mRNA_E-siliculosus-1a_F_contig1312.1910.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1312.1910.1 vs. uniprot
Match: D7FK92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK92_ECTSI) HSP 1 Score: 845 bits (2182), Expect = 4.470e-302 Identity = 478/509 (93.91%), Postives = 481/509 (94.50%), Query Frame = 1
Query: 97 MALQSVRGDVDTREPASMKFSRGQLVDMKKLQQEAARAEHVEKCNRKLVDKMMMIMQGLCGTIVSEQTFPDFNPGTLNYRIRQRELVRIDRDNLALMHRLETASSGYNKALVKPKYFQQPHMGLFPRSEQSVKSAASKSRKRIRPGGPPTAPSCGSEGRAPSPSFRAGCGGDGGGRSDDGGLGWGASVTSALTEPSSFPTTTLGKFHDASSPASVRKNSGKWRESGADAHASELRIDEPGDLGGGXXXXXXXVDGGSVYPATGLARTPHPPSISSRATCGSLSGKASSKLRKCRRLARPTAAKPGATVFQGGVRIGDDYAIVIVTRATEGFGDNGTQGFRIKAYFPLSVSVYTLGVSAEHLPVFTAGSHTAVRRLFQTGDKSRGKWEGVVACLELRPSTGVAGIRKSVESVQSVAGPTPXXXXXXXXXXXXXXXXXXXXAAGVPSGGMDGTEERVGGASAGTAGAATAATVPMAVGVEMVLVPPEDAPVLIVQRLVRGWLSRQQYQSLK 1623
MALQSVRGDVDTREPASMKFSRGQLVDMKKLQQEAARAEHVEKCNRKLVDKMMMIMQGLCGTIVSEQTFPDFNPGTLNYRIRQRELVRIDRDNLALMHRLETASSGYNKALVKPKYF+QPHMGLFPRSEQSVKSA SKSRKRIRPGGPPTAPSCGSEGRAPSPSFRAGCGGDGGGRSDDGGLGWGASVTSALTEPSSFPTTTLGKFHDASSPASVRKNSG WRESGADAHASELRIDEPGDLGGG XXXXXX SV+PATGLARTPHPPSISSRATCGSLSGKASSKLRKCRRLARPTAAKPGATVFQGGVRIGDDYAIVIVTRATEGFGDNGTQGFRIKAYFPLSVSVYTLGVSAEHLPVFTAGSHTAVRRLFQTGDKSRGKWEGVVACLELRPST VAG+RK VESVQSV GPTPXXXXXXXXXXXXXXXXXXXXAAGVPSGGMDGTEERVG VGVEMVLVPPEDAPVLIVQRLVRGWLSRQQYQSLK
Sbjct: 1 MALQSVRGDVDTREPASMKFSRGQLVDMKKLQQEAARAEHVEKCNRKLVDKMMMIMQGLCGTIVSEQTFPDFNPGTLNYRIRQRELVRIDRDNLALMHRLETASSGYNKALVKPKYFRQPHMGLFPRSEQSVKSAGSKSRKRIRPGGPPTAPSCGSEGRAPSPSFRAGCGGDGGGRSDDGGLGWGASVTSALTEPSSFPTTTLGKFHDASSPASVRKNSGGWRESGADAHASELRIDEPGDLGGGDXXXXXXXX--SVHPATGLARTPHPPSISSRATCGSLSGKASSKLRKCRRLARPTAAKPGATVFQGGVRIGDDYAIVIVTRATEGFGDNGTQGFRIKAYFPLSVSVYTLGVSAEHLPVFTAGSHTAVRRLFQTGDKSRGKWEGVVACLELRPSTDVAGMRKPVESVQSVEGPTPXXXXXXXXXXXXXXXXXXXXAAGVPSGGMDGTEERVGAPXXXXXXXXXXXXXXXXVGVEMVLVPPEDAPVLIVQRLVRGWLSRQQYQSLK 507
BLAST of mRNA_E-siliculosus-1a_F_contig1312.1910.1 vs. uniprot
Match: A0A210QT93_MIZYE (Uncharacterized protein n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QT93_MIZYE) HSP 1 Score: 54.7 bits (130), Expect = 6.610e-5 Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 1
Query: 85 KAHRMALQSVRGDVDTREPASMKFSRGQLVDMKKLQQEAARAEHVEKCNRKLVDKMMMIMQGLCGTIVSEQTFPDFNPGTLNYRIRQRELVRIDRDNLALMHRLETASSGYN 420
K HR + + +D + P + + +KKLQ E R VE+ NR L+++M IM+ G V + D+ +LN RQREL+RI +NLA++ RL + YN
Sbjct: 26 KTHRKKVVGAQPMIDNKPPKTYMHLH---IKLKKLQMEGGRLASVERDNRILLERMAHIMRS--GGRVHSRENKDYMRKSLNKTKRQRELLRITHENLAILRRLTSKEPHYN 132 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1312.1910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1312.1910.1 >prot_E-siliculosus-1a_F_contig1312.1910.1 ID=prot_E-siliculosus-1a_F_contig1312.1910.1|Name=mRNA_E-siliculosus-1a_F_contig1312.1910.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=543bp MSVPTLGTKALFLPNRKGTLKRDNNRRAKAHRMALQSVRGDVDTREPASMback to top mRNA from alignment at E-siliculosus-1a_F_contig1312:12232..19177+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1312.1910.1 ID=mRNA_E-siliculosus-1a_F_contig1312.1910.1|Name=mRNA_E-siliculosus-1a_F_contig1312.1910.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6946bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1312:12232..19177+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1312:12232..19177+ >mRNA_E-siliculosus-1a_F_contig1312.1910.1 ID=mRNA_E-siliculosus-1a_F_contig1312.1910.1|Name=mRNA_E-siliculosus-1a_F_contig1312.1910.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1312:12232..19177+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |