mRNA_E-siliculosus-1a_F_contig13104.1897.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13104.1897.1
Unique NamemRNA_E-siliculosus-1a_F_contig13104.1897.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13104.1897.1 vs. uniprot
Match: D8LLS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.570e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 MRRLLDKGVPIDAETENGDTPLSLAISAGGVGSVGFLVKAGA 126
            MRRLLDKGVPIDAETENGDTPLSLAISAGGVGSVGFLVKAGA
Sbjct:   20 MRRLLDKGVPIDAETENGDTPLSLAISAGGVGSVGFLVKAGA 61
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BLAST of mRNA_E-siliculosus-1a_F_contig13104.1897.1 vs. uniprot
Match: A0A6H5KV01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV01_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.730e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 MRRLLDKGVPIDAETENGDTPLSLAISAGGVGSVGFLVKAGA 126
            MRRLLDKGVPIDAETENGDTPLSLAISAGGVGSVGFLVKAGA
Sbjct:    1 MRRLLDKGVPIDAETENGDTPLSLAISAGGVGSVGFLVKAGA 42
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13104.1897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLS5_ECTSI2.570e-19100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV01_9PHAE4.730e-19100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13104contigE-siliculosus-1a_F_contig13104:603..728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size126
Model size126
Exons1
Ec32 orthologEc-02_002690.1
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927834.2026536-CDS-E-siliculosus-1a_F_contig13104:602..7281622927834.2026536-CDS-E-siliculosus-1a_F_contig13104:602..728Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13104 603..728 -
1696318700.052769-CDS-E-siliculosus-1a_F_contig13104:602..7281696318700.052769-CDS-E-siliculosus-1a_F_contig13104:602..728Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13104 603..728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13104.1897.1prot_E-siliculosus-1a_F_contig13104.1897.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13104 603..728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13104.1897.1

>prot_E-siliculosus-1a_F_contig13104.1897.1 ID=prot_E-siliculosus-1a_F_contig13104.1897.1|Name=mRNA_E-siliculosus-1a_F_contig13104.1897.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=42bp
MRRLLDKGVPIDAETENGDTPLSLAISAGGVGSVGFLVKAGA
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mRNA from alignment at E-siliculosus-1a_F_contig13104:603..728-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13104.1897.1 ID=mRNA_E-siliculosus-1a_F_contig13104.1897.1|Name=mRNA_E-siliculosus-1a_F_contig13104.1897.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=126bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13104:603..728- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGACGGCTCCTGGACAAGGGCGTCCCGATCGACGCGGAGACGGAAAA
CGGCGACACGCCGCTAAGCCTGGCCATCAGCGCCGGCGGCGTGGGATCCG
TCGGGTTCCTCGTGAAGGCCGGTGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13104:603..728-

>mRNA_E-siliculosus-1a_F_contig13104.1897.1 ID=mRNA_E-siliculosus-1a_F_contig13104.1897.1|Name=mRNA_E-siliculosus-1a_F_contig13104.1897.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=252bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13104:603..728- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGACGGCTCCTGGACAAGGGCGTCCCGATCGACGCGGAGACGGAAAA
CGGCGACACGCCGCTAAGCCTGGCCATCAGCGCCGGCGGCGTGGGATCCG
TCGGGTTCCTCGTGAAGGCCGGTGCTATGAGACGGCTCCTGGACAAGGGC
GTCCCGATCGACGCGGAGACGGAAAACGGCGACACGCCGCTAAGCCTGGC
CATCAGCGCCGGCGGCGTGGGATCCGTCGGGTTCCTCGTGAAGGCCGGTG
CT
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