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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1312.1909.1 vs. uniprot
Match: D7FK91_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK91_ECTSI) HSP 1 Score: 609 bits (1571), Expect = 1.690e-216 Identity = 328/391 (83.89%), Postives = 333/391 (85.17%), Query Frame = 3
Query: 81 MTGWNNVAFMHLCLATYFSPPDLVCLILTSRDALETYGNAETYRAVCKSYFGLAGRRGHLTRRQRGKKGVWGAGDGAKARLSLLWQERTRNNVLQLQNAHLLQQREHERRWVLQQAAAVMRRCAYGSRQQGSGCAHTKLRLWTSAHLVATKSSSRRSQERPASHHGVRCDRCKKGPITGSCFRCAAGCAATAVPNDTSTCPPHCGKSGVANGVGRGVRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGFGNGFYTLCEACFPHRHQFHPPHPFARLRPGFAEPRLSGPVLYEAVCGDCSFGSLILVRPLKAREAAPGDTGSGDGGDLWAVPVRVDSAGPLPLSQVKS 1253
MTGWNNVAFMHLCLATYFSPPDLVCLILTSRDAL+TYGNAETYRAVCKSYFGLAGRRGHLTRRQRGKKGVWGAGDGAKARLSLLWQERTRNNVLQLQNAHLLQQREHERRWVLQQAAAVMRRCAYGSRQQGSGCAHTKLRLWTSA+LVATKSSSRRSQERP SHHGVRCDRCKKGPITGSCFRCAAGC ATAVPNDTS CPPH GKSGVANGV RGVRRXXXXXXXXX XXXXXXXXXX CGFGNGFYTLCEACFP+RHQFHPPHPFARLRPGFAEPRLSGPVLYEAVCGDCSFGSLILVRPLKAREAAPGDTGSGDGGDLWAVPVRVDSAGPLPLSQ ++
Sbjct: 1 MTGWNNVAFMHLCLATYFSPPDLVCLILTSRDALDTYGNAETYRAVCKSYFGLAGRRGHLTRRQRGKKGVWGAGDGAKARLSLLWQERTRNNVLQLQNAHLLQQREHERRWVLQQAAAVMRRCAYGSRQQGSGCAHTKLRLWTSANLVATKSSSRRSQERPPSHHGVRCDRCKKGPITGSCFRCAAGCTATAVPNDTSKCPPHGGKSGVANGVSRGVRRXXXXXXXXXEKPSPLSTILPRSSGEAPAREERXXXXXXXXXX-----------------------------CGFGNGFYTLCEACFPYRHQFHPPHPFARLRPGFAEPRLSGPVLYEAVCGDCSFGSLILVRPLKAREAAPGDTGSGDGGDLWAVPVRVDSAGPLPLSQARN 362
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1287 |
| Model size | 1402 |
| Exons | 6 |
| Ec32 ortholog | Ec-17_003210.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1312.1909.1 >prot_E-siliculosus-1a_F_contig1312.1909.1 ID=prot_E-siliculosus-1a_F_contig1312.1909.1|Name=mRNA_E-siliculosus-1a_F_contig1312.1909.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=429bp
MTGWNNVAFMHLCLATYFSPPDLVCLILTSRDALETYGNAETYRAVCKSY
FGLAGRRGHLTRRQRGKKGVWGAGDGAKARLSLLWQERTRNNVLQLQNAH
LLQQREHERRWVLQQAAAVMRRCAYGSRQQGSGCAHTKLRLWTSAHLVAT
KSSSRRSQERPASHHGVRCDRCKKGPITGSCFRCAAGCAATAVPNDTSTC
PPHCGKSGVANGVGRGVRRRHHQQQQQQQQQHEKPSPPSTILPRSSGEAP
AREEREERTGGGRGGSSSGAQKKGHGGASGGGGGGGGGGGCGFGNGFYTL
CEACFPHRHQFHPPHPFARLRPGFAEPRLSGPVLYEAVCGDCSFGSLILV
RPLKAREAAPGDTGSGDGGDLWAVPVRVDSAGPLPLSQVKSRIAAGDRDD
NRGLAFASDNWQLQQDGRGVALESLDSP* back to topmRNA from alignment at E-siliculosus-1a_F_contig1312:7363..11828- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1312.1909.1 ID=mRNA_E-siliculosus-1a_F_contig1312.1909.1|Name=mRNA_E-siliculosus-1a_F_contig1312.1909.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4466bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1312:7363..11828- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACTCACCACTGCTGTGTGTGTCGGTGTACAGCAGTAGGCAGGAGAGTAG
TGTGCTACACCGAGACGAGAGTGTACCTGCATGACCGGCTGGAACAATGT
CGCCTTTATGCACCTGTGCTTGGCGACTTATTTCTCCCCGCCTGACCTGG
TGTGCCTGATACTCACCAGCAGAGACGCGTTGGAAACGTACGGGAACGCG
GAGACTTACCGAGCCGTATGCAAGTCGTACTTCGGACTTGCAGGCCGGCG
TGGACACCTCACTAGGAGGCAACGAGGGAAGAAAGGGGTATGGTGAGTCA
TTTCTAATCCCATTGTTGTGGAAGACGTGTTATATGCCTGGTTTTTCATG
TTCAAGAAGCCACCCCCCCCCTCCCCCCAAGCAGCCACGCGCCTTGCCTC
TGCTGCCATGTGTGTGCTTCCTTCCTTCTGTCGGTCTGTTCATGCTGTTG
AGCTGTTGTGGCATACGCTGGTTGTTCAGTTCATGCTTTTGCGTATGACT
GCTGAAAACAACTAAGGTGGGAGGGGTGCCAACAGCGACCGATACATGTT
CAGTATGACTCGACGACGTACGATGCATTTCGCAGCAAGACAAGGCACGC
TTTGAAATCGACCTTCAAGTACTGAGGTAATGATGTCAAACATGGTATGA
ACCTCGGCGGCATGTATAGGAGTCCTCCGTTGACGGGGAGACATGTGCAC
GCCTGTACACGTAGACTGCTGCTGATGTATCCTTGGTGTGTTCTTCGCAC
ACCCTGGGCGCCATGGCACAATGGACGCTACAATAACAGCAAGAGAGACG
AGACGAGTCTGGTACCAGGTCTCACGTGTCTCGCGATGTAACAGCTGATA
TACCCTCGTGTGTTGCGTGTTCTCTCTTGGTGCCACACCTATTTCTACGC
ACAGGCAATGTGTCGTAACACTAACGATTTTTGTTTCTTCATTGTATCCC
CCTTTCCCGCCGTGCGCTTCAGGGGTGCGGGGGATGGCGCAAAGGCGAGG
CTTAGTTTGTTGTGGCAGGAGCGAACGAGGAACAACGTTTTGCAGCTGCA
GAACGCCCACCTCTTGCAACAACGGGAGCATGAGCGGAGGTACGTGCGGT
TTAGAGAAAATTATGTCCTATCTACCAACTGATACGTAAATGGTTTGCAG
TGCGCCAGCACGAGTTCGTCAACACGACACTTTCTCAAAGGAAGAGGTTC
GACAATATGTATGCATACGTATTTTACGTGCCGTTCATTTTTCCTGGTGG
CCAGCTTTGCTGCCCTCCACGTTCCGTTGGCCGAACTCCTTGACCGGTGT
GATGATTCACTTGGTTTTATTGTGCGGACGTGCGGACCCGCGACACGATG
AAACGAAAGTTGGTTTGGATGGGTGTTTGCTCCGTCGTGTTGTCTTGGAG
TATCAAGAAACCCTACCAACAAAGTTATTTTTTTGTACATATTGTTCAGG
AATCGATACATCGTTCAACACAGACTTATTTTGGGCTACTGGTAGTCCGC
AACCGGCATGATGTATGTAGTTTGGCTCGTGCTGTACCTTCCTTTTTTAT
CAGATTGCGTGAAGTTCCCGTTGTTTTCCTTTCGACGTGCACAAGGTGGG
TTCTGCAGCAAGCGGCAGCGGTGATGCGAAGGTGCGCGTACGGTTCACGC
CAACAAGGCAGTGGCTGCGCTCACACCAAGCTCAGGTGGGACACTATGTT
TGCTTGACCCCGCTGTACATTTAAGCATCAACGAATTCCGCTTGCGTCTT
GCGATCAGTCGATCAATCTTGGTTGATCTTTGCGCGACACGAACAGCAAT
GTTTCCGTCGAAAGCTCTCTAGCATTATCTCTCGTTTGTGAGCAGCGGTC
AAAGAGAGCACCTGTGGGTTTTCGTCGCTTACCCTCTGCTGCTATTGTCG
TCGTCGTCGTTGTCGTCGTCGTTGTTGTTGTTTTGTTGTTGTTGTTGCCG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGTTTTTGGTGCTTTCCCTC
TGCTTGTATTGTGGTTGTGGTTGTGCCGAGTCCGGGCCAAACAATGAAAT
ATCCCTCCCCAGACCCCCCCTGCTCGACAAATCTCCGAGAAATATGGAGA
TAATATGAGCGGAAAATTTCCCGCACCGAAGGACAACCATGGGATGGGGA
AACGCGAAGAGGGTCCAGATGTCGGCAATTATCTCGACAAGAATGGAACG
GTGCCGCTTCCTTTCGAAAGGGATGGTTCATGATTCCCGCTCAATTGTAC
GAATGAAATATAGGCCCAATTAAGCAAGAAAAGAGTTACCCCCCCCGCCC
CCCGCCCCCCCCCGCCCCTTGCTATCTAGGCTTTGGACTTCCGCCCACCT
CGTCGCCACCAAGAGCTCCTCCCGCAGAAGCCAGGAGCGCCCCGCGTCTC
ACCACGGGGTGCGGTGCGACCGGTGCAAGAAGGGACCGATAACGGGGTCC
TGCTTCCGCTGCGCGGCAGGCTGCGCAGCAACGGCAGTGCCCAACGACAC
GAGCACGTGTCCGCCCCATTGTGGAAAAAGCGGCGTCGCCAACGGCGTTG
GCAGGGGCGTGAGGCGGCGCCACCATCAGCAGCAGCAGCAGCAGCAGCAG
CAACACGAGAAGCCGTCCCCGCCGTCCACTATCTTGCCGCGATCTTCGGG
CGAAGCGCCGGCCAGGGAAGAGCGCGAGGAACGAACCGGTGGCGGCCGCG
GCGGCAGCAGTTCTGGTGCGCAGAAGAAGGGACACGGGGGAGCTAGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGTGGCTGTGGTTTTGGCAATGGGTT
CTACACCCTTTGCGAGGCGTGTTTTCCCCACAGACATCAGTTCCACCCGC
CGCACCCCTTCGCGCGCTTGAGGCCCGGGTTCGCAGAGCCTCGCCTGTCG
GGCCCAGTTCTTTACGAAGCTGTGTGAGTGTGATACGTTGACGGACGTAC
CAACGTGGCGGGTAGCATCTGGATGCGGTCGGCTTGTGGTTTACAGAAAA
AAACCGCGTAGCGATTGGTTTGTGTGGAAGCGATGATGACGGTCATGAAC
CGAGTGATGACCATTTACTCGGAACGTGCCGTATTATGATCGCGGTGATG
CAAGCCATGCGCCGCTGGAACGGGCAACACTAGCCATGGTACCGTCGTAA
ACATGTGTCTCTTCGTCCGACCTTTCCTTGCCCCTACCTGCAGGTGCGGC
GACTGTTCTTTTGGCTCGCTCATTCTTGTTCGGCCTTTGAAGGCGCGAGA
GGCCGCCCCCGGAGACACTGGGAGCGGAGATGGCGGAGATCTCTGGGCCG
TGCCAGTGCGGGTGGACTCTGCGGGGCCTCTTCCGTTGTCGCAGGCACGT
ATTTTACATTTTACCCTTGTTGGTGCTCGCGTTATCGTCTGAGTGCGAGG
TATGTAGTGATATGTTTTCTGTCCTTGGTACTCACAGTACCGTGTGAGGG
