTNAGADLEVVAGSDGLTPLHAAVRGGDSEAVRALIEAGANPNSQTPSG
VTVGMGFLSLRAVTPLHVAAAKGRTGALRELLRAKANPAASAISTLRSSP
YGTTVVPLDIAACAGYSDVVRELVEEVGIERCDATNAGAQALHLAAMNQH
MDIMAILTGAGVLDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAY
ANSSDGSGMTPLSCSVEWCCRPRIVRLLVDAGADTTSTVRVTNLNGGVEY
NDTPLAVTTSFLREKVVDGKPATEEQLHRLQAIRRLLLQVDAVHAVSLLW
PSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKRRHAFVASLLRHSV
KP*
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mRNA from alignment at E-siliculosus-1a_F_contig1324:19790..22608-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1324.1969.1 ID=mRNA_E-siliculosus-1a_F_contig1324.1969.1|Name=mRNA_E-siliculosus-1a_F_contig1324.1969.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2819bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1324:19790..22608- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTCAGAGGCACAGCGACAGCGAATCAGAGGCAGAAGAATGGACCCGGTC GCTAACCTGCGTGATGAGTGGAGTCAACTCCATACCGCTGTGACCATTGG TTCGATTAAGGATACACTAGCCGTGCTTGCGGCCGGGTCTGTTGACATCG ATCAACGCGGCGGTCCTCAGGGCCTCACTCCACTCATGATTGCCGTTTCT AAAGGTTGGGCGCACATGTGGAGGCCCTGCTCAAACACGGAGCCAACCCG TCAATAGGGGCTGAAGGTGGCTTCACTGCTCTCCACATTGGCGCTCAAGA GAGAAACGCCACCGTCGTCAAAATGTTGACCAACGCCGGTGCCGACCTCG AAGTCGTCGCGGGATCCGACGGCTTGACACCGCTTCACGCGGCCGTAAGA GGAGGAGACTCGGAGGCGGTGAGAGCGTTGATCGAGGCAGGCGCGAATCC CAACAGTCAAACGCCAAGCGGGGTGACTGTTGGTATGGGTTTTCTTTCAT TACGAGCCGTGACACCACTGCACGTCGCGGCTGCAAAAGGACGCACGGGT GCGTTGAGGGAACTGCTTCGTGCTAAGGCGAACCCAGCCGCGAGTGCAAT TTCGACATTGAGGTCATCGCCATACGGGACAACTGTCGTTCCACTGGACA TAGCTGCCTGCGCCGGGTACTCGGACGTGGTGCGCGAGCTAGTTGAGGAG GTTGGGATTGAACGTTGTGATGCTACAAATGCCGGGGCACAAGCTCTCCA CCTTGCCGCAATGAACCAGCACATGGACATTATGGCCATCCTGACCGGAG CCGGCGTGCTCGACGCGATGGGCTATGTTCTCCTTGGAACCGCCGGATTG GGCCGTGAGGCATCCGTCCAGTTTCTCTTGCGGCAGCGGCGCAAGGAGAG TGAAATGAGCGTTCATGCGTACGCTAACTCCAGCGACGGTTCCGGCATGA CACCCCTGAGTTGCAGTGTTGAGTGGTGCTGCCGTCCCAGGATCGTGCGG TTGCTCGTTGACGCTGGAGCAGATACGACATCGACCGTTCGAGTCACGAA CTTGAACGGAGGGGTGGAGTACAACGACACACCTCTGGCTGTCACAACCT CGTTCCTCCGCGAGAAGGTTGTAGACGGCAAACCCGCTACGGAGGAGCAG CTGCATAGGCTGCAGGCCATCCGTCGCTTGCTGTTGCAAGTCGACGCAGT CCATGCGGTGTCTTTGTTGTGGCCAAGCGATGCCCCCTCCATCGTCCATG CTGTAGAGAGGTCCTGTGGTCCCGAGCCGCGTAGGCCACCGCTGAGCCTG ACGTTGCCAATCCTGAAGCGACGGGCAAAGAGACGTCACGCGTTTGTCGC ATCACTCTTGAGGTGAGGAGAGTGATATGTCATTGAACTTTCGACATGGC GCTTTCTGTGGACAGCACCGTCCCCCGGTCTTCTGTTGTTGATCGAGGCT TGCGGAGTATTGGCCAAGAAACAAGCACCTATTTCTATCGCGTAGTTCTT GCTTCGGCGGGCCAATGGCTGTTGAAATTATTGAGGGTTGTCGTTATCAG TTATTGGTGATGAGTGCTGCGTACAAGAAAAACGTTGTGGCCATTCGGGA GTTGCTTTCTGGGTTCTTGCGGCAGTGTTTCTCATGGGTTGGTTGACCCC AGGTACCGGGAAAATTGTGTTTTCATCGGTATGACTTCACGTTGCGGTAG GCCCTACCCTGAGAACTCAGAAGACTGTAGGACCTCGTGAATCAGAAACA CAGGAGCGTCCGCAGATGATGCCATCGGGAGCATGGACTCGAAGATGAGT ATTGCGCAGCACACCAGCCACCTCCTCCGCATAATACTAGGAAACTACGA AACTACAAACCTTGTAGACCCAAAATAGGTAGTTTTGGCCTTTCTGCTCG TCCGTACCTTGAGCTCCTAAACATACAATTGCCCATGCGATCGTATCTTC ACCTGTTACGTGGCACGTCGATCGTTCCGGTACGAACAATGTGAAACGTT TGCCGAATTCGACCGTTTCCTGTGTGGGGACCACCTTCATGAAGGTACAA TCTCCCCAACGTTTGTCGAGGACGATCCCCTCTTTCCATATTGGCGTTCG ACGAAGCATTTTCTCCTAGTCGAATTTGTATTCGCAGTAGCACAAACAGC ATGACCTTGGTACAAAAACCCTGTTCACCCTCCTCCCGGCTCGAGTTTTT TCGGGGGAAAGGAAAAAATCACCCATAGCAGTGGTTTCACTGAGGTCTAA GTGGGGCATCTCAACCCGGCATCACCAGCGCGGTCTGTGGATCTTGCAGT GTGGGTGGTTTGGGCCTCAGTTGCCAAACTACCAAGTTCTCTTGGTGGCG CTATCTGTTTGCCTCGCCGGTTTCTTGTTCTTGTATTGTTATTGCCGTTG TTCAGCCAGAAGCAACTGCTGTCACGTTTACCCTCGCTCCTGCTTCAACC GTTCATTGTCCTGGGTGTTCCGTTTCAAGCTTTGACCCCGAATCGCGTGC TTACTTGCAGGCATTCGGTGAAGCCTTGACTGGGATGTACTACAATAGCG GCGGGCGCGAGATTGCGGTGTTCGTCACCCTCTCTCTGCCGCGCGAGGGA TTACAACCTTGACTGCTGTTCAGGAGTTCTCCGATATCCAGCGGGCGCGG CTCACGAAGAGCTGCTCTTTCCAAGGAATAGACAGGGACCTTTTGCTTGG AAAGTTTGGGCGAACCTGTTGTCACATGTTTCTGACTTTGTATATTCCGT AGTTGGTGCGAACGTAGGAAAACCAAGATCCGTTTCATCCCCTTTTGGCG AAAAATGAAAACGTTAAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1324:19790..22608-

>mRNA_E-siliculosus-1a_F_contig1324.1969.1 ID=mRNA_E-siliculosus-1a_F_contig1324.1969.1|Name=mRNA_E-siliculosus-1a_F_contig1324.1969.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2118bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1324:19790..22608- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTGACCAACGCCGGTGCCGACCTCGAAGTCGTCGCGGGATCCGACGG
CTTGACACCGCTTCACGCGGCCGTAAGAGGAGGAGACTCGGAGGCGGTGA
