mRNA_E-siliculosus-1a_F_contig1322.1957.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: D7FY54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY54_ECTSI) HSP 1 Score: 176 bits (446), Expect = 4.600e-55 Identity = 84/109 (77.06%), Postives = 89/109 (81.65%), Query Frame = 1
Query: 1 VKRIPFNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGDEPIKTTHQLFGKFLALSPDEPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
V+RIPF+PRKS D LAEFIRA I L +VPGI TK LA GDEPIKTTHQLFGKFLALSPDEPDC+EHCN FK+WLQDKNVGNG LN IVEAIAEK QTWIPG
Sbjct: 4 VERIPFHPRKSVIRDETLAEFIRAGITGTLTEVPGIGVATKKALAEGDEPIKTTHQLFGKFLALSPDEPDCEEHCNSFKFWLQDKNVGNGQLNSIVEAIAEKAQTWIPG 112
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: A0A6H5JXL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXL8_9PHAE) HSP 1 Score: 164 bits (415), Expect = 2.510e-50 Identity = 78/107 (72.90%), Postives = 85/107 (79.44%), Query Frame = 1
Query: 7 RIPFNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGDEPIKTTHQLFGKFLALSPDEPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
R PF+PR+S TSDN+LAEFI PI +VPGI +T LA GDEPI THQLFG FLALSPDEPDC EHCNRFKYWLQDKNVG L++IVEAIAEKTQTWIPG
Sbjct: 7 RTPFHPRRSTTSDNQLAEFIAGPITGITTEVPGIGLVTMETLARGDEPINRTHQLFGIFLALSPDEPDCAEHCNRFKYWLQDKNVGPRFLDEIVEAIAEKTQTWIPG 113
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: D7FY53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY53_ECTSI) HSP 1 Score: 156 bits (395), Expect = 2.110e-47 Identity = 78/110 (70.91%), Postives = 86/110 (78.18%), Query Frame = 1
Query: 1 VKRIPFNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGDEPIKTTHQLFGKFLALSPDEPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPGE 330
V+RIP+ + T D+ LAEFIRA I+ NL +VP IA T ELA GDEPIKTTHQL GKFLALSPDEPD EHCNRFKYWLQDKNV N LN+IVEAIAEKT+ IPGE
Sbjct: 5 VERIPYCATTTTTRDDALAEFIRAKIEGNLSEVPSIAEATTKELAKGDEPIKTTHQLIGKFLALSPDEPDGVEHCNRFKYWLQDKNVANHLLNNIVEAIAEKTECLIPGE 114
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: D7FY55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY55_ECTSI) HSP 1 Score: 114 bits (286), Expect = 1.100e-30 Identity = 59/104 (56.73%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 16 FNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGDEPIKTTHQLFGKFLALSPDEPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
F+PR+S T+D LA FIRAPI L +VP I+ T LA G EPI THQL GKFLALSP P+C EHC+RF WL KNV +N+IVEAIAEK + + G
Sbjct: 13 FHPRRSTTTDATLAGFIRAPITGVLTEVPFISGGTVQALAGGSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKNVAGTLVNNIVEAIAEKVEVMMTG 116
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: D7FQ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI) HSP 1 Score: 103 bits (256), Expect = 4.020e-26 Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 10 IPFNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELA--MGDEPIKTTHQLFGKFLAL-SPD----EPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
+ ++P++SK SD+KLAEFIR+ + +L +VPGIA LA GD+ + T+QL GKFLAL PD E D EHC++F YWLQ K + N + + IV AIAEK TWIPG
Sbjct: 4 VGYDPKRSKVSDDKLAEFIRSAVTGDLTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWYWLQAKGI-NSNRSGIVNAIAEKVNTWIPG 115
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: A0A835Z4N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N7_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 2.400e-22 Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = 1
Query: 16 FNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGD--EPIKTTHQLFGKFLALSPDEPDCK-----EHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
++P++SK +D KLAEFIR PI L +VPGI +LA G+ + T+QL GKFL+L + K EHC+RF YWL++ + + + IV AIAEK TWIPG
Sbjct: 7 YDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISS-YRSGIVNAIAEKCNTWIPG 116
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: A0A8J2SQQ2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQQ2_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.470e-21 Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 16 FNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGD---EPIKTTHQLFGKFLALSPDEPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
++ +K+K +++KLA+++R + +LEQVPGI LA D + ++TT+QL GKFL+L C EHC+ F YWLQ K V N N+IV AIAEK + ++PG
Sbjct: 7 YSAKKTKINEDKLADWLREQVTGDLEQVPGIGPANVKLLAATDRVPDKVETTYQLIGKFLSLKAAGTTCVEHCDMFYYWLQAKGV-NAGRNNIVLAIAEKCEVFLPG 112
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: D7FY52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY52_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 4.000e-21 Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 1
Query: 202 EPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
+PDC EHCNRFKYWLQDKNVG GSLN+IVEAIAEKT+TWIPG
Sbjct: 23 QPDCVEHCNRFKYWLQDKNVGIGSLNNIVEAIAEKTETWIPG 64
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: K0QZN8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZN8_THAOC) HSP 1 Score: 86.3 bits (212), Expect = 1.990e-19 Identity = 49/111 (44.14%), Postives = 68/111 (61.26%), Query Frame = 1
Query: 16 FNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMG--DEPIKTTHQLFGKFLALS-PDEPDCK----EHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
++P++S+ SD+ L +FIRA + ++ +VPGI +LA G DE I T+QL GKFL L PD D K EHC +F YWLQDK + + + IV+AIA K +PG
Sbjct: 6 YDPKRSRVSDDSLMDFIRAQVQGDITEVPGIGPAAAKKLAEGEHDECITNTYQLIGKFLMLKGPDTDDNKVESMEHCEKFWYWLQDKQI-SAHRSAIVKAIAMKVNGLLPG 115
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: F0WQ47_9STRA (Uncharacterized protein AlNc14C194G8527 n=2 Tax=Albugo TaxID=65356 RepID=F0WQ47_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 4.950e-19 Identity = 44/113 (38.94%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 16 FNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGDEP--IKTTHQLFGKFLALSPDEPD-------CKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
++P+KS+ ++++LA+F+RAP+ +L +VPGI + ++LA G+E + T+QL GKFL L ++ + C HC+ F YWL+ K + + IV AIAEK T +PG
Sbjct: 5 YDPQKSRIAEDRLADFLRAPLTGDLLEVPGIGSAAISKLASGEEEDRVCNTYQLIGKFLMLKKNDEENEEELIECSAHCDAFWYWLKSKQI-TAYRSGIVMAIAEKVNTMLPG 116 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1322.1957.1 >prot_E-siliculosus-1a_F_contig1322.1957.1 ID=prot_E-siliculosus-1a_F_contig1322.1957.1|Name=mRNA_E-siliculosus-1a_F_contig1322.1957.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=112bp VKRIPFNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGDEPback to top mRNA from alignment at E-siliculosus-1a_F_contig1322:23489..24756+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1322.1957.1 ID=mRNA_E-siliculosus-1a_F_contig1322.1957.1|Name=mRNA_E-siliculosus-1a_F_contig1322.1957.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1268bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1322:23489..24756+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1322:23489..24756+ >mRNA_E-siliculosus-1a_F_contig1322.1957.1 ID=mRNA_E-siliculosus-1a_F_contig1322.1957.1|Name=mRNA_E-siliculosus-1a_F_contig1322.1957.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1322:23489..24756+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |