mRNA_E-siliculosus-1a_F_contig13113.1907.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13113.1907.1
Unique NamemRNA_E-siliculosus-1a_F_contig13113.1907.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13113.1907.1 vs. uniprot
Match: D8LT99_ECTSI (Aureochrome 3 n=5 Tax=Phaeophyceae TaxID=2870 RepID=D8LT99_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 3.370e-40
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 2 
Query:  173 QQAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTEGEEDGEXXXXXXXXXXXSDTEEKDAAG 439
            ++AIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTEGEEDGEXXXXXXXXXX SDTEEKDAAG
Sbjct:  188 RKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTEGEEDGEXXXXXXXXXX-SDTEEKDAAG 275
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BLAST of mRNA_E-siliculosus-1a_F_contig13113.1907.1 vs. uniprot
Match: A0A126X2D9_9PHAE (Putative LOV domain-containing protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A126X2D9_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.330e-33
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 2 
Query:  173 QQAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTEGEE 367
            ++AIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEG VINYVGVQCKVDEDFVRAVQRTEGEE
Sbjct:  187 RKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGAVINYVGVQCKVDEDFVRAVQRTEGEE 251
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BLAST of mRNA_E-siliculosus-1a_F_contig13113.1907.1 vs. uniprot
Match: A0A126WZN1_9PHAE (Putative LOV domain-containing protein n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A126WZN1_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 4.170e-32
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 2 
Query:  173 QQAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTEGEEDGEXXXXXXXXXXXSDTEEKDA 433
            ++AIEKGMDTSVCLRNYRVDG MFWNQFFIAALRDSEG VINYVGVQCKVDEDFVRA Q+ EG+EDG+ XXXXXXXXXX D ++K A
Sbjct:  207 RKAIEKGMDTSVCLRNYRVDGVMFWNQFFIAALRDSEGAVINYVGVQCKVDEDFVRASQKKEGDEDGDEXXXXXXXXXXXDADDKAA 293
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BLAST of mRNA_E-siliculosus-1a_F_contig13113.1907.1 vs. uniprot
Match: A0A126X307_SARHM (Putative LOV domain-containing protein n=1 Tax=Sargassum hemiphyllum TaxID=127544 RepID=A0A126X307_SARHM)

HSP 1 Score: 120 bits (301), Expect = 4.460e-29
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 2 
Query:  173 QQAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTE 358
            ++AIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRA Q+ E
Sbjct:  358 RKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAAQKRE 419
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BLAST of mRNA_E-siliculosus-1a_F_contig13113.1907.1 vs. uniprot
Match: A0A126X1C8_9PHAE (Putative LOV domain-containing protein n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A126X1C8_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 5.190e-29
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 2 
Query:  173 QQAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTE 358
            ++AIEKGMD SVCLRNYRVDGAMFWNQFFIAALRDSEG VINYVGVQCKVDEDFVRA Q+ E
Sbjct:  152 RKAIEKGMDASVCLRNYRVDGAMFWNQFFIAALRDSEGIVINYVGVQCKVDEDFVRAAQKRE 213
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BLAST of mRNA_E-siliculosus-1a_F_contig13113.1907.1 vs. uniprot
Match: A0A6H5JLB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB5_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.110e-25
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 2 
Query:  239 MFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTEGEEDGEXXXXXXXXXXXSDTEEKDAAG 439
            MFWNQFFIAALRD+EG VINYVGVQCKVDE+FVRAVQRTEGEEDG XXXXXXXXXX SDTEEKDAAG
Sbjct:    1 MFWNQFFIAALRDAEGAVINYVGVQCKVDEEFVRAVQRTEGEEDGXXXXXXXXXXXHSDTEEKDAAG 67
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BLAST of mRNA_E-siliculosus-1a_F_contig13113.1907.1 vs. uniprot
Match: A0A7S2GCF2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCF2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.340e-22
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 2 
Query:  173 QQAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTEGEEDG 373
            + A+  G+D SVCL NYR+DG+ FWNQFF+A LRDS+G V+NYVGVQCKV EDF RA+ ++EG E G
Sbjct:  169 RNAVADGIDASVCLLNYRIDGSTFWNQFFVAPLRDSDGQVVNYVGVQCKVSEDFARAIAQSEGAEKG 235
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BLAST of mRNA_E-siliculosus-1a_F_contig13113.1907.1 vs. uniprot
Match: A0A7S2WVR6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVR6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.150e-22
Identity = 42/62 (67.74%), Postives = 54/62 (87.10%), Query Frame = 2 
Query:  173 QQAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTE 358
            ++AI++G DTSVCL NYR+DG+ FWNQFF+A LRDSEG V+NYVGVQCKV +DF RA+ ++E
Sbjct:  189 RKAIQEGFDTSVCLLNYRIDGSTFWNQFFVAPLRDSEGNVVNYVGVQCKVSDDFARAIAQSE 250
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BLAST of mRNA_E-siliculosus-1a_F_contig13113.1907.1 vs. uniprot
Match: A0A835YVH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH1_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 6.250e-21
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 2 
Query:  167 RNQQAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTE 358
            R ++AIE G DTSVCL NYR DG  FWNQFFIA+LRD++G +INYVGVQCKV E+FV AVQ+ E
Sbjct:  321 RIRKAIESGCDTSVCLLNYRSDGTQFWNQFFIASLRDADGKIINYVGVQCKVSEEFVTAVQKQE 384
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BLAST of mRNA_E-siliculosus-1a_F_contig13113.1907.1 vs. uniprot
Match: A0A7S2US53_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US53_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.940e-18
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 2 
Query:  173 QQAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTEGE 364
            + A+  G DTSVC+ NYR DG  FWNQFF+AALRD EG V+N+VGVQCKV EDF +A+ R++ E
Sbjct:  326 RDAVMAGEDTSVCIINYRADGTKFWNQFFVAALRDVEGNVVNFVGVQCKVTEDFAKALLRSQNE 389
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13113.1907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT99_ECTSI3.370e-4096.63Aureochrome 3 n=5 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A126X2D9_9PHAE1.330e-3395.38Putative LOV domain-containing protein n=4 Tax=Scy... [more]
A0A126WZN1_9PHAE4.170e-3282.76Putative LOV domain-containing protein n=1 Tax=Dic... [more]
A0A126X307_SARHM4.460e-2991.94Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A126X1C8_9PHAE5.190e-2988.71Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A6H5JLB5_9PHAE1.110e-2592.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GCF2_9STRA2.340e-2264.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2WVR6_9STRA3.150e-2267.74Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YVH1_9STRA6.250e-2170.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2US53_9STRA1.940e-1862.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13113contigE-siliculosus-1a_F_contig13113:468..1289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size357
Model size509
Exons2
Hectar predicted targeting categorymitochondrion
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13113.1907.1prot_E-siliculosus-1a_F_contig13113.1907.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13113 563..1232 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927835.0135558-UTR-E-siliculosus-1a_F_contig13113:467..5621622927835.0135558-UTR-E-siliculosus-1a_F_contig13113:467..562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig13113 468..562 -
1696318700.484042-UTR-E-siliculosus-1a_F_contig13113:467..5621696318700.484042-UTR-E-siliculosus-1a_F_contig13113:467..562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig13113 468..562 -
1622927835.053893-UTR-E-siliculosus-1a_F_contig13113:1232..12891622927835.053893-UTR-E-siliculosus-1a_F_contig13113:1232..1289Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig13113 1233..1289 -
1696318700.5079436-UTR-E-siliculosus-1a_F_contig13113:1232..12891696318700.5079436-UTR-E-siliculosus-1a_F_contig13113:1232..1289Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig13113 1233..1289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927835.0262215-CDS-E-siliculosus-1a_F_contig13113:562..7801622927835.0262215-CDS-E-siliculosus-1a_F_contig13113:562..780Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13113 563..780 -
1696318700.492098-CDS-E-siliculosus-1a_F_contig13113:562..7801696318700.492098-CDS-E-siliculosus-1a_F_contig13113:562..780Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13113 563..780 -
1622927835.04388-CDS-E-siliculosus-1a_F_contig13113:1093..12321622927835.04388-CDS-E-siliculosus-1a_F_contig13113:1093..1232Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13113 1094..1232 -
1696318700.499741-CDS-E-siliculosus-1a_F_contig13113:1093..12321696318700.499741-CDS-E-siliculosus-1a_F_contig13113:1093..1232Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13113 1094..1232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13113.1907.1

>prot_E-siliculosus-1a_F_contig13113.1907.1 ID=prot_E-siliculosus-1a_F_contig13113.1907.1|Name=mRNA_E-siliculosus-1a_F_contig13113.1907.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=119bp
MLLLLLLRRWLRSACVLVRGGGDGAKRGQLAVRSLLPQPTGYREGHGHVR
LPPQLPRGRSHVLEPVLHRGAAGLRGHRDQLRRGAVQGGRRFCPRCAANG
GRGRRRGRRRGGGGRGSQ*
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mRNA from alignment at E-siliculosus-1a_F_contig13113:468..1289-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13113.1907.1 ID=mRNA_E-siliculosus-1a_F_contig13113.1907.1|Name=mRNA_E-siliculosus-1a_F_contig13113.1907.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=822bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13113:468..1289- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCACGATCCCCCTTTCCCTTGTGCGCTGCTGTTGACGTTACGTCGTTG
TGTTGTTATGCTTCTTCTTCTTCTTCTTCGTCGGTGGCTCCGATCGGCGT
GCGTGCTTGTGCGTGGCGGTGGCGATGGCGCGAAACGTGGGCAACTTGCC
GTCCGTTCTCTCCTTCCGCAACCAACAGGCTATCGAGAAGGGCATGGTGA
GAAGGAAGAAGGAAGGAAGGAAGGAAGGAGCAGAGGAGGGAGGGCGCGTT
CTGTGTTGCTTGCTTGGTGGTGCTGTTGTTGGTGTTGGTGTTTGCTGAGA
GCCGTTGTTGCCGTCGTTTGGCGGTTCTATGAAAACATTGACAACAAGGA
AGGACACTAGCACTCAATCGGCGAACGCGCTGACTGCTTGTCCTCGCTCA
AAACGGGTTTCATTTTTTTTTTCTTCGACAGCCTTACATGGTTCTCTCTT
CTCTTCATCCTCTGTTTGCGCTCCCCCCCCCTCCCCCCGGTACCCTATAT
AATAAACAGGACACGTCCGTTTGCCTCCGCAACTACCGCGTGGACGGAGC
CATGTTCTGGAACCAGTTCTTCATCGCGGCGCTGCGGGACTCCGAGGGCA
CCGTGATCAACTACGTCGGGGTGCAGTGCAAGGTGGACGAAGATTTTGTC
CGCGCTGTGCAGCGAACGGAGGGAGAGGAAGACGGCGAGGGCGACGAAGA
GGAGGAGGAGGACGAGGATCACAGTGACACGGAGGAAAAAGACGCCGCCG
GTTAACGGTGGGGCCGGGGGGTTCCGTGGAATCGCACGCCCAGGGAGGAG
GTTTTTCGGGTTGGTGGGTGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13113:468..1289-

>mRNA_E-siliculosus-1a_F_contig13113.1907.1 ID=mRNA_E-siliculosus-1a_F_contig13113.1907.1|Name=mRNA_E-siliculosus-1a_F_contig13113.1907.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13113:468..1289- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTTCTTCTTCTTCTTCTTCGTCGGTGGCTCCGATCGGCGTGCGTGCT
TGTGCGTGGCGGTGGCGATGGCGCGAAACGTGGGCAACTTGCCGTCCGTT
CTCTCCTTCCGCAACCAACAGGCTATCGAGAAGGGCATGATGCTTCTTCT
TCTTCTTCTTCGTCGGTGGCTCCGATCGGCGTGCGTGCTTGTGCGTGGCG
GTGGCGATGGCGCGAAACGTGGGCAACTTGCCGTCCGTTCTCTCCTTCCG
CAACCAACAGGCTATCGAGAAGGGCATGGACACGTCCGTTTGCCTCCGCA
ACTACCGCGTGGACGGAGCCATGTTCTGGAACCAGTTCTTCATCGCGGCG
CTGCGGGACTCCGAGGGCACCGTGATCAACTACGTCGGGGTGCAGTGCAA
GGTGGACGAAGATTTTGTCCGCGCTGTGCAGCGAACGGAGGGAGAGGAAG
ACGGCGAGGGCGACGAAGAGGAGGAGGAGGACGAGGATCACAGTGAGACA
CGTCCGTTTGCCTCCGCAACTACCGCGTGGACGGAGCCATGTTCTGGAAC
CAGTTCTTCATCGCGGCGCTGCGGGACTCCGAGGGCACCGTGATCAACTA
CGTCGGGGTGCAGTGCAAGGTGGACGAAGATTTTGTCCGCGCTGTGCAGC
GAACGGAGGGAGAGGAAGACGGCGAGGGCGACGAAGAGGAGGAGGAGGAC
GAGGATCACAGTGA
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