CGAGGTTTGTGAGAGCTGCTGCTGCTGCTGCTGCTGCTGGTGCATGCATG
CGTGTTCAATGAACTGCTGTGTCAGCAGAGCAAGGGATGCTGCTGCTGTA
TGCATACGTGTCAATGAGTTGTTTCAGAAACAGAGAAAGGATTGTACACT
CGAAACGGGAGGTAAACAGTTTTATGGTATTCTACGCTGTGTTGCCAGCA
TGTTGCTTGTGCTTTTGATGGGGAGCAATCAATAATTTTCCCCATGTCGT
GGACTGAGATGGGCGTACTGGTTGCGTTGCCCGCCTTTATTTGTCCTAGT
AGCGCATTGATGTCCACCTTTTTCGAGATGGATCACCGTCTTTATCTCCT
TGTTGTACAGATGCGGCCAACACCCCGCTACAAATCGCTCTCTACCCTAT
TTTGCTTTTGAAGGAGGGGGGATGTACTGTCGTATGTACTTGTCTTGATC
CTTACGAGATTGACCAGTATTAGCTCATGACCGGAGACTTACAGAGCAAT
AGCCCTAGCTCCATCGCAGAAAAGGCAAGACCCTAGAGTCGGTACTGTAG
ATTGGATGAGGAAACCCTGCTGCTGCAAGGCTAGCTAGCAAGTTTACAGG
CGACACGTTGCCGCGTCCACTTGCAAGAAAATGCCCGTTCACAAAGGCAG
TACCACCCACCACCACCACCACCACCACCATGACCACCACTACCACCACC
AGCCCATTTTTCGTTCATTCTCCAAGAAGCGGGTGAAGCGGGTGGGGAGC
GTGTGTGCTTTTGTACGACGCTGTGGGAAAGGTCCACAAGTCTGCCCCCC
CCGATCCCTACCCTGCGCTAGTTCTCGTTTCCAACCCTTGCGTCCCCTTT
GCCTCCAGGTTAAGAGCCGCATCGCCGCCGGGGACAGGGACGATAACAGG
GGACTGGCTTTCGCGTCAGATAACTGGCAGCTGCAGCAGGATGGGAGGGG
TGTTGCTCTCGAATCCTTGGACTCTCCATGATGTCATTCTCGCGTATTTC
GGGCCGGCGGGCGGGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1312:7363..11828- >mRNA_E-siliculosus-1a_F_contig1312.1909.1 ID=mRNA_E-siliculosus-1a_F_contig1312.1909.1|Name=mRNA_E-siliculosus-1a_F_contig1312.1909.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2574bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1312:7363..11828- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCGGCTGGAACAATGTCGCCTTTATGCACCTGTGCTTGGCGACTTA
TTTCTCCCCGCCTGACCTGGTGTGCCTGATACTCACCAGCAGAGACGCGT
TGGAAACGTACGGGAACGCGGAGACTTACCGAGCCGTATGCAAGTCGTAC
TTCGGACTTGCAGGCCGGCGTGGACACCTCACTAGGAGGCAACGAGGGAA
GAAAGGGGTATGATGACCGGCTGGAACAATGTCGCCTTTATGCACCTGTG
CTTGGCGACTTATTTCTCCCCGCCTGACCTGGTGTGCCTGATACTCACCA
GCAGAGACGCGTTGGAAACGTACGGGAACGCGGAGACTTACCGAGCCGTA
TGCAAGTCGTACTTCGGACTTGCAGGCCGGCGTGGACACCTCACTAGGAG
GCAACGAGGGAAGAAAGGGGTATGGGGTGCGGGGGATGGCGCAAAGGCGA
GGCTTAGTTTGTTGTGGCAGGAGCGAACGAGGAACAACGTTTTGCAGCTG
CAGAACGCCCACCTCTTGCAACAACGGGAGCATGAGCGGAGGGGTGCGGG
GGATGGCGCAAAGGCGAGGCTTAGTTTGTTGTGGCAGGAGCGAACGAGGA
ACAACGTTTTGCAGCTGCAGAACGCCCACCTCTTGCAACAACGGGAGCAT
