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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1890.1 vs. uniprot
Match: D7FHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS4_ECTSI) HSP 1 Score: 117 bits (294), Expect = 1.140e-25 Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = -1
Query: 212 MVKCASTFSRIPPLFKPDTLSFLLLLAFSAENMAMLPDDSTLTVAIKDATVSTSTVNPARITSAVQKMRP 421
MVKCASTFSRIPPLF PD L +LLLAFSAENMAMLPDDSTLT+AIKDATVSTSTVNPARITSAVQKMRP
Sbjct: 1 MVKCASTFSRIPPLFNPDKL--VLLLAFSAENMAMLPDDSTLTIAIKDATVSTSTVNPARITSAVQKMRP 68
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1890.1 vs. uniprot
Match: D7FHS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS3_ECTSI) HSP 1 Score: 108 bits (269), Expect = 1.110e-24 Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 3
Query: 759 GSSGSFAQ-FGTSTNGGANSARVQQGLRLTPRYLAANIFHHSLGDLASARTVRHRHEHGNGAG 944
GSSGSFAQ FGTST+GGANS RVQQGLRLTPRYL ANI HHSLGDLASART RHRHE GNGAG
Sbjct: 10 GSSGSFAQQFGTSTDGGANSVRVQQGLRLTPRYLTANILHHSLGDLASARTARHRHERGNGAG 72
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 930 |
| Model size | 2623 |
| Exons | 7 |
| Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1310.1890.1 >prot_E-siliculosus-1a_F_contig1310.1890.1 ID=prot_E-siliculosus-1a_F_contig1310.1890.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1890.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=310bp
MNTAMAPVDSPRRLSPSPSTSHATKRPLSVPEDPTEALAAHVKKCRVSST PGELRLKRDLVECDLLLQEGVARFDKAAGNPLKCQLTFLCSIEGGMGGDP GQGTALSGAAGDTPTAAGERRVPTTFSVVVPKFYPHDPPLVYAERCFSRT CSFVREDGMLQVPFLTTGVWSSVSTMTFVARTLLQGLRDFVAGKPQPWGS PVGSSPNRNRHLRGEQGMPDPVAFVACSTADDINESARTTPRFASSGSES GSGEADAIPGYAMWMAKEEASLEGGTRAPPRRSGGYFSSAVGQEEDECGG TAMDVVDSR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1310:330..6683+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1310.1890.1 ID=mRNA_E-siliculosus-1a_F_contig1310.1890.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1890.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1310:330..6683+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) CTTCACACAACAACAAATAAATCCCATTCAATCCCTTCAACCAACCTCAC
AAAAAGGATCCACGGAGAGAGAGGACCTCGGATTGGAGGAAGCCCTGCCA
GAGCAGAGCAGGGCAATGTATTTTAGATAGACCGTGTGCTGCAAATTTGC
TGTTAGATGATGACATACATCAACAGGTCGCCGGATTGCGTTGTTATTTT
CGCCAGCTCACCGGCCGCATCTTCTGTACCGCCGACGTGATCCTCGCCGG
GTTGACCGTGGAGGTGCTGACGGTGGCATCCTTGATGGCTACGGTCAGGG
TGCTGTCATCGGGGAGCATCGCCATGTTCTCTGCCGAAAACGCAAGCAAC
AACAAGAAGGAGAGCGTGTCAGGTTTGAAGAGCGGCGGAATTCGAGAAAA
AGTCGAGGCACATTTTACCATTTCACCAGCTAGCCGCAGCATGTGGCCCC
GAAGGTTGTGTCAGCAGGCCCGTTAGCTGTTGCTCGCGCAGCACGATTGC
TGCATCTTCGCTGCTGAGCAGCTTCTCCCTGTGTCTCTGCCACGGCGGAG
CCGTCGCTGGGCACTCTTCCATATGCAACAGATAACGGCAGCTAAAATTT
CAGAAAATATTCTCAGCTGATTCGGTGTGTGACGTTGTTACCTAACCCGC
CGACGCCACTGCTGTCGATGAATACAGCTGTCTCCCTACACGGCGACACG
CGGAATCCGTCGCCCTCTCTCACAGCTGCAGATGCCTGCTTACCTGAGGT
TCGTGAGCTGCTGATTGGTAGTCTTTGGGTTGATTTCGATCGTGGATGTG
CGCCGCCCTCTCTAGGTTTTTCCGTGAGCCTCTTTTTTCTTTTTTTTTTT
TTCGGCTCCCTGATCCCCCGCCCCCCAACTCTGCCAACTCCCATTGGCGA
TCCCCCCATATTTCCTCTCTAGCCTGCGCCAGGGCAGCTCGGGGAGTTTC
GCACAGTTCGGCACCAGTACGAACGGAGGAGCAAACAGTGCGCGGGTGCA
GCAGGGCTTGAGGCTGACCCCAAGATACCTGGCCGCAAATATATTCCACC
ACTCGCTTGGAGATCTGGCCAGCGCGCGCACGGTGAGCTGGTGGCTGGAA
TTCCCACTTATTCTAATACATGCGAAACTTCAACTCGACAGCAGTACAGA
GCGCAGTAGTGTATGTATTTGCAAATGTGACGTTTTGCTTGTGTGCATGC
CACCCATGTGCTAGCTTGGTCACACAGCCGTGCAGTGGTTTCCCTCGCAA
CCCTCTGACGTTTGGACGTGGGTTCGAATCTCGTTGCTTTAACGCGAATT
GGAATGTTATTGTTTTCTTCGCAACATGCCCAAACAAATGTGGAGCGATA
ATATTTCATGCGCACGCGGCAAGTACTTCACTGGTGCTGCGCATATGCAT
ATGTGCTGATGTCGACGAGAATGGAACAGCTGATCTTCTCACGATAAAAC
TCAAAGGCAAGCACCGCAGAACGAAGGTGGAGAGTACCACTTCTGCATGG
CCTTCCTCCTGTGCGACCCCGGCTAGTGCGTCCAGAATTAACGAACCGAC
GTCCACTCAACAATTTTTTTTGTACGTATCCTTCAGCAGTACAGTACAGT
ATCACTTGTGTGCGCGCCAAGAGCGTTTTCTGCCGCGTGGGAAAGTTGGG
GTACTGCTGTAGGAGCTCCAATCCGTGGTCACACACAAGGGTTCCTCTCC
CTGAGGCCCCCCACCCACCTTTCACGCATGCATACCATCTGCATGCCGTC
CGTGCGCACCGCAATACCTACTGCGCCTTCTCTCCTTGCGAAAACAGCAG
TCGCACGCAGAACATCACGCACAGCTGCATACAGAACGCGCCCCACCCAC
TCACTCTTTTTTGGCCGAGGCTCGTTTCTTTGTTTGGCTATGGGGTACCC
CCAAGGCGACTAGATAGGTTTTAGTGTATGCATGGGATCCATGGCTGAGC
ACCTGTTGTAATGGCCAAGTTCTTAGATTTTGGATATTTTTAGGCTCAAT
CTTAATCTTTACATTGCTGTGCTGCTACACATACACCAGTTCTCAAGTGG
GTGGAGTACTGTTTCTCCGCGTGCATCTTCGTAGGCGCCCTCGAACCGAG
AGGCAGACCAGTCTACGAGACCTTGTGCGTACTGCCGCATCGTGCCTGCA
ACAATATTTTGAAGTAGATGTTCTGTCGGACGAATTGTGTTGCTACGCGT
AGACACGTGCTTTACTATACTGGCTTGCCACTGCTGCTACTAGTGCCGAG
