mRNA_E-siliculosus-1a_F_contig1310.1895.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1310.1895.1
Unique NamemRNA_E-siliculosus-1a_F_contig1310.1895.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1310contigE-siliculosus-1a_F_contig1310:23426..24332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size501
Model size619
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1310.1895.1prot_E-siliculosus-1a_F_contig1310.1895.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1310 23435..24223 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927833.924511-UTR-E-siliculosus-1a_F_contig1310:23425..234341622927833.924511-UTR-E-siliculosus-1a_F_contig1310:23425..23434Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1310 23426..23434 +
1696318699.901989-UTR-E-siliculosus-1a_F_contig1310:23425..234341696318699.901989-UTR-E-siliculosus-1a_F_contig1310:23425..23434Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1310 23426..23434 +
1622927833.9730825-UTR-E-siliculosus-1a_F_contig1310:24223..243321622927833.9730825-UTR-E-siliculosus-1a_F_contig1310:24223..24332Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1310 24224..24332 +
1696318699.9409275-UTR-E-siliculosus-1a_F_contig1310:24223..243321696318699.9409275-UTR-E-siliculosus-1a_F_contig1310:24223..24332Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1310 24224..24332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927833.9426608-CDS-E-siliculosus-1a_F_contig1310:23434..234531622927833.9426608-CDS-E-siliculosus-1a_F_contig1310:23434..23453Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 23435..23453 +
1696318699.9114764-CDS-E-siliculosus-1a_F_contig1310:23434..234531696318699.9114764-CDS-E-siliculosus-1a_F_contig1310:23434..23453Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 23435..23453 +
1622927833.9597254-CDS-E-siliculosus-1a_F_contig1310:23741..242231622927833.9597254-CDS-E-siliculosus-1a_F_contig1310:23741..24223Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 23742..24223 +
1696318699.928726-CDS-E-siliculosus-1a_F_contig1310:23741..242231696318699.928726-CDS-E-siliculosus-1a_F_contig1310:23741..24223Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 23742..24223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1310.1895.1

>prot_E-siliculosus-1a_F_contig1310.1895.1 ID=prot_E-siliculosus-1a_F_contig1310.1895.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1895.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=167bp
MMTMLSVRNRMLDMWLWPVALDVFYWVRLVGIDGQNGAFYREQDLPQYHG
RSLRQREGQDRVRHGRDTAPPVAQTESPPGTGVLTAAAISGTASGLTASR
LGDSGSDQNGGNLASLNTTAALGGREEFEGSSTLSSAEGSGEEVEVAPAP
SVSVARAAISSLLPAQ*
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mRNA from alignment at E-siliculosus-1a_F_contig1310:23426..24332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1310.1895.1 ID=mRNA_E-siliculosus-1a_F_contig1310.1895.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1895.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=907bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1310:23426..24332+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTACGGGCATGATGACAATGCTGTCAGGTGGGTTTTGTTCTGATGACCA
AGAACAAGGTGCAGCGAGAAGTCTCGGAATGCGCGGGGGGGTGGTGTGCA
TGCGCAACCAGGATATGCAGACTTCACGTTGCTCTGGTTGCCACGTCCTT
CGGAGTTTCACTCTCCCGCACACCCACGCGTCCGATACAAATAGCATTCG
AATCCGCGGTAATCCCAAGCGCCAATAGTTCCGTGGTCCCCTCACGGCAC
GCGAGTGACATGTAGTATGCCGCTCACGACGAAAACCTTGTCATCTCACT
CTCCTCTTCTGGGCAGTTCGGAATCGCATGCTGGATATGTGGCTGTGGCC
GGTGGCGCTGGACGTCTTCTACTGGGTCAGGCTCGTCGGCATCGACGGCC
AGAACGGTGCCTTCTACCGCGAACAAGACCTTCCCCAGTACCACGGACGA
TCCCTACGACAACGCGAAGGGCAGGATCGTGTCCGTCATGGGCGTGACAC
AGCTCCGCCTGTGGCACAAACTGAGAGTCCACCAGGAACGGGGGTGCTTA
CGGCTGCCGCTATTTCTGGAACCGCCTCAGGACTAACAGCGAGTAGACTT
GGCGATTCAGGAAGCGACCAAAACGGAGGCAATTTGGCTTCTCTTAACAC
CACGGCTGCGTTGGGTGGTCGTGAGGAATTCGAGGGATCTTCCACTCTTT
CGTCGGCGGAAGGGTCTGGGGAAGAAGTTGAGGTCGCTCCCGCTCCATCA
GTGTCCGTTGCGAGGGCTGCAATCTCGTCGCTACTGCCAGCACAGTGACC
CACACAAGTGTATTCCTGTCTTAAAGACATCGAAAGGCGACGCGTTTTGT
TTCCGCCATCGAAGTGAGACGATGTTCTTCATGTCCAATACACCGTGGCG
GAAAGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1310:23426..24332+

>mRNA_E-siliculosus-1a_F_contig1310.1895.1 ID=mRNA_E-siliculosus-1a_F_contig1310.1895.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1895.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1002bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1310:23426..24332+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGACAATGCTGTCAGATGATGACAATGCTGTCAGTTCGGAATCGCA
TGCTGGATATGTGGCTGTGGCCGGTGGCGCTGGACGTCTTCTACTGGGTC
AGGCTCGTCGGCATCGACGGCCAGAACGGTGCCTTCTACCGCGAACAAGA
CCTTCCCCAGTACCACGGACGATCCCTACGACAACGCGAAGGGCAGGATC
GTGTCCGTCATGGGCGTGACACAGCTCCGCCTGTGGCACAAACTGAGAGT
CCACCAGGAACGGGGGTGCTTACGGCTGCCGCTATTTCTGGAACCGCCTC
AGGACTAACAGCGAGTAGACTTGGCGATTCAGGAAGCGACCAAAACGGAG
GCAATTTGGCTTCTCTTAACACCACGGCTGCGTTGGGTGGTCGTGAGGAA
TTCGAGGGATCTTCCACTCTTTCGTCGGCGGAAGGGTCTGGGGAAGAAGT
TGAGGTCGCTCCCGCTCCATCAGTGTCCGTTGCGAGGGCTGCAATCTCGT
CGCTACTGCCAGCACAGTGATTCGGAATCGCATGCTGGATATGTGGCTGT
GGCCGGTGGCGCTGGACGTCTTCTACTGGGTCAGGCTCGTCGGCATCGAC
GGCCAGAACGGTGCCTTCTACCGCGAACAAGACCTTCCCCAGTACCACGG
ACGATCCCTACGACAACGCGAAGGGCAGGATCGTGTCCGTCATGGGCGTG
ACACAGCTCCGCCTGTGGCACAAACTGAGAGTCCACCAGGAACGGGGGTG
CTTACGGCTGCCGCTATTTCTGGAACCGCCTCAGGACTAACAGCGAGTAG
ACTTGGCGATTCAGGAAGCGACCAAAACGGAGGCAATTTGGCTTCTCTTA
ACACCACGGCTGCGTTGGGTGGTCGTGAGGAATTCGAGGGATCTTCCACT
CTTTCGTCGGCGGAAGGGTCTGGGGAAGAAGTTGAGGTCGCTCCCGCTCC
ATCAGTGTCCGTTGCGAGGGCTGCAATCTCGTCGCTACTGCCAGCACAGT
GA
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