mRNA_E-siliculosus-1a_F_contig1310.1892.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1310.1892.1
Unique NamemRNA_E-siliculosus-1a_F_contig1310.1892.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1310.1892.1 vs. uniprot
Match: A0A6H5JYK5_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK5_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.090e-19
Identity = 47/52 (90.38%), Postives = 47/52 (90.38%), Query Frame = -3 
Query:   83 MGRGXXXXXRGGRGGGGRQHFVSSLEELESRNDRDEAWAARRKAEREDSGES 238
            MGRG     RGGRGGGGRQHFVSSLEELESRNDRDEAWAARRKAEREDSGES
Sbjct:    1 MGRGRGKGKRGGRGGGGRQHFVSSLEELESRNDRDEAWAARRKAEREDSGES 52
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYK5_9PHAE4.090e-1990.38SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1310contigE-siliculosus-1a_F_contig1310:11589..11892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size303
Model size304
Exons1
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927833.1070647-CDS-E-siliculosus-1a_F_contig1310:11588..118911622927833.1070647-CDS-E-siliculosus-1a_F_contig1310:11588..11891Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 11589..11891 +
1696318699.6544986-CDS-E-siliculosus-1a_F_contig1310:11588..118911696318699.6544986-CDS-E-siliculosus-1a_F_contig1310:11588..11891Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 11589..11891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1310.1892.1prot_E-siliculosus-1a_F_contig1310.1892.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1310 11589..11891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1310.1892.1

>prot_E-siliculosus-1a_F_contig1310.1892.1 ID=prot_E-siliculosus-1a_F_contig1310.1892.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1892.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=101bp
PAPPRLRCSLLPHSRCRHRLSSWFRRRRILRCPLSPPFGVPPRPRLCRCG
IRAPPGRTQSAGARPRHARRVFPFLSHDPWWFVQALGFASGSLLPLFPVV
L
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mRNA from alignment at E-siliculosus-1a_F_contig1310:11589..11892+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1310.1892.1 ID=mRNA_E-siliculosus-1a_F_contig1310.1892.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1892.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=304bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1310:11589..11892+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCGCGCCCCCTCGTCTTCGCTGCTCCCTTCTTCCCCACTCCCGCTGTCG
TCATCGTCTCTCTTCTTGGTTTCGTCGCCGGAGGATTCTCCGCTGTCCTC
TCTCTCCGCCTTTCGGCGTGCCGCCCAGGCCTCGTCTCTGTCGTTGCGGG
ATTCGAGCTCCTCCAGGGAGGACACAAAGTGCTGGCGCCCGCCCCCGCCA
CGCCCGCCGCGTTTTCCCTTTCCTCTCCCACGACCCATGGTGGTTTGTTC
AAGCTCTTGGATTTGCCTCTGGGTCGCTTCTCCCTCTCTTCCCTGTGGTG
CTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1310:11589..11892+

>mRNA_E-siliculosus-1a_F_contig1310.1892.1 ID=mRNA_E-siliculosus-1a_F_contig1310.1892.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1892.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1310:11589..11892+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCGCGCCCCCTCGTCTTCGCTGCTCCCTTCTTCCCCACTCCCGCTGTCG
TCATCGTCTCTCTTCTTGGTTTCGTCGCCGGAGGATTCTCCGCTGTCCTC
TCTCTCCGCCTTTCGGCGTGCCGCCCAGGCCTCGTCTCTGTCGTTGCGGG
ATTCGAGCTCCTCCAGGGAGGACACAAAGTGCTGGCGCCCGCCCCCGCCA
CGCCCGCCGCGTTTTCCCTTTCCTCTCCCACGACCCATGGTGGTTTGTTC
AAGCTCTTGGATTTGCCTCTGGGTCGCTTCTCCCTCTCTTCCCTGTGGTG
CTGCCCGCGCCCCCTCGTCTTCGCTGCTCCCTTCTTCCCCACTCCCGCTG
TCGTCATCGTCTCTCTTCTTGGTTTCGTCGCCGGAGGATTCTCCGCTGTC
CTCTCTCTCCGCCTTTCGGCGTGCCGCCCAGGCCTCGTCTCTGTCGTTGC
GGGATTCGAGCTCCTCCAGGGAGGACACAAAGTGCTGGCGCCCGCCCCCG
CCACGCCCGCCGCGTTTTCCCTTTCCTCTCCCACGACCCATGGTGGTTTG
TTCAAGCTCTTGGATTTGCCTCTGGGTCGCTTCTCCCTCTCTTCCCTGTG
GTGCTG
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