mRNA_E-siliculosus-1a_F_contig1322.1957.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1322.1957.1
Unique NamemRNA_E-siliculosus-1a_F_contig1322.1957.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: D7FY54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY54_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 4.600e-55
Identity = 84/109 (77.06%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 VKRIPFNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGDEPIKTTHQLFGKFLALSPDEPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
            V+RIPF+PRKS   D  LAEFIRA I   L +VPGI   TK  LA GDEPIKTTHQLFGKFLALSPDEPDC+EHCN FK+WLQDKNVGNG LN IVEAIAEK QTWIPG
Sbjct:    4 VERIPFHPRKSVIRDETLAEFIRAGITGTLTEVPGIGVATKKALAEGDEPIKTTHQLFGKFLALSPDEPDCEEHCNSFKFWLQDKNVGNGQLNSIVEAIAEKAQTWIPG 112          
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: A0A6H5JXL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXL8_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.510e-50
Identity = 78/107 (72.90%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    7 RIPFNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGDEPIKTTHQLFGKFLALSPDEPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
            R PF+PR+S TSDN+LAEFI  PI     +VPGI  +T   LA GDEPI  THQLFG FLALSPDEPDC EHCNRFKYWLQDKNVG   L++IVEAIAEKTQTWIPG
Sbjct:    7 RTPFHPRRSTTSDNQLAEFIAGPITGITTEVPGIGLVTMETLARGDEPINRTHQLFGIFLALSPDEPDCAEHCNRFKYWLQDKNVGPRFLDEIVEAIAEKTQTWIPG 113          
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: D7FY53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY53_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 2.110e-47
Identity = 78/110 (70.91%), Postives = 86/110 (78.18%), Query Frame = 1
Query:    1 VKRIPFNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGDEPIKTTHQLFGKFLALSPDEPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPGE 330
            V+RIP+    + T D+ LAEFIRA I+ NL +VP IA  T  ELA GDEPIKTTHQL GKFLALSPDEPD  EHCNRFKYWLQDKNV N  LN+IVEAIAEKT+  IPGE
Sbjct:    5 VERIPYCATTTTTRDDALAEFIRAKIEGNLSEVPSIAEATTKELAKGDEPIKTTHQLIGKFLALSPDEPDGVEHCNRFKYWLQDKNVANHLLNNIVEAIAEKTECLIPGE 114          
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: D7FY55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY55_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.100e-30
Identity = 59/104 (56.73%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   16 FNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGDEPIKTTHQLFGKFLALSPDEPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
            F+PR+S T+D  LA FIRAPI   L +VP I+  T   LA G EPI  THQL GKFLALSP  P+C EHC+RF  WL  KNV    +N+IVEAIAEK +  + G
Sbjct:   13 FHPRRSTTTDATLAGFIRAPITGVLTEVPFISGGTVQALAGGSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKNVAGTLVNNIVEAIAEKVEVMMTG 116          
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: D7FQ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 4.020e-26
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   10 IPFNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELA--MGDEPIKTTHQLFGKFLAL-SPD----EPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
            + ++P++SK SD+KLAEFIR+ +  +L +VPGIA      LA   GD+ +  T+QL GKFLAL  PD    E D  EHC++F YWLQ K + N + + IV AIAEK  TWIPG
Sbjct:    4 VGYDPKRSKVSDDKLAEFIRSAVTGDLTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWYWLQAKGI-NSNRSGIVNAIAEKVNTWIPG 115          
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: A0A835Z4N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.400e-22
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   16 FNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGD--EPIKTTHQLFGKFLALSPDEPDCK-----EHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
            ++P++SK +D KLAEFIR PI   L +VPGI      +LA G+    +  T+QL GKFL+L   +   K     EHC+RF YWL++  + +   + IV AIAEK  TWIPG
Sbjct:    7 YDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISS-YRSGIVNAIAEKCNTWIPG 116          
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: A0A8J2SQQ2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQQ2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.470e-21
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   16 FNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGD---EPIKTTHQLFGKFLALSPDEPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
            ++ +K+K +++KLA+++R  +  +LEQVPGI       LA  D   + ++TT+QL GKFL+L      C EHC+ F YWLQ K V N   N+IV AIAEK + ++PG
Sbjct:    7 YSAKKTKINEDKLADWLREQVTGDLEQVPGIGPANVKLLAATDRVPDKVETTYQLIGKFLSLKAAGTTCVEHCDMFYYWLQAKGV-NAGRNNIVLAIAEKCEVFLPG 112          
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: D7FY52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY52_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 4.000e-21
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 1
Query:  202 EPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
            +PDC EHCNRFKYWLQDKNVG GSLN+IVEAIAEKT+TWIPG
Sbjct:   23 QPDCVEHCNRFKYWLQDKNVGIGSLNNIVEAIAEKTETWIPG 64          
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: K0QZN8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZN8_THAOC)

HSP 1 Score: 86.3 bits (212), Expect = 1.990e-19
Identity = 49/111 (44.14%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   16 FNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMG--DEPIKTTHQLFGKFLALS-PDEPDCK----EHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
            ++P++S+ SD+ L +FIRA +  ++ +VPGI      +LA G  DE I  T+QL GKFL L  PD  D K    EHC +F YWLQDK + +   + IV+AIA K    +PG
Sbjct:    6 YDPKRSRVSDDSLMDFIRAQVQGDITEVPGIGPAAAKKLAEGEHDECITNTYQLIGKFLMLKGPDTDDNKVESMEHCEKFWYWLQDKQI-SAHRSAIVKAIAMKVNGLLPG 115          
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Match: F0WQ47_9STRA (Uncharacterized protein AlNc14C194G8527 n=2 Tax=Albugo TaxID=65356 RepID=F0WQ47_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.950e-19
Identity = 44/113 (38.94%), Postives = 71/113 (62.83%), Query Frame = 1
Query:   16 FNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGDEP--IKTTHQLFGKFLALSPDEPD-------CKEHCNRFKYWLQDKNVGNGSLNDIVEAIAEKTQTWIPG 327
            ++P+KS+ ++++LA+F+RAP+  +L +VPGI +   ++LA G+E   +  T+QL GKFL L  ++ +       C  HC+ F YWL+ K +     + IV AIAEK  T +PG
Sbjct:    5 YDPQKSRIAEDRLADFLRAPLTGDLLEVPGIGSAAISKLASGEEEDRVCNTYQLIGKFLMLKKNDEENEEELIECSAHCDAFWYWLKSKQI-TAYRSGIVMAIAEKVNTMLPG 116          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1322.1957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FY54_ECTSI4.600e-5577.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXL8_9PHAE2.510e-5072.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY53_ECTSI2.110e-4770.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FY55_ECTSI1.100e-3056.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQ44_ECTSI4.020e-2650.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4N7_9STRA2.400e-2245.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SQQ2_9STRA2.470e-2143.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D7FY52_ECTSI4.000e-2188.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K0QZN8_THAOC1.990e-1944.14Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
F0WQ47_9STRA4.950e-1938.94Uncharacterized protein AlNc14C194G8527 n=2 Tax=Al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1322contigE-siliculosus-1a_F_contig1322:23489..24756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size336
Model size336
Exons3
Ec32 orthologEc-24_003770.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2ARS8@1,2RZN0@2759
Seed eggNOG ortholog2880.D7FQ44
Seed ortholog evalue4.7e-20
Seed ortholog score104.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1322.1957.1prot_E-siliculosus-1a_F_contig1322.1957.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1322 23489..24756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927844.6605823-CDS-E-siliculosus-1a_F_contig1322:23488..235841622927844.6605823-CDS-E-siliculosus-1a_F_contig1322:23488..23584Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1322 23489..23584 +
1696318704.7258642-CDS-E-siliculosus-1a_F_contig1322:23488..235841696318704.7258642-CDS-E-siliculosus-1a_F_contig1322:23488..23584Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1322 23489..23584 +
1622927844.6820383-CDS-E-siliculosus-1a_F_contig1322:23977..240851622927844.6820383-CDS-E-siliculosus-1a_F_contig1322:23977..24085Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1322 23978..24085 +
1696318704.7363625-CDS-E-siliculosus-1a_F_contig1322:23977..240851696318704.7363625-CDS-E-siliculosus-1a_F_contig1322:23977..24085Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1322 23978..24085 +
1622927844.6962445-CDS-E-siliculosus-1a_F_contig1322:24624..247561622927844.6962445-CDS-E-siliculosus-1a_F_contig1322:24624..24756Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1322 24625..24756 +
1696318704.7462287-CDS-E-siliculosus-1a_F_contig1322:24624..247561696318704.7462287-CDS-E-siliculosus-1a_F_contig1322:24624..24756Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1322 24625..24756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1322.1957.1

>prot_E-siliculosus-1a_F_contig1322.1957.1 ID=prot_E-siliculosus-1a_F_contig1322.1957.1|Name=mRNA_E-siliculosus-1a_F_contig1322.1957.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=112bp
VKRIPFNPRKSKTSDNKLAEFIRAPIDKNLEQVPGIATITKNELAMGDEP
IKTTHQLFGKFLALSPDEPDCKEHCNRFKYWLQDKNVGNGSLNDIVEAIA
EKTQTWIPGEL*
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mRNA from alignment at E-siliculosus-1a_F_contig1322:23489..24756+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1322.1957.1 ID=mRNA_E-siliculosus-1a_F_contig1322.1957.1|Name=mRNA_E-siliculosus-1a_F_contig1322.1957.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1268bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1322:23489..24756+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTAAAACGGATCCCGTTCAACCCGAGGAAATCCAAGACTTCTGACAACAA GCTCGCCGAATTCATCCGCGCTCCGATCGACAAGAACCTCGAACAGGTGA CGGCGTTGTAATGTAGGTTGCACTCATATCTCCGCTCTTCTGTGCCACGC GCGTGATCCAGACATTTCAAGCAACAAGGTCACTTAATCCATGACCTCGA GTCAAGACTGCAACTTGATGTACGATGTGCACGACAGTACGTGTATGTTA TACGTCCTACTTTGGCAAGAAAAGTCGCGTTGAGCATGATCATCACGCAG TCCATTCATTGGCGCCTGCTTGGCACAACCCTTGTGTCTCTGAATGGTTC GTTCTATGTAGAACATACAGTCGCCGGCAAAACGTCCACCTCGAGTGTGC GACAATACGTTGCCATACTGTTGTGTGTGCTCGTTTATGCGAACATTACC CGTGAACATTGTTTTACCATCGGTGCGGATCAAACAAAGGTACCCGGCAT CGCAACCATCACCAAGAACGAACTCGCTATGGGAGACGAACCCATCAAGA CAACGCACCAGCTGTTTGGAAAATTTCTGGCGCTCTCCCCTGATGAGGTG TGTCTACGGGTGTTGTGTGCATCGAGCCGTACCACCATGATGTGAATGAA AATGACAGGAGTCACGAGAGATAAGTTGTTTGGTCTACTTTCAATGGCCT TGGACGAAATATATACATCAATATAGCCCCAAAATTTTCTTCTCTTCTGT GGCGGCTTTGTACACACGCACCTATAGCGTAGTTTAGATTGCGTCCACCC AAACAAATCAGTCATCACATACCGAAATGAATCCTTCTCTACTACATCGA TTTTTTTCCGGGAAAAGAATAATCATATGTGAAGTTGGCTCAACTCGTCT CGAGGAGGCACACGGTTTGGAATGTGTCACCGAAAATATATTCGTAGTTT ATTCTCTTTGCAAACATGCAGAACTAAACATCGCACTGTAGTTGTAGCGC CGCCAATGAAATCCTGAAGCGCCAAATATGAGTGAGGTGGGCGACGTTCA CTTTTCGATTCCTTCATTGCCGAACATATCCAACATTGCCTGTAGTACGC ATCATGCCGTTTTCCTGTCCCTACTGTGCGTGTTAGCCGGACTGCAAAGA GCATTGCAACAGGTTTAAGTATTGGCTCCAAGACAAGAACGTCGGCAATG GATCGCTGAACGACATTGTCGAGGCGATTGCCGAGAAGACGCAAACTTGG ATCCCTGGTGAGTTGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1322:23489..24756+

>mRNA_E-siliculosus-1a_F_contig1322.1957.1 ID=mRNA_E-siliculosus-1a_F_contig1322.1957.1|Name=mRNA_E-siliculosus-1a_F_contig1322.1957.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1322:23489..24756+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTAAAACGGATCCCGTTCAACCCGAGGAAATCCAAGACTTCTGACAACAA
GCTCGCCGAATTCATCCGCGCTCCGATCGACAAGAACCTCGAACAGGTAA
AACGGATCCCGTTCAACCCGAGGAAATCCAAGACTTCTGACAACAAGCTC
GCCGAATTCATCCGCGCTCCGATCGACAAGAACCTCGAACAGGTACCCGG
CATCGCAACCATCACCAAGAACGAACTCGCTATGGGAGACGAACCCATCA
AGACAACGCACCAGCTGTTTGGAAAATTTCTGGCGCTCTCCCCTGATGAG
GTACCCGGCATCGCAACCATCACCAAGAACGAACTCGCTATGGGAGACGA
ACCCATCAAGACAACGCACCAGCTGTTTGGAAAATTTCTGGCGCTCTCCC
CTGATGAGCCGGACTGCAAAGAGCATTGCAACAGGTTTAAGTATTGGCTC
CAAGACAAGAACGTCGGCAATGGATCGCTGAACGACATTGTCGAGGCGAT
TGCCGAGAAGACGCAAACTTGGATCCCTGGTGAGTTGTAGCCGGACTGCA
AAGAGCATTGCAACAGGTTTAAGTATTGGCTCCAAGACAAGAACGTCGGC
AATGGATCGCTGAACGACATTGTCGAGGCGATTGCCGAGAAGACGCAAAC
TTGGATCCCTGGTGAGTTGTAG
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