mRNA_E-siliculosus-1a_F_contig1312.1912.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1312.1912.1 vs. uniprot
Match: D7FK93_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK93_ECTSI) HSP 1 Score: 635 bits (1639), Expect = 3.790e-217 Identity = 350/376 (93.09%), Postives = 356/376 (94.68%), Query Frame = 2
Query: 47 MARCCKVVAVLLVVFATASGFLSGAPPGPPRGKGKAPQPDVAKNKVDVKPRTTADKTLVGPSPTIETLTVGSPQHGLLIGSEQARAIALEAATSKTVPKATTLEALHSLAHSSELELTTGLSAPLPLQTMEGLWRLCFCEGDFLPGIDVDKHGYVARGQNVEILFDPEGEKITLASSGLGSSLPAAMQGGLSYTPETQTVTGTFEKAGMESLDLRAFLIDDDALGFHTVSEDKHGILLFHAEKSKAAAARLSKAVSIAASSVSEAEKEVXXXXXXXXXXEVAGKDLLDLVLDVQLASEEDIHEDKRLAVQETGRETGSFNTFIRYLEKEGGMIYAVVAGPILFSYMKYYSPVASSKATAAAIVMVETVKHILKANA 1174
MARCCKVVAVLLVV ATASGFLSGAPPGPPRGKGKAPQPDVAKNKVD KPRT ADKTLVGPSPTIET+TVGSPQHGL IGSEQARAIALEAATSKTVPKATTLEALHSLAHSSELELTTGLSAPLPLQTMEGLWRLCFCEGDFLPGIDVDKHGYVARGQNVEILFDPEGEKITLASSGLGSSLPAAM+GGLSYTPETQTVTGTFE+ G+ESLDLRAF+IDDDALGFHTVSEDKHGILLFHAEKSKAAAARLSKAV XXXXXXXXXX VAGKDLLDLVLDVQLASEED+HEDKRLAVQETGRETGSFNTFIRYLEKEGGMIYAVVAGPILFSYMKYYSPVASSKATAAAIVMVETVKHILKANA
Sbjct: 1 MARCCKVVAVLLVVLATASGFLSGAPPGPPRGKGKAPQPDVAKNKVDGKPRTAADKTLVGPSPTIETITVGSPQHGLFIGSEQARAIALEAATSKTVPKATTLEALHSLAHSSELELTTGLSAPLPLQTMEGLWRLCFCEGDFLPGIDVDKHGYVARGQNVEILFDPEGEKITLASSGLGSSLPAAMEGGLSYTPETQTVTGTFEETGIESLDLRAFMIDDDALGFHTVSEDKHGILLFHAEKSKAAAARLSKAVXXXXXXXXXXXXXXXXXXXXXXXXXVAGKDLLDLVLDVQLASEEDVHEDKRLAVQETGRETGSFNTFIRYLEKEGGMIYAVVAGPILFSYMKYYSPVASSKATAAAIVMVETVKHILKANA 376 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1312.1912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1312.1912.1 >prot_E-siliculosus-1a_F_contig1312.1912.1 ID=prot_E-siliculosus-1a_F_contig1312.1912.1|Name=mRNA_E-siliculosus-1a_F_contig1312.1912.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=377bp MARCCKVVAVLLVVFATASGFLSGAPPGPPRGKGKAPQPDVAKNKVDVKPback to top mRNA from alignment at E-siliculosus-1a_F_contig1312:25419..33437- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1312.1912.1 ID=mRNA_E-siliculosus-1a_F_contig1312.1912.1|Name=mRNA_E-siliculosus-1a_F_contig1312.1912.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8019bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1312:25419..33437- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1312:25419..33437- >mRNA_E-siliculosus-1a_F_contig1312.1912.1 ID=mRNA_E-siliculosus-1a_F_contig1312.1912.1|Name=mRNA_E-siliculosus-1a_F_contig1312.1912.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2262bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1312:25419..33437- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |