mRNA_E-siliculosus-1a_F_contig13111.1904.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13111.1904.1
Unique NamemRNA_E-siliculosus-1a_F_contig13111.1904.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13111.1904.1 vs. uniprot
Match: A0A835YSP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.570e-17
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    7 KAALDPGVGKSEVRTMEREIHRMRIRLEGLKREQERMIQEMERAIAKREQIAVRYKGKSEA 189
            +AALDP  GK EV+ MEREIHRMR+RL+ LKREQE MIQ+ME+AI KREQIAVRYKGK+ A
Sbjct:  645 QAALDPEAGKGEVKGMEREIHRMRVRLDTLKREQETMIQDMEQAIMKREQIAVRYKGKAAA 705
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BLAST of mRNA_E-siliculosus-1a_F_contig13111.1904.1 vs. uniprot
Match: A0A7S2UYH9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYH9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.160e-16
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:   13 ALDPGVGKSEVRTMEREIHRMRIRLEGLKREQERMIQEMERAIAKREQIAVRYKGKSEA 189
            ALDP VG +E ++ME+EIHRMR+RL+ LKREQERMI +MERAI KREQIAVRYK K  A
Sbjct:   98 ALDPEVGMAEAKSMEKEIHRMRLRLDNLKREQERMIVDMERAIHKREQIAVRYKSKKAA 156
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BLAST of mRNA_E-siliculosus-1a_F_contig13111.1904.1 vs. uniprot
Match: A0A8J2STC7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2STC7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.690e-15
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    7 KAALDPGVGKSEVRTMEREIHRMRIRLEGLKREQERMIQEMERAIAKREQIAVRYKGKS 183
            +AALDP VG  E++ ME EIHRM++RLEGL+REQE MI+EMER IAKRE I +RYKGK+
Sbjct:  707 QAALDPSVGTGEIKAMEIEIHRMKMRLEGLQREQEAMIKEMERGIAKREAITLRYKGKA 765
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BLAST of mRNA_E-siliculosus-1a_F_contig13111.1904.1 vs. uniprot
Match: F0Y3X9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3X9_AURAN)

HSP 1 Score: 77.4 bits (189), Expect = 4.310e-15
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    7 KAALDPGVGKSEVRTMEREIHRMRIRLEGLKREQERMIQEMERAIAKREQIAVRYKGK 180
            +AALDP VG SE++ ME EIHRMR+RL+GL+REQERMI EMER I KRE I +R+KGK
Sbjct:  635 QAALDPEVGMSEIKAMEIEIHRMRLRLDGLQREQERMIVEMERGIGKREAITLRFKGK 692
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BLAST of mRNA_E-siliculosus-1a_F_contig13111.1904.1 vs. uniprot
Match: A0A7S3XSM0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSM0_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 1.500e-14
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    7 KAALDPGVGKSEVRTMEREIHRMRIRLEGLKREQERMIQEMERAIAKREQIAVRYKGKSEAA 192
            +AALDP VG SE + ME+EIHRM++RLE LKREQER++  ME A+ KREQI+VR++GK +AA
Sbjct:  580 QAALDPEVGMSEAKGMEKEIHRMKLRLENLKREQERLLAAMETAVLKREQISVRFQGKKKAA 641
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BLAST of mRNA_E-siliculosus-1a_F_contig13111.1904.1 vs. uniprot
Match: A0A6A5ASU7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ASU7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.700e-14
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    7 KAALDPGVGKSEVRTMEREIHRMRIRLEGLKREQERMIQEMERAIAKREQIAVRYKGKSE 186
            +AALDP VG++E + MEREIHRMR+RLE L+R+QERMI EMERAI KR+ IA+R +GK E
Sbjct:  178 QAALDPEVGQAEAKNMEREIHRMRLRLEALERDQERMIFEMERAIHKRDAIAMRGRGKKE 237
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BLAST of mRNA_E-siliculosus-1a_F_contig13111.1904.1 vs. uniprot
Match: A0A1W0A128_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A128_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.050e-14
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    7 KAALDPGVGKSEVRTMEREIHRMRIRLEGLKREQERMIQEMERAIAKREQIAVRYKGKSE 186
            +AALDP VG+SE R ME+EIHRMR+RLE L+R+QERM+ +MERAI KR+ IA+R +GK E
Sbjct:  677 QAALDPEVGQSEARNMEKEIHRMRLRLEALERDQERMVLDMERAIHKRDAIAMRGRGKKE 736
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BLAST of mRNA_E-siliculosus-1a_F_contig13111.1904.1 vs. uniprot
Match: W4GYL2_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYL2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.050e-14
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    7 KAALDPGVGKSEVRTMEREIHRMRIRLEGLKREQERMIQEMERAIAKREQIAVRYKGKSE 186
            +AALDP VG++E + MEREIHRMR+RLE L+R+QERMI EMERAI KR+ IA+R +GK E
Sbjct:  693 QAALDPEVGQAEAKNMEREIHRMRLRLEALERDQERMIFEMERAIHKRDAIAMRGRGKKE 752
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BLAST of mRNA_E-siliculosus-1a_F_contig13111.1904.1 vs. uniprot
Match: A0A024U237_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U237_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.050e-14
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    7 KAALDPGVGKSEVRTMEREIHRMRIRLEGLKREQERMIQEMERAIAKREQIAVRYKGKSE 186
            +AALDP VG++E + MEREIHRMR+RLE L+R+QERMI EMERAI KR+ IA+R +GK E
Sbjct:  703 QAALDPEVGQAEAKNMEREIHRMRLRLEALERDQERMIFEMERAIHKRDAIAMRGRGKKE 762
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BLAST of mRNA_E-siliculosus-1a_F_contig13111.1904.1 vs. uniprot
Match: A0A7S1UJV6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJV6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.880e-14
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    7 KAALDPGVGKSEVRTMEREIHRMRIRLEGLKREQERMIQEMERAIAKREQIAVRYKG 177
            KAALDP  G++EV+ MEREIHRMRIRL GL+REQE++I +MERAI KRE IA R++G
Sbjct:  124 KAALDPESGQAEVKGMEREIHRMRIRLTGLQREQEKLITDMERAIYKREAIATRFRG 180
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13111.1904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSP4_9STRA1.570e-1775.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UYH9_9STRA6.160e-1672.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2STC7_9STRA1.690e-1569.49Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y3X9_AURAN4.310e-1570.69Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3XSM0_HETAK1.500e-1464.52Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6A5ASU7_9STRA1.700e-1468.33Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1W0A128_9STRA2.050e-1466.67Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W4GYL2_9STRA2.050e-1468.33Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A024U237_9STRA2.050e-1468.33Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S1UJV6_9STRA2.880e-1470.18Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13111contigE-siliculosus-1a_F_contig13111:151..721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size192
Model size192
Exons2
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2CJ7Q@1,2QQ91@2759
EggNOG free text desc.epithelial cilium movement involved in determination of left/right asymmetry
GOsGO:0000226,GO:0001578,GO:0001655,GO:0001822,GO:0001889,GO:0001947,GO:0002009,GO:0003007,GO:0003143,GO:0003146,GO:0003341,GO:0003351,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030323,GO:0030324,GO:0031016,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035050,GO:0035082,GO:0035239,GO:0035295,GO:0035469,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048562,GO:0048565,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048732,GO:0048793,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051641,GO:0051674,GO:0055123,GO:0060271,GO:0060287,GO:0060429,GO:0060541,GO:0060562,GO:0060632,GO:0061008,GO:0061371,GO:0061512,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0071907,GO:0071910,GO:0072001,GO:0072359,GO:0097014,GO:0097722,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Preferred nameCCDC40