CTCGGGCTCTGAAAATTTTGTTTCCTGCTGGAGGAGAAAACATCCTTCAA
ACACTGCGTATTGAGCCGTTCAAGACAAATACGAGATGTGAGTAAATCAA
TCGCAATTGAGCATGCTCACGTTCACGACGGAAACCTCTTCCAACCCTCG
GAAGAAAGGAGGAAACCGAACTCGAAACCGCCGCCGCCACACGAAAATCC
GCCGCCGTTGGGAAGACCAGGTACGACACCGCCATGAACACGGCAATGGC
GCCGGTTGACTCGCCCCGGCGACTCTCGCCATCGCCGAGCACGAGTCACG
CGACGAAACGCCCTTTGTCTGTACCCGAAGACCCGACGGAAGCATTGGCT
GCGCACGTCAAGAAGTGTCGAGTGAGGTCAGTCGGGGGGGGGCAATGCGG
GCTCATATACCCATTTCCGCTAGCCCGTGATTGTTGGGGTTGCGACCGGT
TTCAAGGCGCCCAAGACTTCTTCACGAGCGATCTGGATTTATGAGAGTCT
GCCGGGGACCTTGACGAGATGATTCTAGCATATGGTATGCATAGCATGAT
TCACCAAGTGGTCTACCTTCTGCCTGTCGACAAATCTTGCGTCAAACTCG
AACCTCGTCCTAGTGAGTCAGGTGTCTCTTTTTCGCGTTGACCGGGCTAA
TGGATAGACCAAAGAAAATATGCATACCATGGCTGGATGCGTTTGTTTTT
TATATGCCGACTACGCTCGATGGTTGGCCGAAAAAACACACGGACGGGCG
AAACAACAGGAACGCTTACTGGTCCGTGGTTTCCCCTGGTCGGACTTTTG
TGTGTTTAGTACTGCATCAACCACGTTGGCCCGATAAGACCACTGGCTTC
GGCGACCGTATGCACCTATGCCTTGTTCATGTGTGTACTTGTTGAATATC
GTACGCAGCTCTACCCCGGGAGAGCTGAGGTTGAAGAGAGACCTTGTGGA
GTGCGACCTGCTTCTTCAGGAAGGAGTTGCAAGGTGCATTTGCGCTTAGG
GGGGCATGGTGTAGCTCCTGTTGTTGGGAAAATTGTTTTGTTCATCCCAG
CACATCGCTTCCAGAGACGAGAACCGGGAGGGATGGGTCCTGGAAACCCT
GCGTTAGGCGTATCGTAGCCGGTTAGAGAGCGAGGAGCATGCACAAAGGT
TGGTTTCATATTGAGCTGCACTGCTGTGTTCATACACGTCGTGTAGAGCA
CGTACCATGTTTGCTTTTTCGCCCTCCCGCAGACTTCTGTGGATGGAAGA
CGTTTCGCTCGTGCATCACACCTCCCCGATTGTGCATCTAATAAAACACT
AGGAGTTCCGCTGTTCGTACTTTTGCCAGAACGCAGAATCGCCCACGTTG
GTAGTGCATACCAGAAAACCAACTCTTCAGCGCAGTTCATGCGAACAGCC
CTCCCGTCAGTCGCAGTTCGTAAACTTGTACCAGAAACGCCATCGTATCC
GGGTGTCATGTCCACGACAACCGAGCCAATTGAAATCACGGCCGACTCGA
GCATGGCGGCTGTGGGATGCCGTCTCCCTAAGATGGCCTCCCGTCTTTGA
CGATTAGGTACGCACGCCATCGTGTATCTTCGTACGTTTCGCCGCCTGCA
CTTGGATACCTTCCGCCCAGTGGAACGCGGGTCGAGGTGTCATCAAACAT
TGACTGAGGGAGAATGGCATGCCATTCGTGCACGGCTCTTGACCCGCTGT
ATAGAGAAAGCGGAATGACGCGTGGGGCACACCCGCACGAATGCTGGCTA
TGTACGAAGGCCATCGTAGCGCTCAAACCTTAGTTTCGCCTCACATCACA
CCAAGCCCTCAAGCTTCACGCCGTGCGACAGGTTCGATAAAGCGGCTGGG
AATCCTCTCAAATGTCAGCTTACTTTCTTATGCTCGATAGAGGGGGGCAT
GGGGGGGGATCCGGGGCAGGGGACAGCACTGTCAGGCGCAGCGGGGGACA
CACCGACGGCAGCTGGAGAACGAAGGGTTCCAACCACCTTCTCAGTCGTC
GTGCCCAAGTTTTACCCTCACGACCCACCGCTCGTGTACGCTGAGAGGTG
TGAAGCTTCTCCGTTTCAAACAAGTTCCATCTACACTCTAGTTTTAGCCT
TTCGTGTTTGCTGAGTGAAAAGTGCAAATCTACTGTTTCTTCTAATTTAG
AACACAGCAGAAAATGGACCCTTCCGTGTGAGCACTTCTCACGCACGCCG
GTTTCCTGTAAGCAAACTGAAGCTCCGCTGCGAAGGCATTAACACAGACC
TTGGCGATCTTCACACATGTTGGGAAGTTTATATCGTTTCTTCTAGTGTC
TGGATCACGTGGAGATCCATTTGGTGGCAAACAAACTATCAAAACAACAC
CCTTTAGGTGAGGTCGTGACCCTTTGTGCTGCTGGTGCCTAGTCGCCAGA
GACGTAGCTGTCCGTGGACACCGCTGCAGGAGAGTCGGCAGGCCGCCGGG
CAACCGGGCAAGTTGATCTACCCCTGGAACCCGCGGGGGGTCTCCGAGCA
TGCGCAGTGAGAAACGACCGCAGTATTCGATTGGCTGCTGCTGCAGTTTC
CGTGCGAGACTTGAGTCCCGATACGTGTCACCTTCAACACTTGCTACAAC
AGGTGCTTCAGCAGGACTTGCTCGTTCGTTAGAGAAGACGGGATGCTGCA
GGTCCCTTTCTTGACGACCGGTGTTTGGAGCTCCGTGAGCACGATGACCT
TCGTCGCGCGAACCCTGCTTCAGGTAAAGTGCGATGGGGACCCCACACCC
CAGACCCCTGCGTCCCAACCGGCAGCAACACTAACTACAGCGTTCTTTTG
TCAACGATACAGAAAACATGAACTATTCATGCCTTGAAGCCAGGCTCTCT
TCTCGCCGGGGGAAAGGCTTCAGACGAGGTCCGAGGCTGCCCCCCGGCTA
TTGCAGTCAAGTACTCAGAATGGAAGTCCAATTATTCTCTAACTCCACTT
GTTTCAGGGGCTTCGCGATTTTGTTGCCGGCAAGCCGCAGCCATGGGGGA
GCCCCGTTGGGTCCTCCCCAAACCGGAATCGCCACCTTCGAGGGGAACAA
GGCATGCCCGACCCCGTGGCGTTTGTTGCGTGTTCCACTGCCGACGACAT
CAACGAATCGGCACGGACTACACCACGTTTCGCCAGTTCCGGGAGCGAAA
GCGGGAGTGGGGAGGCAGACGCAATACCTGGCTACGCGATGTGGATGGCA
AAGGAGGAGGCGTCACTTGAGGGGGGTACTCGGGCACCGCCGAGAAGAAG
TGGTGGCTACTTTTCAAGCGCAGTGGGGCAAGAGGAGGACGAGTGTGGAG
GCACAGCGATGGATGTCGTGGATTCGCGGTGATTTTGCGTGGGTGGCCCA
ATAACGCGTGTTGTAAGTAAACCCAGTTGTTTCGAGACGTGTATCTTACC
CCGTTGTACTATATGGGCCTCGGTGTTGTTTCTTGCCTACATGGCGCTTT
GAACGCAGAGCACAACGCCGTGCATTCGATTCGTCTTCAGTAGTGCGGGC
TTCGGACAAGGGTGTCCATGGAGCACCCACCCACACGCGTTCGACAGCGT
TTCGTCGGCCAGAAGGAGCATTGCGACATATCCCTGGGAGACGAAATTGT
CTAGCATATGTCCAGGGTTTCCACACCTTGGATATTCACCTCGACGCAAT
TTGAAATCATGACGTCGAATTCCCCTGAAACGTGGCCGGTTTAATTGGGG
TTTCGCGCGCCAAAGGCTATGGTTTTGAGAGCCGTGAGTGCCTCACCGGC
AGGCAGGCCGTAGACAACTGTCTGGCAGCGGTTTAACCGGGCCACTGATT
GGATTGGCAGAAGATCCTTGCTTGGCCGATGCTTGACGTCAGCCAGAGGG
TAGAGTTGGAAGTGTTTCGTCCTCAACGATCACGCATCGAGGAGCCAGTG
AACGTTTGGGCCGGCGCTGGTAAGAGCGGTGGCTATGCGACAGATCTCTG
GCGTGCCGTTGGTTTCGTTTAGTCCGGATCTTTCCCCGCCAATCTCAAGG
GGAAACAATGCTGGTCTGAGAGAGTACATACCACCGCAAGTCGTTGTCAC
TGCTCTCTCAAGCGCATTACTCTCGGATTCGTGCTGGGCGACTACTACTG
GGGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1310:330..6683+ >mRNA_E-siliculosus-1a_F_contig1310.1890.1 ID=mRNA_E-siliculosus-1a_F_contig1310.1890.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1890.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1860bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1310:330..6683+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATGAACACGGCAATGGCGCCGGTTGACTCGCCCCGGCGACTCTCGCCATC GCCGAGCACGAGTCACGCGACGAAACGCCCTTTGTCTGTACCCGAAGACC CGACGGAAGCATTGGCTGCGCACGTCAAGAAGTGTCGAGTGAGATGAACA CGGCAATGGCGCCGGTTGACTCGCCCCGGCGACTCTCGCCATCGCCGAGC ACGAGTCACGCGACGAAACGCCCTTTGTCTGTACCCGAAGACCCGACGGA AGCATTGGCTGCGCACGTCAAGAAGTGTCGAGTGAGCTCTACCCCGGGAG AGCTGAGGTTGAAGAGAGACCTTGTGGAGTGCGACCTGCTTCTTCAGGAA GGAGTTGCAAGCTCTACCCCGGGAGAGCTGAGGTTGAAGAGAGACCTTGT GGAGTGCGACCTGCTTCTTCAGGAAGGAGTTGCAAGGTTCGATAAAGCGG CTGGGAATCCTCTCAAATGTCAGCTTACTTTCTTATGCTCGATAGAGGGG GGCATGGGGGGGGATCCGGGGCAGGGGACAGCACTGTCAGGCGCAGCGGG GGACACACCGACGGCAGCTGGAGAACGAAGGGTTCCAACCACCTTCTCAG TCGTCGTGCCCAAGTTTTACCCTCACGACCCACCGCTCGTGTACGCTGAG AGGTTCGATAAAGCGGCTGGGAATCCTCTCAAATGTCAGCTTACTTTCTT ATGCTCGATAGAGGGGGGCATGGGGGGGGATCCGGGGCAGGGGACAGCAC TGTCAGGCGCAGCGGGGGACACACCGACGGCAGCTGGAGAACGAAGGGTT CCAACCACCTTCTCAGTCGTCGTGCCCAAGTTTTACCCTCACGACCCACC GCTCGTGTACGCTGAGAGGTGCTTCAGCAGGACTTGCTCGTTCGTTAGAG AAGACGGGATGCTGCAGGTCCCTTTCTTGACGACCGGTGTTTGGAGCTCC GTGAGCACGATGACCTTCGTCGCGCGAACCCTGCTTCAGGTGCTTCAGCA GGACTTGCTCGTTCGTTAGAGAAGACGGGATGCTGCAGGTCCCTTTCTTG ACGACCGGTGTTTGGAGCTCCGTGAGCACGATGACCTTCGTCGCGCGAAC CCTGCTTCAGGGGCTTCGCGATTTTGTTGCCGGCAAGCCGCAGCCATGGG GGAGCCCCGTTGGGTCCTCCCCAAACCGGAATCGCCACCTTCGAGGGGAA CAAGGCATGCCCGACCCCGTGGCGTTTGTTGCGTGTTCCACTGCCGACGA CATCAACGAATCGGCACGGACTACACCACGTTTCGCCAGTTCCGGGAGCG AAAGCGGGAGTGGGGAGGCAGACGCAATACCTGGCTACGCGATGTGGATG GCAAAGGAGGAGGCGTCACTTGAGGGGGGTACTCGGGCACCGCCGAGAAG AAGTGGTGGCTACTTTTCAAGCGCAGTGGGGCAAGAGGAGGACGAGTGTG GAGGCACAGCGATGGATGTCGTGGATTCGCGGTGAGGGCTTCGCGATTTT GTTGCCGGCAAGCCGCAGCCATGGGGGAGCCCCGTTGGGTCCTCCCCAAA CCGGAATCGCCACCTTCGAGGGGAACAAGGCATGCCCGACCCCGTGGCGT TTGTTGCGTGTTCCACTGCCGACGACATCAACGAATCGGCACGGACTACA CCACGTTTCGCCAGTTCCGGGAGCGAAAGCGGGAGTGGGGAGGCAGACGC AATACCTGGCTACGCGATGTGGATGGCAAAGGAGGAGGCGTCACTTGAGG GGGGTACTCGGGCACCGCCGAGAAGAAGTGGTGGCTACTTTTCAAGCGCA GTGGGGCAAGAGGAGGACGAGTGTGGAGGCACAGCGATGGATGTCGTGGA TTCGCGGTGA back to top
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