mRNA_E-siliculosus-1a_F_contig1311.1903.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1311.1903.1
Unique NamemRNA_E-siliculosus-1a_F_contig1311.1903.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1311.1903.1 vs. uniprot
Match: A0A6H5K1R5_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R5_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 4.180e-63
Identity = 103/112 (91.96%), Postives = 104/112 (92.86%), Query Frame = 1 
Query:   55 FPQATYLPLRLTQHLGGFKDLVALKIYGLPYLNPWQLPGNGMDAFRLAKEATLRALDTPVKKRGWTGSAAATKADDGTSGLPEAVHRGVRVVKVRAQRGQMVDSRGVVRSRL 390
            +  ATYLPLRLTQHLGGF DLVALKI GLPYLNPWQLPGNGMDAFRLAKEATLRALDTPVKKRGWTGS AATKADDGTSGLPEAVH GVRVVKVRAQR QMVDS GVVRSRL
Sbjct:  191 YHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFRLAKEATLRALDTPVKKRGWTGSVAATKADDGTSGLPEAVHPGVRVVKVRAQRRQMVDSGGVVRSRL 302
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BLAST of mRNA_E-siliculosus-1a_F_contig1311.1903.1 vs. uniprot
Match: D8LD55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD55_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.460e-40
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:  178 MDAFRLAKEATLRALDTPVKKRGWTGSAAATKADDGTSGLPEAVHRGVRVVKVRAQRGQMVDSRGVVRSRL 390
            MDAFRLAKEATLRALDTPVKKRGWTGSAAATKADDGTSGLPEAVHRGVRVVKVRAQRGQMVDSRGVVRSRL
Sbjct:    1 MDAFRLAKEATLRALDTPVKKRGWTGSAAATKADDGTSGLPEAVHRGVRVVKVRAQRGQMVDSRGVVRSRL 71
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1311.1903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1R5_9PHAE4.180e-6391.96PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LD55_ECTSI3.460e-40100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1311contigE-siliculosus-1a_F_contig1311:32809..33611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size393
Model size393
Exons2
Ec32 orthologEc-11_000510.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927834.8493369-CDS-E-siliculosus-1a_F_contig1311:32808..330651622927834.8493369-CDS-E-siliculosus-1a_F_contig1311:32808..33065Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1311 32809..33065 -
1696318700.3945758-CDS-E-siliculosus-1a_F_contig1311:32808..330651696318700.3945758-CDS-E-siliculosus-1a_F_contig1311:32808..33065Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1311 32809..33065 -
1622927834.8663306-CDS-E-siliculosus-1a_F_contig1311:33475..336111622927834.8663306-CDS-E-siliculosus-1a_F_contig1311:33475..33611Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1311 33476..33611 -
1696318700.411165-CDS-E-siliculosus-1a_F_contig1311:33475..336111696318700.411165-CDS-E-siliculosus-1a_F_contig1311:33475..33611Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1311 33476..33611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1311.1903.1prot_E-siliculosus-1a_F_contig1311.1903.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1311 32809..33611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1311.1903.1