Seed eggNOG ortholog44056.XP_009035285.1
Seed ortholog evalue4.6e-12
Seed ortholog score76.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927834.9086637-CDS-E-siliculosus-1a_F_contig13111:150..2581622927834.9086637-CDS-E-siliculosus-1a_F_contig13111:150..258Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13111 151..258 +
1696318700.4227343-CDS-E-siliculosus-1a_F_contig13111:150..2581696318700.4227343-CDS-E-siliculosus-1a_F_contig13111:150..258Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13111 151..258 +
1622927834.9209137-CDS-E-siliculosus-1a_F_contig13111:637..7211622927834.9209137-CDS-E-siliculosus-1a_F_contig13111:637..721Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13111 638..721 +
1696318700.4397953-CDS-E-siliculosus-1a_F_contig13111:637..7211696318700.4397953-CDS-E-siliculosus-1a_F_contig13111:637..721Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13111 638..721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13111.1904.1prot_E-siliculosus-1a_F_contig13111.1904.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13111 151..721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13111.1904.1

>prot_E-siliculosus-1a_F_contig13111.1904.1 ID=prot_E-siliculosus-1a_F_contig13111.1904.1|Name=mRNA_E-siliculosus-1a_F_contig13111.1904.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=64bp
MPKAALDPGVGKSEVRTMEREIHRMRIRLEGLKREQERMIQEMERAIAKR
EQIAVRYKGKSEAA
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mRNA from alignment at E-siliculosus-1a_F_contig13111:151..721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13111.1904.1 ID=mRNA_E-siliculosus-1a_F_contig13111.1904.1|Name=mRNA_E-siliculosus-1a_F_contig13111.1904.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=571bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13111:151..721+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGAAGGCCGCCCTAGACCCAGGAGTAGGAAAGAGTGAGGTCCGCAC
GATGGAGAGGGAGATCCACCGCATGCGCATCAGATTAGAGGGGCTGAAAC
GGGAGCAGGTCTGGTGCATGCTTTGTTGATCTTTGTACGCTCACGCGCCA
TGAATTGTTTTGGCGGGGGTGAGGAAAGGCCGCGGGAGAGGTGTGGGCAG
AACAGTAAAGTTATACCAATATGTGGTGGGGTTGGGAAGCAATAGCTAGA
TACACTTGTAGCGCAATGTTTTCGGGTAGCAAAAGCAACTCCCTGTGCAT
CCGCCGTACTATGTCGAAACAGCCGTTGAGGTTTTCTAGGCGAGATCTCT
AGCTTGTCGCGTAATGTTCTCATGCGTTAATGCGTGGATGAGATTCTTGG
CGTAACAGGTGCCAAAGAGTTGAGTACTGACTGTTTACATTCCGAAGAAA
CTGCCCACCATTGTACCACGACTCCCAAACAATCTAGGAACGCATGATCC
AGGAGATGGAAAGAGCAATCGCCAAGCGTGAGCAGATCGCCGTGAGGTAT
AAGGGAAAGAGCGAAGCCGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13111:151..721+

>mRNA_E-siliculosus-1a_F_contig13111.1904.1 ID=mRNA_E-siliculosus-1a_F_contig13111.1904.1|Name=mRNA_E-siliculosus-1a_F_contig13111.1904.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13111:151..721+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGAAGGCCGCCCTAGACCCAGGAGTAGGAAAGAGTGAGGTCCGCAC
GATGGAGAGGGAGATCCACCGCATGCGCATCAGATTAGAGGGGCTGAAAC
GGGAGCAGATGCCGAAGGCCGCCCTAGACCCAGGAGTAGGAAAGAGTGAG
GTCCGCACGATGGAGAGGGAGATCCACCGCATGCGCATCAGATTAGAGGG
GCTGAAACGGGAGCAGGAACGCATGATCCAGGAGATGGAAAGAGCAATCG
CCAAGCGTGAGCAGATCGCCGTGAGGTATAAGGGAAAGAGCGAAGCCGCG
GAACGCATGATCCAGGAGATGGAAAGAGCAATCGCCAAGCGTGAGCAGAT
CGCCGTGAGGTATAAGGGAAAGAGCGAAGCCGCG
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