GAGCGTTGATCGAGGCAGGCGCGAATCCCAACAGTCAAACGCCAAGCGGG
GTGACTGTTGGTATGGGTTTTCTTTCATTACGAGCCGTGACACCACTGCA
CGTCGCGGCTGCAAAAGGACGCACGGGTGCGTTGAGGGAACTGCTTCGTG
CTAAGGCGAACCCAGCCGCGAGTGCAATTTCGACATTGAGGTCATCGCCA
TACGGGACAACTGTCGTTCCACTGGACATAGCTGCCTGCGCCGGGTACTC
GGACGTGGTGCGCGAGCTAGTTGAGGAGGTTGGGATTGAACGTTGTGATG
CTACAAATGCCGGGGCACAAGCTCTCCACCTTGCCGCAATGAACCAGCAC
ATGGACATTATGGCCATCCTGACCGGAGCCGGCGTGCTCGACGCGATGGG
CTATGTTCTCCTTGGAACCGCCGGATTGGGCCGTGAGGCATCCGTCCAGT
TTCTCTTGCGGCAGCGGCGCAAGGAGAGTGAAATGAGCGTTCATGCGTAC
GCTAACTCCAGCGACGGTTCCGGCATGACACCCCTGAGTTGCAGTGTTGA
GTGGTGCTGCCGTCCCAGGATCGTGCGGTTGCTCGTTGACGCTGGAGCAG
ATACGACATCGACCGTTCGAGTCACGAACTTGAACGGAGGGGTGGAGTAC
AACGACACACCTCTGGCTGTCACAACCTCGTTCCTCCGCGAGAAGGTTGT
AGACGGCAAACCCGCTACGGAGGAGCAGCTGCATAGGCTGCAGGCCATCC
GTCGCTTGCTGTTGCAAGTCGACGCAGTCCATGCGGTGTCTTTGTTGTGG
CCAAGCGATGCCCCCTCCATCGTCCATGCTGTAGAGAGGTCCTGTGGTCC
CGAGCCGCGTAGGCCACCGCTGAGCCTGACGTTGCCAATCCTGAAGCGAC
GGGCAAAGAGACGTCACGCGTTTGTCGCATCACTCTTGAGATGTTGACCA
ACGCCGGTGCCGACCTCGAAGTCGTCGCGGGATCCGACGGCTTGACACCG
CTTCACGCGGCCGTAAGAGGAGGAGACTCGGAGGCGGTGAGAGCGTTGAT
CGAGGCAGGCGCGAATCCCAACAGTCAAACGCCAAGCGGGGTGACTGTTG
GTATGGGTTTTCTTTCATTACGAGCCGTGACACCACTGCACGTCGCGGCT
GCAAAAGGACGCACGGGTGCGTTGAGGGAACTGCTTCGTGCTAAGGCGAA
CCCAGCCGCGAGTGCAATTTCGACATTGAGGTCATCGCCATACGGGACAA
CTGTCGTTCCACTGGACATAGCTGCCTGCGCCGGGTACTCGGACGTGGTG
CGCGAGCTAGTTGAGGAGGTTGGGATTGAACGTTGTGATGCTACAAATGC
CGGGGCACAAGCTCTCCACCTTGCCGCAATGAACCAGCACATGGACATTA
TGGCCATCCTGACCGGAGCCGGCGTGCTCGACGCGATGGGCTATGTTCTC
CTTGGAACCGCCGGATTGGGCCGTGAGGCATCCGTCCAGTTTCTCTTGCG
GCAGCGGCGCAAGGAGAGTGAAATGAGCGTTCATGCGTACGCTAACTCCA
GCGACGGTTCCGGCATGACACCCCTGAGTTGCAGTGTTGAGTGGTGCTGC
CGTCCCAGGATCGTGCGGTTGCTCGTTGACGCTGGAGCAGATACGACATC
GACCGTTCGAGTCACGAACTTGAACGGAGGGGTGGAGTACAACGACACAC
CTCTGGCTGTCACAACCTCGTTCCTCCGCGAGAAGGTTGTAGACGGCAAA
CCCGCTACGGAGGAGCAGCTGCATAGGCTGCAGGCCATCCGTCGCTTGCT
GTTGCAAGTCGACGCAGTCCATGCGGTGTCTTTGTTGTGGCCAAGCGATG
CCCCCTCCATCGTCCATGCTGTAGAGAGGTCCTGTGGTCCCGAGCCGCGT
AGGCCACCGCTGAGCCTGACGTTGCCAATCCTGAAGCGACGGGCAAAGAG
ACGTCACGCGTTTGTCGCATCACTCTTGAGGCATTCGGTGAAGCCTTGAG
CATTCGGTGAAGCCTTGA
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