>prot_E-siliculosus-1a_F_contig1311.1903.1 ID=prot_E-siliculosus-1a_F_contig1311.1903.1|Name=mRNA_E-siliculosus-1a_F_contig1311.1903.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=131bp
MHTLSYFPPGCAVGITHSFPQATYLPLRLTQHLGGFKDLVALKIYGLPYL
NPWQLPGNGMDAFRLAKEATLRALDTPVKKRGWTGSAAATKADDGTSGLP
EAVHRGVRVVKVRAQRGQMVDSRGVVRSRL*
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mRNA from alignment at E-siliculosus-1a_F_contig1311:32809..33611-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1311.1903.1 ID=mRNA_E-siliculosus-1a_F_contig1311.1903.1|Name=mRNA_E-siliculosus-1a_F_contig1311.1903.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=803bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1311:32809..33611- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATACTTTGTCATATTTCCCTCCGGGCTGCGCGGTCGGTATCACCCA
CTCGTTCCCGCAGGCAACCTACCTCCCGCTACGGTTAACACAGCATCTGG
GAGGGTTTAAAGACCTCGTCGCGCTTAAGATATACGGTGCGTTTTTTCTG
TGTATTTTTGGGTCTGTTCGTGGTACCTGTAGATGTTTATTCGGTCAGGA
CGTGTTCACATACGAGGAAGAAGGTTAACCAACCTTCGCAATACCCCGTA
GGGGAGGAAAACTTTTCTTCTCCCACTTTGCCATAGCGTGCTGAACACCC
AACACTTGTTGTTTGTGCTTCTCTACGACTTGGGCCTGCCTATTTGCACC
TCGAAGGATCATGCGTTTGCACAGGCAGCAGGAGATACTGCCGGAAAAAA
ATATTTTGCACAGGCAGCAGGAGATACTGTCGGAAAAAAACACCTTTGAA
AGGGTAATGGCGAAGTGTGCGATCACGCTGAGCCTACTATTACGTGGTTG
AACGGTTCTGATTGGTTGATCTCCCTCTGTGCGTGGCACACCGCAGGACT
CCCATATCTCAACCCGTGGCAGCTGCCGGGAAACGGCATGGACGCTTTCC
GACTGGCAAAAGAAGCGACGTTGAGGGCGTTGGATACCCCAGTGAAGAAG
CGAGGGTGGACAGGGAGCGCGGCAGCTACCAAGGCCGATGATGGCACAAG
CGGTTTGCCCGAGGCTGTACACCGGGGGGTTCGCGTGGTGAAAGTTCGGG
CGCAACGTGGACAGATGGTTGATTCTAGAGGGGTGGTGCGGAGCAGGCTA
TGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1311:32809..33611-

>mRNA_E-siliculosus-1a_F_contig1311.1903.1 ID=mRNA_E-siliculosus-1a_F_contig1311.1903.1|Name=mRNA_E-siliculosus-1a_F_contig1311.1903.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1311:32809..33611- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATACTTTGTCATATTTCCCTCCGGGCTGCGCGGTCGGTATCACCCA
CTCGTTCCCGCAGGCAACCTACCTCCCGCTACGGTTAACACAGCATCTGG
GAGGGTTTAAAGACCTCGTCGCGCTTAAGATATACGATGCATACTTTGTC
ATATTTCCCTCCGGGCTGCGCGGTCGGTATCACCCACTCGTTCCCGCAGG
CAACCTACCTCCCGCTACGGTTAACACAGCATCTGGGAGGGTTTAAAGAC
CTCGTCGCGCTTAAGATATACGGACTCCCATATCTCAACCCGTGGCAGCT
GCCGGGAAACGGCATGGACGCTTTCCGACTGGCAAAAGAAGCGACGTTGA
GGGCGTTGGATACCCCAGTGAAGAAGCGAGGGTGGACAGGGAGCGCGGCA
GCTACCAAGGCCGATGATGGCACAAGCGGTTTGCCCGAGGCTGTACACCG
GGGGGTTCGCGTGGTGAAAGTTCGGGCGCAACGTGGACAGATGGTTGATT
CTAGAGGGGTGGTGCGGAGCAGGCTATGAGACTCCCATATCTCAACCCGT
GGCAGCTGCCGGGAAACGGCATGGACGCTTTCCGACTGGCAAAAGAAGCG
ACGTTGAGGGCGTTGGATACCCCAGTGAAGAAGCGAGGGTGGACAGGGAG
CGCGGCAGCTACCAAGGCCGATGATGGCACAAGCGGTTTGCCCGAGGCTG
TACACCGGGGGGTTCGCGTGGTGAAAGTTCGGGCGCAACGTGGACAGATG
GTTGATTCTAGAGGGGTGGTGCGGAGCAGGCTATGA
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