GAGCGGAGGTGGGTTCTGCAGCAAGCGGCAGCGGTGATGCGAAGGTGCGC
GTACGGTTCACGCCAACAAGGCAGTGGCTGCGCTCACACCAAGCTCAGGT
GGGTTCTGCAGCAAGCGGCAGCGGTGATGCGAAGGTGCGCGTACGGTTCA
CGCCAACAAGGCAGTGGCTGCGCTCACACCAAGCTCAGGCTTTGGACTTC
CGCCCACCTCGTCGCCACCAAGAGCTCCTCCCGCAGAAGCCAGGAGCGCC
CCGCGTCTCACCACGGGGTGCGGTGCGACCGGTGCAAGAAGGGACCGATA
ACGGGGTCCTGCTTCCGCTGCGCGGCAGGCTGCGCAGCAACGGCAGTGCC
CAACGACACGAGCACGTGTCCGCCCCATTGTGGAAAAAGCGGCGTCGCCA
ACGGCGTTGGCAGGGGCGTGAGGCGGCGCCACCATCAGCAGCAGCAGCAG
CAGCAGCAGCAACACGAGAAGCCGTCCCCGCCGTCCACTATCTTGCCGCG
ATCTTCGGGCGAAGCGCCGGCCAGGGAAGAGCGCGAGGAACGAACCGGTG
GCGGCCGCGGCGGCAGCAGTTCTGGTGCGCAGAAGAAGGGACACGGGGGA
GCTAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCTGTGGTTTTGG
CAATGGGTTCTACACCCTTTGCGAGGCGTGTTTTCCCCACAGACATCAGT
TCCACCCGCCGCACCCCTTCGCGCGCTTGAGGCCCGGGTTCGCAGAGCCT
CGCCTGTCGGGCCCAGTTCTTTACGAAGCTGTGCTTTGGACTTCCGCCCA
CCTCGTCGCCACCAAGAGCTCCTCCCGCAGAAGCCAGGAGCGCCCCGCGT
CTCACCACGGGGTGCGGTGCGACCGGTGCAAGAAGGGACCGATAACGGGG
TCCTGCTTCCGCTGCGCGGCAGGCTGCGCAGCAACGGCAGTGCCCAACGA
CACGAGCACGTGTCCGCCCCATTGTGGAAAAAGCGGCGTCGCCAACGGCG
TTGGCAGGGGCGTGAGGCGGCGCCACCATCAGCAGCAGCAGCAGCAGCAG
CAGCAACACGAGAAGCCGTCCCCGCCGTCCACTATCTTGCCGCGATCTTC
GGGCGAAGCGCCGGCCAGGGAAGAGCGCGAGGAACGAACCGGTGGCGGCC
GCGGCGGCAGCAGTTCTGGTGCGCAGAAGAAGGGACACGGGGGAGCTAGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCTGTGGTTTTGGCAATGG
GTTCTACACCCTTTGCGAGGCGTGTTTTCCCCACAGACATCAGTTCCACC
CGCCGCACCCCTTCGCGCGCTTGAGGCCCGGGTTCGCAGAGCCTCGCCTG
TCGGGCCCAGTTCTTTACGAAGCTGTGTGCGGCGACTGTTCTTTTGGCTC
GCTCATTCTTGTTCGGCCTTTGAAGGCGCGAGAGGCCGCCCCCGGAGACA
CTGGGAGCGGAGATGGCGGAGATCTCTGGGCCGTGCCAGTGCGGGTGGAC
TCTGCGGGGCCTCTTCCGTTGTCGCAGGTGCGGCGACTGTTCTTTTGGCT
CGCTCATTCTTGTTCGGCCTTTGAAGGCGCGAGAGGCCGCCCCCGGAGAC
ACTGGGAGCGGAGATGGCGGAGATCTCTGGGCCGTGCCAGTGCGGGTGGA
CTCTGCGGGGCCTCTTCCGTTGTCGCAGGTTAAGAGCCGCATCGCCGCCG
GGGACAGGGACGATAACAGGGGACTGGCTTTCGCGTCAGATAACTGGCAG
CTGCAGCAGGATGGGAGGGGTGTTGCTCTCGAATCCTTGGACTCTCCATG
AGTTAAGAGCCGCATCGCCGCCGGGGACAGGGACGATAACAGGGGACTGG
CTTTCGCGTCAGATAACTGGCAGCTGCAGCAGGATGGGAGGGGTGTTGCT
CTCGAATCCTTGGACTCTCCATGA back to top
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